bluecellulab 2.6.14__tar.gz → 2.6.15__tar.gz

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  1. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/PKG-INFO +1 -1
  2. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/psegment.py +2 -2
  3. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/synapse/synapse_factory.py +4 -0
  4. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab.egg-info/PKG-INFO +1 -1
  5. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.compile_mod.sh +0 -0
  6. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.gitattributes +0 -0
  7. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.github/dependabot.yml +0 -0
  8. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.github/workflows/release.yml +0 -0
  9. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.github/workflows/test.yml +0 -0
  10. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.gitignore +0 -0
  11. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.gitlab-ci.yml +0 -0
  12. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.readthedocs.yml +0 -0
  13. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/.zenodo.json +0 -0
  14. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/AUTHORS.txt +0 -0
  15. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/CHANGELOG.rst +0 -0
  16. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/LICENSE +0 -0
  17. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/MANIFEST.in +0 -0
  18. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/Makefile +0 -0
  19. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/README.rst +0 -0
  20. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/__init__.py +0 -0
  21. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/analysis/__init__.py +0 -0
  22. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/analysis/inject_sequence.py +0 -0
  23. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/__init__.py +0 -0
  24. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/ballstick/__init__.py +0 -0
  25. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/ballstick/emodel.hoc +0 -0
  26. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/ballstick/morphology.asc +0 -0
  27. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/cell_dict.py +0 -0
  28. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/core.py +0 -0
  29. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/injector.py +0 -0
  30. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/plotting.py +0 -0
  31. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/random.py +0 -0
  32. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/recording.py +0 -0
  33. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/section_distance.py +0 -0
  34. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/serialized_sections.py +0 -0
  35. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/sonata_proxy.py +0 -0
  36. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/stimuli_generator.py +0 -0
  37. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/cell/template.py +0 -0
  38. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/__init__.py +0 -0
  39. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/circuit_access/__init__.py +0 -0
  40. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/circuit_access/bluepy_circuit_access.py +0 -0
  41. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/circuit_access/definition.py +0 -0
  42. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/circuit_access/sonata_circuit_access.py +0 -0
  43. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/config/__init__.py +0 -0
  44. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/config/bluepy_simulation_config.py +0 -0
  45. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/config/definition.py +0 -0
  46. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/config/sections.py +0 -0
  47. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/config/sonata_simulation_config.py +0 -0
  48. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/format.py +0 -0
  49. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/iotools.py +0 -0
  50. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/node_id.py +0 -0
  51. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/simulation_access.py +0 -0
  52. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/synapse_properties.py +0 -0
  53. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit/validate.py +0 -0
  54. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/circuit_simulation.py +0 -0
  55. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/connection.py +0 -0
  56. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/dendrogram.py +0 -0
  57. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/exceptions.py +0 -0
  58. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/graph.py +0 -0
  59. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/hoc/Cell.hoc +0 -0
  60. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/hoc/RNGSettings.hoc +0 -0
  61. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/hoc/TDistFunc.hoc +0 -0
  62. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/hoc/TStim.hoc +0 -0
  63. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/hoc/fileUtils.hoc +0 -0
  64. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/importer.py +0 -0
  65. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/neuron_interpreter.py +0 -0
  66. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/plotwindow.py +0 -0
  67. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/psection.py +0 -0
  68. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/rngsettings.py +0 -0
  69. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/simulation/__init__.py +0 -0
  70. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/simulation/neuron_globals.py +0 -0
  71. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/simulation/parallel.py +0 -0
  72. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/simulation/simulation.py +0 -0
  73. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/stimulus/__init__.py +0 -0
  74. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/stimulus/circuit_stimulus_definitions.py +0 -0
  75. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/stimulus/factory.py +0 -0
  76. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/synapse/__init__.py +0 -0
  77. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/synapse/synapse_types.py +0 -0
  78. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/tools.py +0 -0
  79. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/type_aliases.py +0 -0
  80. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/utils.py +0 -0
  81. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/verbosity.py +0 -0
  82. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab.egg-info/SOURCES.txt +0 -0
  83. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab.egg-info/dependency_links.txt +0 -0
  84. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab.egg-info/requires.txt +0 -0
  85. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab.egg-info/top_level.txt +0 -0
  86. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/Makefile +0 -0
  87. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/images/voltage-readme.png +0 -0
  88. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/make.bat +0 -0
  89. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/requirements_docs.txt +0 -0
  90. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/_static/.gitkeep +0 -0
  91. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/api.rst +0 -0
  92. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/changelog.rst +0 -0
  93. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/compiling-mechanisms.rst +0 -0
  94. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/conf.py +0 -0
  95. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/index.rst +0 -0
  96. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/list_of_stim.rst +0 -0
  97. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/docs/source/logo/BlueCelluLabBanner.jpg +0 -0
  98. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/pyproject.toml +0 -0
  99. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/setup.cfg +0 -0
  100. {bluecellulab-2.6.14 → bluecellulab-2.6.15}/tox.ini +0 -0
{bluecellulab-2.6.14 → bluecellulab-2.6.15}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bluecellulab
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- Version: 2.6.14
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+ Version: 2.6.15
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  Summary: Biologically detailed neural network simulations and analysis.
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  Author: Blue Brain Project, EPFL
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  License: Apache2.0
{bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/psegment.py RENAMED
@@ -25,7 +25,7 @@ class PSegment:
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  def __init__(self, hsegment, parentsection):
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  # import matplotlib as plt
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- from matplotlib import cm
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+ from matplotlib import colormaps
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  self.hsegment = hsegment
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  self.parentsection = parentsection
@@ -35,7 +35,7 @@ class PSegment:
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  self.figure = None
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  self.figX = None
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  self.figY = None
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- self.color_map = cm.get_cmap("hot")
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+ self.color_map = colormaps["hot"]
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  self.ax = None
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  self.patch = None
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  self.plotvariable = None
{bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab/synapse/synapse_factory.py RENAMED
@@ -118,6 +118,10 @@ class SynapseFactory:
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  not np.isnan(syn_description[SynapseProperty.AFFERENT_SECTION_POS])):
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  # position is pre computed in SONATA
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  location = syn_description[SynapseProperty.AFFERENT_SECTION_POS]
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+ if location == 0.0:
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+ location = 0.0000001
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+ elif location >= 1.0:
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+ location = 0.9999999
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  else:
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  ipt = syn_description[SynapseProperty.POST_SEGMENT_ID]
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  syn_offset = syn_description[SynapseProperty.POST_SEGMENT_OFFSET]
{bluecellulab-2.6.14 → bluecellulab-2.6.15}/bluecellulab.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bluecellulab
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- Version: 2.6.14
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+ Version: 2.6.15
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  Summary: Biologically detailed neural network simulations and analysis.
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  Author: Blue Brain Project, EPFL
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  License: Apache2.0
{bluecellulab-2.6.14 → bluecellulab-2.6.15}/.gitignore RENAMED
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{bluecellulab-2.6.14 → bluecellulab-2.6.15}/AUTHORS.txt RENAMED
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{bluecellulab-2.6.14 → bluecellulab-2.6.15}/LICENSE RENAMED
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{bluecellulab-2.6.14 → bluecellulab-2.6.15}/MANIFEST.in RENAMED
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{bluecellulab-2.6.14 → bluecellulab-2.6.15}/Makefile RENAMED
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{bluecellulab-2.6.14 → bluecellulab-2.6.15}/README.rst RENAMED
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{bluecellulab-2.6.14 → bluecellulab-2.6.15}/setup.cfg RENAMED
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{bluecellulab-2.6.14 → bluecellulab-2.6.15}/tox.ini RENAMED
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