bluecellulab 2.6.10__tar.gz → 2.6.12__tar.gz

{bluecellulab-2.6.10 → bluecellulab-2.6.12}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.6.10
+Version: 2.6.12
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0

{bluecellulab-2.6.10 → bluecellulab-2.6.12}/bluecellulab/cell/serialized_sections.py

@@ -15,17 +15,14 @@
 index."""
 from __future__ import annotations
 import logging
-import warnings
 import neuron
 from bluecellulab.type_aliases import HocObjectType, NeuronSection
 
 
 logger = logging.getLogger(__name__)
-warnings.filterwarnings("once", category=UserWarning, module=__name__)
 
 
 class SerializedSections:
-
     def __init__(self, cell: HocObjectType) -> None:
         self.isec2sec: dict[int, NeuronSection] = {}
         n = cell.nSecAll
@@ -37,7 +34,8 @@ class SerializedSections:
                 raise ValueError("Error: failure in mk2_isec2sec()")
 
             if v_value < 0:
-                warnings.warn(
-                    f"[Warning] SerializedSections: v(0.0001) < 0. index={index} v()={v_value}")
+                logging.debug(
+                    f"[Warning] SerializedSections: v(0.0001) < 0. index={index} v()={v_value}"
+                )
             else:
                 self.isec2sec[int(v_value)] = neuron.h.SectionRef(sec=sec)

{bluecellulab-2.6.10 → bluecellulab-2.6.12}/bluecellulab.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.6.10
+Version: 2.6.12
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0

{bluecellulab-2.6.10 → bluecellulab-2.6.12}/docs/source/list_of_stim.rst

@@ -135,4 +135,29 @@ FirePattern
 
    # Testing
    assert len(ramp.current) > 0
-   assert len(step.current) > 0
+   assert len(step.current) > 0
+
+PosCheops
+~~~~~~~~~
+
+**Definition**: The PosCheops stimulus is a sequence of increasing and decreasing ramps with a positive amplitude.
+
+.. plot::
+   :context: close-figs
+   :include-source: True
+
+   pos_cheops = stim_factory.pos_cheops(threshold_current=0.5)
+   pos_cheops.plot()
+
+
+NegCheops
+~~~~~~~~~
+
+**Definition**: The NegCheops stimulus is a sequence of increasing and decreasing ramps with a negative amplitude.
+
+.. plot::
+   :context: close-figs
+   :include-source: True
+
+   neg_cheops = stim_factory.neg_cheops(threshold_current=0.5)
+   neg_cheops.plot()