blackrubby 0.1.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- blackrubby-0.1.2/.gitattributes +2 -0
- blackrubby-0.1.2/.github/workflows/wheels.yml +71 -0
- blackrubby-0.1.2/.gitignore +8 -0
- blackrubby-0.1.2/.gitmodules +3 -0
- blackrubby-0.1.2/CMakeLists.txt +51 -0
- blackrubby-0.1.2/LICENSE +201 -0
- blackrubby-0.1.2/PKG-INFO +173 -0
- blackrubby-0.1.2/README.md +149 -0
- blackrubby-0.1.2/pyproject.toml +56 -0
- blackrubby-0.1.2/src/blackrubby/__init__.py +6 -0
- blackrubby-0.1.2/src/core.cpp +249 -0
- blackrubby-0.1.2/tests/test_api.py +35 -0
- blackrubby-0.1.2/vendor/blackrubby.hpp +13 -0
- blackrubby-0.1.2/vendor/blackrubby_impl.cpp +1982 -0
- blackrubby-0.1.2/vendor/eigen/.git +1 -0
- blackrubby-0.1.2/vendor/eigen/.gitignore +38 -0
- blackrubby-0.1.2/vendor/eigen/.gitlab/issue_templates/Bug Report.md +69 -0
- blackrubby-0.1.2/vendor/eigen/.gitlab/issue_templates/Feature Request.md +7 -0
- blackrubby-0.1.2/vendor/eigen/.gitlab/merge_request_templates/Merge Request Template.md +26 -0
- blackrubby-0.1.2/vendor/eigen/.gitlab-ci.yml +23 -0
- blackrubby-0.1.2/vendor/eigen/.hgeol +11 -0
- blackrubby-0.1.2/vendor/eigen/CMakeLists.txt +653 -0
- blackrubby-0.1.2/vendor/eigen/COPYING.APACHE +203 -0
- blackrubby-0.1.2/vendor/eigen/COPYING.BSD +26 -0
- blackrubby-0.1.2/vendor/eigen/COPYING.GPL +674 -0
- blackrubby-0.1.2/vendor/eigen/COPYING.LGPL +502 -0
- blackrubby-0.1.2/vendor/eigen/COPYING.MINPACK +51 -0
- blackrubby-0.1.2/vendor/eigen/COPYING.MPL2 +373 -0
- blackrubby-0.1.2/vendor/eigen/COPYING.README +18 -0
- blackrubby-0.1.2/vendor/eigen/CTestConfig.cmake +17 -0
- blackrubby-0.1.2/vendor/eigen/CTestCustom.cmake.in +4 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Cholesky +45 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/CholmodSupport +48 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Core +384 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Dense +7 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Eigen +2 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Eigenvalues +60 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Geometry +59 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Householder +29 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Jacobi +32 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/KLUSupport +41 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/LU +47 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/MetisSupport +35 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/OrderingMethods +70 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/PaStiXSupport +49 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/PardisoSupport +35 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/QR +50 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/QtAlignedMalloc +39 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/SPQRSupport +34 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/SVD +50 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/Sparse +34 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/SparseCholesky +37 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/SparseCore +69 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/SparseLU +50 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/SparseQR +36 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/StdDeque +27 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/StdList +26 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/StdVector +27 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/SuperLUSupport +64 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/UmfPackSupport +40 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Cholesky/LDLT.h +688 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Cholesky/LLT.h +558 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Array.h +417 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +1010 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Block.h +448 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/BooleanRedux.h +162 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CommaInitializer.h +164 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1741 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CoreIterators.h +132 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +183 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +132 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DenseBase.h +701 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +685 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DenseStorage.h +652 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Diagonal.h +258 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +391 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/EigenBase.h +160 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +150 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/GeneralProduct.h +465 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +1040 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +194 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/IO.h +258 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Inverse.h +117 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Map.h +171 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MapBase.h +310 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MathFunctions.h +2057 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +200 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Matrix.h +565 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MatrixBase.h +547 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/NestByValue.h +85 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/NoAlias.h +109 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/NumTraits.h +335 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +605 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1128 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Product.h +191 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1179 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Random.h +218 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Redux.h +515 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Ref.h +381 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ReturnByValue.h +119 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Reverse.h +217 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Select.h +164 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +365 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SolverBase.h +168 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/StableNorm.h +251 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Stride.h +116 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Swap.h +68 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Transpose.h +464 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Transpositions.h +386 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +1001 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +784 