bluecellulab 2.6.11__tar.gz → 2.6.13__tar.gz

{bluecellulab-2.6.11 → bluecellulab-2.6.13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.6.11
+Version: 2.6.13
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0

{bluecellulab-2.6.11 → bluecellulab-2.6.13}/bluecellulab/simulation/parallel.py

@@ -1,6 +1,7 @@
 """Controlled simulations in parallel."""
 
 from __future__ import annotations
+import multiprocessing
 from multiprocessing.pool import Pool
 from bluecellulab.simulation.neuron_globals import NeuronGlobals
 
@@ -11,7 +12,8 @@ class IsolatedProcess(Pool):
     Use this when running isolated NEURON simulations. Running 2 NEURON
     simulations on a single process is to be avoided. Required global
     NEURON simulation parameters will automatically be passed to each
-    worker.
+    worker. `fork` mode of multiprocessing is used to pass any other
+    global NEURON parameters to each worker.
     """
 
     def __init__(self, processes: int | None = 1):
@@ -21,12 +23,14 @@ class IsolatedProcess(Pool):
             processes: The number of processes to use for running the simulations.
                        If set to None, then the number returned by os.cpu_count() is used.
         """
+        ctx = multiprocessing.get_context("fork")
         neuron_global_params = NeuronGlobals.get_instance().export_params()
         super().__init__(
             processes=processes,
             initializer=self.init_worker,
             initargs=(neuron_global_params,),
             maxtasksperchild=1,
+            context=ctx,
         )
 
     @staticmethod

{bluecellulab-2.6.11 → bluecellulab-2.6.13}/bluecellulab.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.6.11
+Version: 2.6.13
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0

{bluecellulab-2.6.11 → bluecellulab-2.6.13}/docs/source/list_of_stim.rst

@@ -135,4 +135,29 @@ FirePattern
 
    # Testing
    assert len(ramp.current) > 0
-   assert len(step.current) > 0
+   assert len(step.current) > 0
+
+PosCheops
+~~~~~~~~~
+
+**Definition**: The PosCheops stimulus is a sequence of increasing and decreasing ramps with a positive amplitude.
+
+.. plot::
+   :context: close-figs
+   :include-source: True
+
+   pos_cheops = stim_factory.pos_cheops(threshold_current=0.5)
+   pos_cheops.plot()
+
+
+NegCheops
+~~~~~~~~~
+
+**Definition**: The NegCheops stimulus is a sequence of increasing and decreasing ramps with a negative amplitude.
+
+.. plot::
+   :context: close-figs
+   :include-source: True
+
+   neg_cheops = stim_factory.neg_cheops(threshold_current=0.5)
+   neg_cheops.plot()