blackrubby 0.1.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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  1. blackrubby-0.1.2/.gitattributes +2 -0
  2. blackrubby-0.1.2/.github/workflows/wheels.yml +71 -0
  3. blackrubby-0.1.2/.gitignore +8 -0
  4. blackrubby-0.1.2/.gitmodules +3 -0
  5. blackrubby-0.1.2/CMakeLists.txt +51 -0
  6. blackrubby-0.1.2/LICENSE +201 -0
  7. blackrubby-0.1.2/PKG-INFO +173 -0
  8. blackrubby-0.1.2/README.md +149 -0
  9. blackrubby-0.1.2/pyproject.toml +56 -0
  10. blackrubby-0.1.2/src/blackrubby/__init__.py +6 -0
  11. blackrubby-0.1.2/src/core.cpp +249 -0
  12. blackrubby-0.1.2/tests/test_api.py +35 -0
  13. blackrubby-0.1.2/vendor/blackrubby.hpp +13 -0
  14. blackrubby-0.1.2/vendor/blackrubby_impl.cpp +1982 -0
  15. blackrubby-0.1.2/vendor/eigen/.git +1 -0
  16. blackrubby-0.1.2/vendor/eigen/.gitignore +38 -0
  17. blackrubby-0.1.2/vendor/eigen/.gitlab/issue_templates/Bug Report.md +69 -0
  18. blackrubby-0.1.2/vendor/eigen/.gitlab/issue_templates/Feature Request.md +7 -0
  19. blackrubby-0.1.2/vendor/eigen/.gitlab/merge_request_templates/Merge Request Template.md +26 -0
  20. blackrubby-0.1.2/vendor/eigen/.gitlab-ci.yml +23 -0
  21. blackrubby-0.1.2/vendor/eigen/.hgeol +11 -0
  22. blackrubby-0.1.2/vendor/eigen/CMakeLists.txt +653 -0
  23. blackrubby-0.1.2/vendor/eigen/COPYING.APACHE +203 -0
  24. blackrubby-0.1.2/vendor/eigen/COPYING.BSD +26 -0
  25. blackrubby-0.1.2/vendor/eigen/COPYING.GPL +674 -0
  26. blackrubby-0.1.2/vendor/eigen/COPYING.LGPL +502 -0
  27. blackrubby-0.1.2/vendor/eigen/COPYING.MINPACK +51 -0
  28. blackrubby-0.1.2/vendor/eigen/COPYING.MPL2 +373 -0
  29. blackrubby-0.1.2/vendor/eigen/COPYING.README +18 -0
  30. blackrubby-0.1.2/vendor/eigen/CTestConfig.cmake +17 -0
  31. blackrubby-0.1.2/vendor/eigen/CTestCustom.cmake.in +4 -0
  32. blackrubby-0.1.2/vendor/eigen/Eigen/Cholesky +45 -0
  33. blackrubby-0.1.2/vendor/eigen/Eigen/CholmodSupport +48 -0
  34. blackrubby-0.1.2/vendor/eigen/Eigen/Core +384 -0
  35. blackrubby-0.1.2/vendor/eigen/Eigen/Dense +7 -0
  36. blackrubby-0.1.2/vendor/eigen/Eigen/Eigen +2 -0
  37. blackrubby-0.1.2/vendor/eigen/Eigen/Eigenvalues +60 -0
  38. blackrubby-0.1.2/vendor/eigen/Eigen/Geometry +59 -0
  39. blackrubby-0.1.2/vendor/eigen/Eigen/Householder +29 -0
  40. blackrubby-0.1.2/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  41. blackrubby-0.1.2/vendor/eigen/Eigen/Jacobi +32 -0
  42. blackrubby-0.1.2/vendor/eigen/Eigen/KLUSupport +41 -0
  43. blackrubby-0.1.2/vendor/eigen/Eigen/LU +47 -0
  44. blackrubby-0.1.2/vendor/eigen/Eigen/MetisSupport +35 -0
  45. blackrubby-0.1.2/vendor/eigen/Eigen/OrderingMethods +70 -0
  46. blackrubby-0.1.2/vendor/eigen/Eigen/PaStiXSupport +49 -0
  47. blackrubby-0.1.2/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. blackrubby-0.1.2/vendor/eigen/Eigen/QR +50 -0
  49. blackrubby-0.1.2/vendor/eigen/Eigen/QtAlignedMalloc +39 -0
  50. blackrubby-0.1.2/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. blackrubby-0.1.2/vendor/eigen/Eigen/SVD +50 -0
  52. blackrubby-0.1.2/vendor/eigen/Eigen/Sparse +34 -0
  53. blackrubby-0.1.2/vendor/eigen/Eigen/SparseCholesky +37 -0
  54. blackrubby-0.1.2/vendor/eigen/Eigen/SparseCore +69 -0
  55. blackrubby-0.1.2/vendor/eigen/Eigen/SparseLU +50 -0
  56. blackrubby-0.1.2/vendor/eigen/Eigen/SparseQR +36 -0
  57. blackrubby-0.1.2/vendor/eigen/Eigen/StdDeque +27 -0
  58. blackrubby-0.1.2/vendor/eigen/Eigen/StdList +26 -0
  59. blackrubby-0.1.2/vendor/eigen/Eigen/StdVector +27 -0
  60. blackrubby-0.1.2/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. blackrubby-0.1.2/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. blackrubby-0.1.2/vendor/eigen/Eigen/src/Cholesky/LDLT.h +688 -0
  63. blackrubby-0.1.2/vendor/eigen/Eigen/src/Cholesky/LLT.h +558 -0
  64. blackrubby-0.1.2/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. blackrubby-0.1.2/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  66. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  67. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Array.h +417 -0
  68. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  69. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  70. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  71. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +1010 -0
  72. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  73. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  74. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Block.h +448 -0
  75. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/BooleanRedux.h +162 -0
  76. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CommaInitializer.h +164 -0
  77. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  78. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1741 -0
  79. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CoreIterators.h +132 -0
  80. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  81. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  82. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  83. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  84. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +132 -0
  85. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DenseBase.h +701 -0
  86. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  87. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DenseStorage.h +652 -0
  88. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Diagonal.h +258 -0
  89. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +391 -0