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Visitor.h +381 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +372 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +584 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +351 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +166 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +180 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +583 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Constants.h +563 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/MKL_support.h +137 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Macros.h +1464 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Memory.h +1163 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Meta.h +812 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +221 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/XprHelper.h +856 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- blackrubby-0.1.2/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +2045 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +46 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +16 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +46 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +369 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +54 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +34 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +431 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/doc/examples/SYCL/CwiseMul.cpp +63 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_maxsizevector.cpp +77 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_meta.cpp +357 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_non_blocking_thread_pool.cpp +180 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_runqueue.cpp +235 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_argmax_sycl.cpp +258 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_assign.cpp +370 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_block_access.cpp +576 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_block_eval.cpp +858 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_block_io.cpp +445 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_broadcast_sycl.cpp +144 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_broadcasting.cpp +331 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_builtins_sycl.cpp +354 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_cast_float16_gpu.cu +79 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_casts.cpp +186 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_chipping.cpp +425 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_chipping_sycl.cpp +623 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_comparisons.cpp +84 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_complex_cwise_ops_gpu.cu +102 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_complex_gpu.cu +186 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_concatenation.cpp +143 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_concatenation_sycl.cpp +180 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_const.cpp +62 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_contract_gpu.cu +218 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_contract_sycl.cpp +1026 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_contraction.cpp +601 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_convolution.cpp +150 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_convolution_sycl.cpp +469 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_custom_index.cpp +100 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_custom_op.cpp +111 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_custom_op_sycl.cpp +170 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_device.cu +396 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_device_sycl.cpp +77 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_dimension.cpp +88 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_empty.cpp +40 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_executor.cpp +731 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_expr.cpp +464 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_fft.cpp +304 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_fixed_size.cpp +261 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_forced_eval.cpp +79 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_forced_eval_sycl.cpp +77 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_generator.cpp +91 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_generator_sycl.cpp +147 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_gpu.cu +1643 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_ifft.cpp +154 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_image_op_sycl.cpp +103 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_image_patch.cpp +809 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_image_patch_sycl.cpp +1092 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_index_list.cpp +385 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_inflation.cpp +81 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_inflation_sycl.cpp +136 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_intdiv.cpp +147 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_io.cpp +136 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_layout_swap.cpp +61 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_layout_swap_sycl.cpp +126 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_lvalue.cpp +42 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_map.cpp +327 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_math.cpp +46 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_math_sycl.cpp +105 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_mixed_indices.cpp +53 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_morphing.cpp +565 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_morphing_sycl.cpp +386 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_move.cpp +76 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_notification.cpp +64 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_complex.cpp +103 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_const_values.cpp +105 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_float16_gpu.cu +488 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_strings.cpp +152 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_padding.cpp +93 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_padding_sycl.cpp +157 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_patch.cpp +172 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_patch_sycl.cpp +249 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_random.cpp +86 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_random_gpu.cu +86 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_random_sycl.cpp +100 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reduction.cpp +532 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reduction_gpu.cu +154 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reduction_sycl.cpp +1014 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_ref.cpp +248 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reverse.cpp +190 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reverse_sycl.cpp +253 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_roundings.cpp +62 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_scan.cpp +110 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_scan_gpu.cu +78 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_scan_sycl.cpp +141 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_shuffling.cpp +283 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_shuffling_sycl.cpp +117 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_simple.cpp +327 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_striding.cpp +119 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_striding_sycl.cpp +203 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_sugar.cpp +81 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_sycl.cpp +361 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_symmetry.cpp +818 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_thread_pool.cpp +721 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_trace.cpp +172 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_volume_patch.cpp +112 -0
- blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_volume_patch_sycl.cpp +222 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/test/special_functions.cpp +497 -0
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- blackrubby-0.1.2/vendor/eigen/unsupported/test/splines.cpp +281 -0
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+
endif()
|
|
10
|
+
if(NOT EIGEN3_INCLUDE_DIR)
|
|
11
|
+
find_path(EIGEN3_INCLUDE_DIR Eigen/Dense HINTS "${CMAKE_CURRENT_SOURCE_DIR}/../eigen-3.4.0")
|
|
12
|
+
endif()
|
|
13
|
+
if(NOT EIGEN3_INCLUDE_DIR)
|
|
14
|
+
find_path(EIGEN3_INCLUDE_DIR Eigen/Dense HINTS "${CMAKE_CURRENT_SOURCE_DIR}/vendor/eigen")
|
|
15
|
+
endif()
|
|
16
|
+
if(NOT EIGEN3_INCLUDE_DIR)
|
|
17
|
+
message(STATUS "Vendored Eigen not found; fetching Eigen 3.4.0 (set EIGEN3_INCLUDE_DIR to skip the download)")
|
|
18
|
+
include(FetchContent)
|
|
19
|
+
set(BUILD_TESTING OFF CACHE BOOL "" FORCE)
|
|
20
|
+
set(EIGEN_BUILD_TESTING OFF CACHE BOOL "" FORCE)
|
|
21
|
+
set(EIGEN_BUILD_DOC OFF CACHE BOOL "" FORCE)
|
|
22
|
+
set(EIGEN_BUILD_PKGCONFIG OFF CACHE BOOL "" FORCE)
|
|
23
|
+
FetchContent_Declare(eigen
|
|
24
|
+
URL https://github.com/eigen-mirror/eigen/archive/refs/tags/3.4.0.tar.gz
|
|
25
|
+
URL_HASH SHA256=8586084f71f9bde545ee7fa6d00288b264a2b7ac3607b974e54d13e7162c1c72
|
|
26
|
+
DOWNLOAD_EXTRACT_TIMESTAMP TRUE
|
|
27
|
+
)
|
|
28
|
+
FetchContent_GetProperties(eigen)
|
|
29
|
+
if(NOT eigen_POPULATED)
|
|
30
|
+
FetchContent_Populate(eigen)
|
|
31
|
+
endif()
|
|
32
|
+
set(EIGEN3_INCLUDE_DIR "${eigen_SOURCE_DIR}")
|
|
33
|
+
endif()
|
|
34
|
+
|
|
35
|
+
pybind11_add_module(_core MODULE src/core.cpp)
|
|
36
|
+
target_compile_features(_core PRIVATE cxx_std_17)
|
|
37
|
+
target_compile_definitions(_core PRIVATE BLACKRUBBY_NO_MAIN)
|
|
38
|
+
target_include_directories(_core PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/vendor")
|
|
39
|
+
target_include_directories(_core SYSTEM PRIVATE "${EIGEN3_INCLUDE_DIR}")
|
|
40
|
+
if(MSVC)
|
|
41
|
+
target_compile_options(_core PRIVATE /O2 /EHsc)
|
|
42
|
+
else()
|
|
43
|
+
target_compile_options(_core PRIVATE -O3)
|
|
44
|
+
endif()
|
|
45
|
+
|
|
46
|
+
find_package(OpenMP QUIET)
|
|
47
|
+
if(OpenMP_CXX_FOUND)
|
|
48
|
+
target_link_libraries(_core PRIVATE OpenMP::OpenMP_CXX)
|
|
49
|
+
endif()
|
|
50
|
+
|
|
51
|
+
install(TARGETS _core DESTINATION blackrubby)
|
blackrubby-0.1.2/LICENSE
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|
@@ -0,0 +1,201 @@
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|
@@ -0,0 +1,173 @@
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|
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1
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Metadata-Version: 2.4
|
|
2
|
+
Name: blackrubby
|
|
3
|
+
Version: 0.1.2
|
|
4
|
+
Summary: C++ symbolic-plus-kernel regression estimator with a NumPy Python API
|
|
5
|
+
Keywords: regression,symbolic regression,random Fourier features,machine learning
|
|
6
|
+
License-Expression: Apache-2.0
|
|
7
|
+
License-File: LICENSE
|
|
8
|
+
Classifier: Development Status :: 3 - Alpha
|
|
9
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+
Classifier: Intended Audience :: Science/Research
|
|
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|
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Classifier: Programming Language :: C++
|
|
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|
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Classifier: Programming Language :: Python :: 3
|
|
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|
+
Classifier: Programming Language :: Python :: 3.10
|
|
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|
+
Classifier: Programming Language :: Python :: 3.11
|
|
14
|
+
Classifier: Programming Language :: Python :: 3.12
|
|
15
|
+
Classifier: Programming Language :: Python :: 3.13
|
|
16
|
+
Classifier: Programming Language :: Python :: 3.14
|
|
17
|
+
Classifier: Programming Language :: Python :: 3.15
|
|
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|
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Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
|
|
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|
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Requires-Python: >=3.10
|
|
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|
+
Requires-Dist: numpy>=1.24
|
|
21
|
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Provides-Extra: test
|
|
22
|
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Requires-Dist: pytest>=8; extra == "test"
|
|
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|
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Description-Content-Type: text/markdown
|
|
24
|
+
|
|
25
|
+
# BlackRubby Regressor
|
|
26
|
+
|
|
27
|
+
BlackRubby is a numeric regression estimator that fuses two complementary learners:
|
|
28
|
+
|
|
29
|
+
- **Rubby** — a symbolic search that evolves closed-form candidate expressions (e.g. `sqrt(x0^3 / (x1 + x2))`) on a 3×3×3 cube-walk genome.
|
|
30
|
+
- **Black** — a random-Fourier-feature ridge regression that fits a smooth kernel model over the inputs.
|
|
31
|
+
|
|
32
|
+
The final model is a single ridge over `[Fourier features | standardized inputs | symbolic columns]`, where the bandwidth, ridge strength, and whether to trust the symbolic columns are all chosen by exact leave-one-out cross-validation. It handles multiple numeric input features and one numeric target, with no Python-side dependencies beyond NumPy.
|
|
33
|
+
|
|
34
|
+
```python
|
|
35
|
+
import numpy as np
|
|
36
|
+
from blackrubby import BlackRubbyRegressor
|
|
37
|
+
|
|
38
|
+
rng = np.random.default_rng(7)
|
|
39
|
+
X = rng.uniform(-1, 1, size=(512, 3))
|
|
40
|
+
y = np.sin(X[:, 0] * X[:, 1]) + 0.2 * X[:, 2]
|
|
41
|
+
|
|
42
|
+
model = BlackRubbyRegressor(expansion_dim=256, random_state=7)
|
|
43
|
+
model.fit(X[:400], y[:400])
|
|
44
|
+
print("held-out R2:", model.score(X[400:], y[400:]))
|
|
45
|
+
print("champion:", model.champion_formula_)
|
|
46
|
+
```
|
|
47
|
+
|
|
48
|
+
## Install
|
|
49
|
+
|
|
50
|
+
```
|
|
51
|
+
pip install blackrubby
|
|
52
|
+
```
|
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53
|
+
|
|
54
|
+
Pre-built wheels are published for CPython 3.10–3.15 on Linux (x86_64), Windows (x64), and macOS (Intel and Apple Silicon). On a supported platform this installs in seconds with no compiler.
|
|
55
|
+
|
|
56
|
+
Building from source requires only a C++17 compiler and CMake. Eigen 3.4.0 is vendored under `vendor/eigen`, so **no network access is needed**; set `EIGEN3_INCLUDE_DIR` to use a different Eigen installation.
|
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57
|
+
|
|
58
|
+
## How it works
|
|
59
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+
|
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60
|
+
Given training pairs `(x_i, y_i)` with `x_i ∈ R^d`, BlackRubby fits a linear model in a lifted feature space:
|
|
61
|
+
|
|
62
|
+
```
|
|
63
|
+
ŷ(x) = wᵀ Φ(x) + b
|
|
64
|
+
```
|
|
65
|
+
|
|
66
|
+
The feature map `Φ(x)` has three blocks:
|
|
67
|
+
|
|
68
|
+
1. **Random Fourier features.** `D` cos/sin pairs approximating a stationary kernel:
|
|
69
|
+
`Φ_fourier(x) = (1/√D) [cos(W x̂ / γ), sin(W x̂ / γ)]`, where `x̂` is the standardized input, `W ∈ R^{D×d}` has standard-normal entries, and `γ` is the bandwidth. This is the classic Rahimi–Recht approximation — as `D → ∞`, the inner product `Φ(x)ᵀΦ(x')` converges to the Gaussian kernel `k(x, x') = exp(-‖x̂ - x̂'‖² / 2γ²)`.
|
|
70
|
+
|
|
71
|
+
2. **Standardized inputs.** The raw `(x - μ) / σ` block, which lets the model represent exactly-linear components without spending Fourier capacity on them.
|
|
72
|
+
|
|
73
|
+
3. **Symbolic columns (Rubby).** Up to `sym_top_k` expressions found by the search, each standardized to zero mean and unit variance. These give the ridge a direct handle on non-smooth or strongly multiplicative structure (ratios, square roots, powers) that Fourier features approximate only slowly.
|
|
74
|
+
|
|
75
|
+
The ridge weights minimize the regularized squared error:
|
|
76
|
+
|
|
77
|
+
```
|
|
78
|
+
w* = argmin_w Σ_i (y_i - wᵀΦ(x_i) - b)² + α ‖w‖²
|
|
79
|
+
```
|
|
80
|
+
|
|
81
|
+
### Hyperparameters by exact leave-one-out CV
|
|
82
|
+
|
|
83
|
+
`bandwidth γ`, ridge strength `α`, and the symbolic on/off decision are chosen on a `select_rows`-row subset using the **exact leave-one-out** formula for ridge regression. One eigendecomposition of the centered Gram matrix gives the LOO residual for every `α` in the grid simultaneously:
|
|
84
|
+
|
|
85
|
+
```
|
|
86
|
+
e_i^LOO = (y_i - ŷ_i) / (1 - h_i), h = U diag(λ_j / (λ_j + nα)) Uᵀ
|
|
87
|
+
```
|
|
88
|
+
|
|
89
|
+
so the model only leans on the symbolic columns when they demonstrably reduce out-of-sample error. A 2-fold holdout at full feature width re-checks the symbolic decision, because the reduced-width selection screen can mis-rank those columns.