  90. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  91. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  92. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/EigenBase.h +160 -0
  93. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  94. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  95. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/GeneralProduct.h +465 -0
  96. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +1040 -0
  97. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +194 -0
  98. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/IO.h +258 -0
  99. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  100. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Inverse.h +117 -0
  101. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  102. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MapBase.h +310 -0
  103. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MathFunctions.h +2057 -0
  104. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  105. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Matrix.h +565 -0
  106. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/MatrixBase.h +547 -0
  107. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/NestByValue.h +85 -0
  108. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/NoAlias.h +109 -0
  109. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/NumTraits.h +335 -0
  110. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  111. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +605 -0
  112. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1128 -0
  113. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Product.h +191 -0
  114. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1179 -0
  115. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Random.h +218 -0
  116. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Redux.h +515 -0
  117. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Ref.h +381 -0
  118. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  119. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  120. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/ReturnByValue.h +119 -0
  121. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Reverse.h +217 -0
  122. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Select.h +164 -0
  123. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +365 -0
  124. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  125. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  126. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  127. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/SolverBase.h +168 -0
  128. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/StableNorm.h +251 -0
  129. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  130. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Stride.h +116 -0
  131. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Swap.h +68 -0
  132. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Transpose.h +464 -0
  133. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Transpositions.h +386 -0
  134. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +1001 -0
  135. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  136. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +784 -0
  137. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/Visitor.h +381 -0
  138. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  139. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  140. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  141. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  142. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  143. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  144. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  145. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  146. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  147. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  148. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  149. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  150. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  151. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  152. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  153. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  154. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  155. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  156. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  157. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  158. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  159. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  160. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  161. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  162. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  163. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  164. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  165. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  166. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  167. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  168. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  169. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  170. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  171. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  172. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  173. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  174. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  175. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  176. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  177. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  178. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  179. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  180. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  181. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  182. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  183. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  184. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  185. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  186. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  187. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  188. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  189. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  190. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +166 -0