|
|
90
|
+
|
|
91
|
+
### The Rubby symbolic search
|
|
92
|
+
|
|
93
|
+
Candidate expressions are encoded as a walk on a 3×3×3 cube whose 27 cells each hold one operation or operand (`const`, `x_k`, `+`, `-`, `*`, `/`, `log`, `exp`, `sqrt`, `abs`, `x²`, `x³`). Starting from the corner cell, the genome's path (`sym_turns` moves, each ±x/±y/±z with wraparound) visits cells in order, and the visited nodes form a stack program evaluated column-wise over the data. Each candidate gets a least-squares scale and offset (`a·f(x) + b`), so the search only has to find the right *shape*.
|
|
94
|
+
|
|
95
|
+
A generation consists of tournament selection (with a path-distance diversity check), uniform crossover over cube cells, point mutation, occasional MCTS refinement of the walk itself (UCT over path prefixes), and a periodic Levenberg–Marquardt polish of the constants on the active path. Fitness is normalized mean squared error, `NMSE = MSE / Var(y)`. The best distinct expressions form a hall of fame that feeds the ridge.
|
|
96
|
+
|
|
97
|
+
The search runs on a strided `sym_rows`-row subsample for `sym_generations` generations and is fully seeded by `random_state`.
|
|
98
|
+
|
|
99
|
+
### Final solve
|
|
100
|
+
|
|
101
|
+
The full model is solved in primal form over up to `solve_rows` rows (auto-capped at `max(50000, 20 × n_features)`), accumulating the centered Gram matrix `G = ΦᵀΦ` in batches and applying a Cholesky solve with an LDLT fallback.
|
|
102
|
+
|
|
103
|
+
## Reproducibility
|
|
104
|
+
|
|
105
|
+
With the default `sym_time_limit=0`, the symbolic search is generation-bounded and **fully deterministic**: the same `random_state`, data, and parameters produce a bit-identical model on every run, regardless of thread count or machine load. Setting `sym_time_limit > 0` switches to a wall-clock cap, which can stop at different generations on different runs and therefore trades reproducibility for a hard time budget.
|
|
106
|
+
|
|
107
|
+
## API
|
|
108
|
+
|
|
109
|
+
```python
|
|
110
|
+
BlackRubbyRegressor(
|
|
111
|
+
expansion_dim=1024, # Fourier cos/sin pairs (D)
|
|
112
|
+
alpha=0.0, # ridge strength; 0 = auto by LOO-CV
|
|
113
|
+
bandwidth=0.0, # Fourier bandwidth γ; 0 = auto by LOO-CV
|
|
114
|
+
random_state=42, # seed for projections and symbolic search
|
|
115
|
+
use_symbolic=True, # run the Rubby search
|
|
116
|
+
sym_population=128, # GA population size
|
|
117
|
+
sym_generations=100, # GA generations (when time limit is 0)
|
|
118
|
+
sym_rows=1024, # rows used by the symbolic search
|
|
119
|
+
sym_top_k=6, # symbolic columns offered to the ridge
|
|
120
|
+
sym_time_limit=0.0, # seconds; 0 = generation-bounded (reproducible)
|
|
121
|
+
select_rows=2048, # rows used for hyperparameter selection
|
|
122
|
+
select_dim=128, # Fourier pairs used during selection
|
|
123
|
+
batch_size=2048, # rows per block in feature assembly
|
|
124
|
+
solve_rows=-1, # rows in the final solve; -1 = auto cap, 0 = all
|
|
125
|
+
max_frequency=54.598, # largest 1D frequency (standardized units); 1D inputs only
|
|
126
|
+
)
|
|
127
|
+
```
|
|
128
|
+
|
|
129
|
+
Methods: `fit(X, y)`, `predict(X)`, `score(X, y)` (R²), `get_params()`, `set_params(**params)`.
|
|
130
|
+
|
|
131
|
+
After fitting, the following attributes are available:
|
|
132
|
+
|
|
133
|
+
| Attribute | Meaning |
|
|
134
|
+
|---|---|
|
|
135
|
+
| `n_features_in_` | number of input columns seen during `fit` |
|
|
136
|
+
| `fit_seconds_` | total wall-clock fit time |
|
|
137
|
+
| `symbolic_seconds_` | time spent in the Rubby search |
|
|
138
|
+
| `chosen_bandwidth_` | selected Fourier bandwidth γ |
|
|
139
|
+
| `chosen_alpha_` | selected ridge strength α |
|
|
140
|
+
| `uses_symbolic_` | whether the LOO/holdout checks kept the symbolic columns |
|
|
141
|
+
| `symbolic_columns_` | number of symbolic columns in the final model |
|
|
142
|
+
| `champion_formula_` | best expression found, in infix (e.g. `0.9228*exp(x0*x1) - 0.0061`) |
|
|
143
|
+
|
|
144
|
+
## Usage notes
|
|
145
|
+
|
|
146
|
+
- `X` must be a finite 1D or 2D numeric array; `y` must be one finite numeric target per row. Multi-output regression, categorical encoding, and missing-value imputation are not built in — encode and impute before calling `fit`.
|
|
147
|
+
- Fit on training data only, tune on validation data, and report on an untouched test set. The internal LOO-CV protects hyperparameter selection, but it is not a substitute for a held-out evaluation.
|
|
148
|
+
- For 1D inputs the Fourier projection is a deterministic log-spaced frequency grid up to `max_frequency`, which suits signal-like data; for `d ≥ 2` the projection is a seeded random Gaussian matrix.
|
|
149
|
+
- `score(X, y)` returns the coefficient of determination R² (1.0 is perfect, 0.0 is no better than predicting the mean).
|
|
150
|
+
|
|
151
|
+
## Build from source
|
|
152
|
+
|
|
153
|
+
```bash
|
|
154
|
+
git clone --recurse-submodules https://github.com/zeusnotjupiter/BlackRubby.git
|
|
155
|
+
cd BlackRubby
|
|
156
|
+
python -m pip install build
|
|
157
|
+
python -m build
|
|
158
|
+
```
|
|
159
|
+
|
|
160
|
+
(If you cloned without `--recurse-submodules`, run `git submodule update --init` first — the Eigen headers under `vendor/eigen` are required.)
|
|
161
|
+
|
|
162
|
+
For an editable development build:
|
|
163
|
+
|
|
164
|
+
```bash
|
|
165
|
+
python -m pip install scikit-build-core pybind11 cmake numpy
|
|
166
|
+
python -m pip install -e . --no-build-isolation
|
|
167
|
+
```
|
|
168
|
+
|
|
169
|
+
Run the tests with `python -m pip install pytest` then `python -m pytest tests`.
|
|
170
|
+
|
|
171
|
+
## License
|
|
172
|
+
|
|
173
|
+
Apache License 2.0 — see [LICENSE](LICENSE).
|
|
@@ -0,0 +1,149 @@
|
|
|
1
|
+
# BlackRubby Regressor
|
|
2
|
+
|
|
3
|
+
BlackRubby is a numeric regression estimator that fuses two complementary learners:
|
|
4
|
+
|
|
5
|
+
- **Rubby** — a symbolic search that evolves closed-form candidate expressions (e.g. `sqrt(x0^3 / (x1 + x2))`) on a 3×3×3 cube-walk genome.
|
|
6
|
+
- **Black** — a random-Fourier-feature ridge regression that fits a smooth kernel model over the inputs.
|
|
7
|
+
|
|
8
|
+
The final model is a single ridge over `[Fourier features | standardized inputs | symbolic columns]`, where the bandwidth, ridge strength, and whether to trust the symbolic columns are all chosen by exact leave-one-out cross-validation. It handles multiple numeric input features and one numeric target, with no Python-side dependencies beyond NumPy.
|
|
9
|
+
|
|
10
|
+
```python
|
|
11
|
+
import numpy as np
|
|
12
|
+
from blackrubby import BlackRubbyRegressor
|
|
13
|
+
|
|
14
|
+
rng = np.random.default_rng(7)
|
|
15
|
+
X = rng.uniform(-1, 1, size=(512, 3))
|
|
16
|
+
y = np.sin(X[:, 0] * X[:, 1]) + 0.2 * X[:, 2]
|
|
17
|
+
|
|
18
|
+
model = BlackRubbyRegressor(expansion_dim=256, random_state=7)
|
|
19
|
+
model.fit(X[:400], y[:400])
|
|
20
|
+
print("held-out R2:", model.score(X[400:], y[400:]))
|
|
21
|
+
print("champion:", model.champion_formula_)
|
|
22
|
+
```
|
|
23
|
+
|
|
24
|
+
## Install
|
|
25
|
+
|
|
26
|
+
```
|
|
27
|
+
pip install blackrubby
|
|
28
|
+
```
|
|
29
|
+
|
|
30
|
+
Pre-built wheels are published for CPython 3.10–3.15 on Linux (x86_64), Windows (x64), and macOS (Intel and Apple Silicon). On a supported platform this installs in seconds with no compiler.
|
|
31
|
+
|
|
32
|
+
Building from source requires only a C++17 compiler and CMake. Eigen 3.4.0 is vendored under `vendor/eigen`, so **no network access is needed**; set `EIGEN3_INCLUDE_DIR` to use a different Eigen installation.