  191. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  192. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  193. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  194. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  195. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  196. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  197. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  198. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  199. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  200. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +180 -0
  201. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  202. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  203. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  204. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  205. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  206. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  207. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  208. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  209. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  210. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  211. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  212. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  213. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  214. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +583 -0
  215. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  216. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Constants.h +563 -0
  217. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  218. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  219. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  220. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  221. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/MKL_support.h +137 -0
  222. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Macros.h +1464 -0
  223. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Memory.h +1163 -0
  224. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/Meta.h +812 -0
  225. blackrubby-0.1.2/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
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  1732. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_intdiv.cpp +147 -0
  1733. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_io.cpp +136 -0
  1734. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_layout_swap.cpp +61 -0
  1735. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_layout_swap_sycl.cpp +126 -0
  1736. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_lvalue.cpp +42 -0
  1737. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_map.cpp +327 -0
  1738. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_math.cpp +46 -0
  1739. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_math_sycl.cpp +105 -0
  1740. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_mixed_indices.cpp +53 -0
  1741. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_morphing.cpp +565 -0
  1742. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_morphing_sycl.cpp +386 -0
  1743. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_move.cpp +76 -0
  1744. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_notification.cpp +64 -0
  1745. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_complex.cpp +103 -0
  1746. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_const_values.cpp +105 -0
  1747. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_float16_gpu.cu +488 -0
  1748. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_of_strings.cpp +152 -0
  1749. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_padding.cpp +93 -0
  1750. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_padding_sycl.cpp +157 -0
  1751. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_patch.cpp +172 -0
  1752. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_patch_sycl.cpp +249 -0
  1753. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_random.cpp +86 -0
  1754. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_random_gpu.cu +86 -0
  1755. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_random_sycl.cpp +100 -0
  1756. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reduction.cpp +532 -0
  1757. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reduction_gpu.cu +154 -0
  1758. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reduction_sycl.cpp +1014 -0
  1759. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_ref.cpp +248 -0
  1760. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reverse.cpp +190 -0
  1761. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_reverse_sycl.cpp +253 -0
  1762. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_roundings.cpp +62 -0