|
|
33
|
+
|
|
34
|
+
## How it works
|
|
35
|
+
|
|
36
|
+
Given training pairs `(x_i, y_i)` with `x_i ∈ R^d`, BlackRubby fits a linear model in a lifted feature space:
|
|
37
|
+
|
|
38
|
+
```
|
|
39
|
+
ŷ(x) = wᵀ Φ(x) + b
|
|
40
|
+
```
|
|
41
|
+
|
|
42
|
+
The feature map `Φ(x)` has three blocks:
|
|
43
|
+
|
|
44
|
+
1. **Random Fourier features.** `D` cos/sin pairs approximating a stationary kernel:
|
|
45
|
+
`Φ_fourier(x) = (1/√D) [cos(W x̂ / γ), sin(W x̂ / γ)]`, where `x̂` is the standardized input, `W ∈ R^{D×d}` has standard-normal entries, and `γ` is the bandwidth. This is the classic Rahimi–Recht approximation — as `D → ∞`, the inner product `Φ(x)ᵀΦ(x')` converges to the Gaussian kernel `k(x, x') = exp(-‖x̂ - x̂'‖² / 2γ²)`.
|
|
46
|
+
|
|
47
|
+
2. **Standardized inputs.** The raw `(x - μ) / σ` block, which lets the model represent exactly-linear components without spending Fourier capacity on them.
|
|
48
|
+
|
|
49
|
+
3. **Symbolic columns (Rubby).** Up to `sym_top_k` expressions found by the search, each standardized to zero mean and unit variance. These give the ridge a direct handle on non-smooth or strongly multiplicative structure (ratios, square roots, powers) that Fourier features approximate only slowly.
|
|
50
|
+
|
|
51
|
+
The ridge weights minimize the regularized squared error:
|
|
52
|
+
|
|
53
|
+
```
|
|
54
|
+
w* = argmin_w Σ_i (y_i - wᵀΦ(x_i) - b)² + α ‖w‖²
|
|
55
|
+
```
|
|
56
|
+
|
|
57
|
+
### Hyperparameters by exact leave-one-out CV
|
|
58
|
+
|
|
59
|
+
`bandwidth γ`, ridge strength `α`, and the symbolic on/off decision are chosen on a `select_rows`-row subset using the **exact leave-one-out** formula for ridge regression. One eigendecomposition of the centered Gram matrix gives the LOO residual for every `α` in the grid simultaneously:
|
|
60
|
+
|
|
61
|
+
```
|
|
62
|
+
e_i^LOO = (y_i - ŷ_i) / (1 - h_i), h = U diag(λ_j / (λ_j + nα)) Uᵀ
|
|
63
|
+
```
|
|
64
|
+
|
|
65
|
+
so the model only leans on the symbolic columns when they demonstrably reduce out-of-sample error. A 2-fold holdout at full feature width re-checks the symbolic decision, because the reduced-width selection screen can mis-rank those columns.
|
|
66
|
+
|
|
67
|
+
### The Rubby symbolic search
|
|
68
|
+
|
|
69
|
+
Candidate expressions are encoded as a walk on a 3×3×3 cube whose 27 cells each hold one operation or operand (`const`, `x_k`, `+`, `-`, `*`, `/`, `log`, `exp`, `sqrt`, `abs`, `x²`, `x³`). Starting from the corner cell, the genome's path (`sym_turns` moves, each ±x/±y/±z with wraparound) visits cells in order, and the visited nodes form a stack program evaluated column-wise over the data. Each candidate gets a least-squares scale and offset (`a·f(x) + b`), so the search only has to find the right *shape*.
|
|
70
|
+
|
|
71
|
+
A generation consists of tournament selection (with a path-distance diversity check), uniform crossover over cube cells, point mutation, occasional MCTS refinement of the walk itself (UCT over path prefixes), and a periodic Levenberg–Marquardt polish of the constants on the active path. Fitness is normalized mean squared error, `NMSE = MSE / Var(y)`. The best distinct expressions form a hall of fame that feeds the ridge.
|
|
72
|
+
|
|
73
|
+
The search runs on a strided `sym_rows`-row subsample for `sym_generations` generations and is fully seeded by `random_state`.
|
|
74
|
+
|
|
75
|
+
### Final solve
|
|
76
|
+
|
|
77
|
+
The full model is solved in primal form over up to `solve_rows` rows (auto-capped at `max(50000, 20 × n_features)`), accumulating the centered Gram matrix `G = ΦᵀΦ` in batches and applying a Cholesky solve with an LDLT fallback.
|
|
78
|
+
|
|
79
|
+
## Reproducibility
|
|
80
|
+
|
|
81
|
+
With the default `sym_time_limit=0`, the symbolic search is generation-bounded and **fully deterministic**: the same `random_state`, data, and parameters produce a bit-identical model on every run, regardless of thread count or machine load. Setting `sym_time_limit > 0` switches to a wall-clock cap, which can stop at different generations on different runs and therefore trades reproducibility for a hard time budget.
|
|
82
|
+
|
|
83
|
+
## API
|
|
84
|
+
|
|
85
|
+
```python
|
|
86
|
+
BlackRubbyRegressor(
|
|
87
|
+
expansion_dim=1024, # Fourier cos/sin pairs (D)
|
|
88
|
+
alpha=0.0, # ridge strength; 0 = auto by LOO-CV
|
|
89
|
+
bandwidth=0.0, # Fourier bandwidth γ; 0 = auto by LOO-CV
|
|
90
|
+
random_state=42, # seed for projections and symbolic search
|
|
91
|
+
use_symbolic=True, # run the Rubby search
|
|
92
|
+
sym_population=128, # GA population size
|
|
93
|
+
sym_generations=100, # GA generations (when time limit is 0)
|
|
94
|
+
sym_rows=1024, # rows used by the symbolic search
|
|
95
|
+
sym_top_k=6, # symbolic columns offered to the ridge
|
|
96
|
+
sym_time_limit=0.0, # seconds; 0 = generation-bounded (reproducible)
|
|
97
|
+
select_rows=2048, # rows used for hyperparameter selection
|
|
98
|
+
select_dim=128, # Fourier pairs used during selection
|
|
99
|
+
batch_size=2048, # rows per block in feature assembly
|
|
100
|
+
solve_rows=-1, # rows in the final solve; -1 = auto cap, 0 = all
|
|
101
|
+
max_frequency=54.598, # largest 1D frequency (standardized units); 1D inputs only
|
|
102
|
+
)
|
|
103
|
+
```
|
|
104
|
+
|
|
105
|
+
Methods: `fit(X, y)`, `predict(X)`, `score(X, y)` (R²), `get_params()`, `set_params(**params)`.
|
|
106
|
+
|
|
107
|
+
After fitting, the following attributes are available:
|
|
108
|
+
|
|
109
|
+
| Attribute | Meaning |
|
|
110
|
+
|---|---|
|
|
111
|
+
| `n_features_in_` | number of input columns seen during `fit` |
|
|
112
|
+
| `fit_seconds_` | total wall-clock fit time |
|
|
113
|
+
| `symbolic_seconds_` | time spent in the Rubby search |
|
|
114
|
+
| `chosen_bandwidth_` | selected Fourier bandwidth γ |
|
|
115
|
+
| `chosen_alpha_` | selected ridge strength α |
|
|
116
|
+
| `uses_symbolic_` | whether the LOO/holdout checks kept the symbolic columns |
|
|
117
|
+
| `symbolic_columns_` | number of symbolic columns in the final model |
|
|
118
|
+
| `champion_formula_` | best expression found, in infix (e.g. `0.9228*exp(x0*x1) - 0.0061`) |
|
|
119
|
+
|
|
120
|
+
## Usage notes
|
|
121
|
+
|
|
122
|
+
- `X` must be a finite 1D or 2D numeric array; `y` must be one finite numeric target per row. Multi-output regression, categorical encoding, and missing-value imputation are not built in — encode and impute before calling `fit`.
|
|
123
|
+
- Fit on training data only, tune on validation data, and report on an untouched test set. The internal LOO-CV protects hyperparameter selection, but it is not a substitute for a held-out evaluation.
|
|
124
|
+
- For 1D inputs the Fourier projection is a deterministic log-spaced frequency grid up to `max_frequency`, which suits signal-like data; for `d ≥ 2` the projection is a seeded random Gaussian matrix.
|
|
125
|
+
- `score(X, y)` returns the coefficient of determination R² (1.0 is perfect, 0.0 is no better than predicting the mean).
|
|
126
|
+
|
|
127
|
+
## Build from source
|
|
128
|
+
|
|
129
|
+
```bash
|
|
130
|
+
git clone --recurse-submodules https://github.com/zeusnotjupiter/BlackRubby.git
|
|
131
|
+
cd BlackRubby
|
|
132
|
+
python -m pip install build
|
|
133
|
+
python -m build
|
|
134
|
+
```
|
|
135
|
+
|
|
136
|
+
(If you cloned without `--recurse-submodules`, run `git submodule update --init` first — the Eigen headers under `vendor/eigen` are required.)
|
|
137
|
+
|
|
138
|
+
For an editable development build:
|
|
139
|
+
|
|
140
|
+
```bash
|
|
141
|
+
python -m pip install scikit-build-core pybind11 cmake numpy
|
|
142
|
+
python -m pip install -e . --no-build-isolation
|
|
143
|
+
```
|
|
144
|
+
|
|
145
|
+
Run the tests with `python -m pip install pytest` then `python -m pytest tests`.
|
|
146
|
+
|
|
147
|
+
## License
|
|
148
|
+
|
|
149
|
+
Apache License 2.0 — see [LICENSE](LICENSE).
|