  1763. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_scan.cpp +110 -0
  1764. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_scan_gpu.cu +78 -0
  1765. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_scan_sycl.cpp +141 -0
  1766. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_shuffling.cpp +283 -0
  1767. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_shuffling_sycl.cpp +117 -0
  1768. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_simple.cpp +327 -0
  1769. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_striding.cpp +119 -0
  1770. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_striding_sycl.cpp +203 -0
  1771. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_sugar.cpp +81 -0
  1772. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_sycl.cpp +361 -0
  1773. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_symmetry.cpp +818 -0
  1774. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_thread_local.cpp +149 -0
  1775. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_thread_pool.cpp +721 -0
  1776. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_trace.cpp +172 -0
  1777. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_uint128.cpp +160 -0
  1778. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_volume_patch.cpp +112 -0
  1779. blackrubby-0.1.2/vendor/eigen/unsupported/test/cxx11_tensor_volume_patch_sycl.cpp +222 -0
  1780. blackrubby-0.1.2/vendor/eigen/unsupported/test/dgmres.cpp +31 -0
  1781. blackrubby-0.1.2/vendor/eigen/unsupported/test/forward_adolc.cpp +141 -0
  1782. blackrubby-0.1.2/vendor/eigen/unsupported/test/gmres.cpp +31 -0
  1783. blackrubby-0.1.2/vendor/eigen/unsupported/test/idrs.cpp +27 -0
  1784. blackrubby-0.1.2/vendor/eigen/unsupported/test/kronecker_product.cpp +252 -0
  1785. blackrubby-0.1.2/vendor/eigen/unsupported/test/levenberg_marquardt.cpp +1477 -0
  1786. blackrubby-0.1.2/vendor/eigen/unsupported/test/matrix_exponential.cpp +141 -0
  1787. blackrubby-0.1.2/vendor/eigen/unsupported/test/matrix_function.cpp +227 -0
  1788. blackrubby-0.1.2/vendor/eigen/unsupported/test/matrix_functions.h +67 -0
  1789. blackrubby-0.1.2/vendor/eigen/unsupported/test/matrix_power.cpp +204 -0
  1790. blackrubby-0.1.2/vendor/eigen/unsupported/test/matrix_square_root.cpp +31 -0
  1791. blackrubby-0.1.2/vendor/eigen/unsupported/test/minres.cpp +44 -0
  1792. blackrubby-0.1.2/vendor/eigen/unsupported/test/mpreal_support.cpp +66 -0
  1793. blackrubby-0.1.2/vendor/eigen/unsupported/test/openglsupport.cpp +600 -0
  1794. blackrubby-0.1.2/vendor/eigen/unsupported/test/polynomialsolver.cpp +232 -0
  1795. blackrubby-0.1.2/vendor/eigen/unsupported/test/polynomialutils.cpp +113 -0
  1796. blackrubby-0.1.2/vendor/eigen/unsupported/test/sparse_extra.cpp +226 -0
  1797. blackrubby-0.1.2/vendor/eigen/unsupported/test/special_functions.cpp +497 -0
  1798. blackrubby-0.1.2/vendor/eigen/unsupported/test/special_packetmath.cpp +149 -0
  1799. blackrubby-0.1.2/vendor/eigen/unsupported/test/splines.cpp +281 -0
@@ -0,0 +1,2 @@
1
+ # Auto detect text files and perform LF normalization
2
+ * text=auto
@@ -0,0 +1,71 @@
1
+ name: Build and test wheels
2
+
3
+ on:
4
+ push:
5
+ tags: ["v*"]
6
+ workflow_dispatch:
7
+ inputs:
8
+ publish_to_pypi:
9
+ description: "Publish the already-built wheels to PyPI (requires license and trusted publisher setup)"
10
+ required: true
11
+ type: boolean
12
+ default: false
13
+
14
+ jobs:
15
+ wheels:
16
+ name: ${{ matrix.os }} wheels
17
+ runs-on: ${{ matrix.os }}
18
+ strategy:
19
+ fail-fast: false
20
+ matrix:
21
+ os: [ubuntu-latest, windows-latest, macos-15]
22
+ steps:
23
+ - uses: actions/checkout@v4
24
+ with:
25
+ submodules: recursive
26
+ - uses: actions/setup-python@v5
27
+ with:
28
+ python-version: "3.12"
29
+ - run: python -m pip install --upgrade cibuildwheel
30
+ - run: python -m cibuildwheel --output-dir wheelhouse
31
+ env:
32
+ CIBW_BUILD: cp310-* cp311-* cp312-* cp313-* cp314-* cp315-*
33
+ CIBW_SKIP: "*-win32 *-manylinux_i686 *-musllinux_* *-macosx_universal2"
34
+ CIBW_TEST_REQUIRES: pytest numpy
35
+ CIBW_TEST_COMMAND: pytest {project}/tests
36
+ - uses: actions/upload-artifact@v4
37
+ with:
38
+ name: wheels-${{ matrix.os }}
39
+ path: wheelhouse/*.whl
40
+
41
+ sdist:
42
+ name: Source distribution
43
+ runs-on: ubuntu-latest
44
+ steps:
45
+ - uses: actions/checkout@v4
46
+ with:
47
+ submodules: recursive
48
+ - uses: actions/setup-python@v5
49
+ with:
50
+ python-version: "3.12"
51
+ - run: python -m pip install --upgrade build
52
+ - run: python -m build --sdist
53
+ - uses: actions/upload-artifact@v4
54
+ with:
55
+ name: sdist
56
+ path: dist/*.tar.gz
57
+
58
+ publish:
59
+ if: github.event_name == 'workflow_dispatch' && inputs.publish_to_pypi
60
+ needs: [wheels, sdist]
61
+ runs-on: ubuntu-latest
62
+ permissions:
63
+ id-token: write
64
+ environment: pypi
65
+ steps:
66
+ - uses: actions/download-artifact@v4
67
+ with:
68
+ pattern: "*"
69
+ path: dist
70
+ merge-multiple: true
71
+ - uses: pypa/gh-action-pypi-publish@release/v1
@@ -0,0 +1,8 @@
1
+ build/
2
+ dist/
3
+ _dist/
4
+ wheelhouse/
5
+ *.egg-info/
6
+ __pycache__/
7
+ *.py[cod]
8
+ blackrubby_package/
@@ -0,0 +1,3 @@
1
+ [submodule "vendor/eigen"]
2
+ path = vendor/eigen
3
+ url = https://github.com/eigen-mirror/eigen.git
@@ -0,0 +1,51 @@
1
+ cmake_minimum_required(VERSION 3.18)
2
+ project(blackrubby_native LANGUAGES CXX)
3
+
4
+ find_package(Python REQUIRED COMPONENTS Interpreter Development.Module)
5
+ find_package(pybind11 CONFIG REQUIRED)
6
+
7
+ if(DEFINED ENV{EIGEN3_INCLUDE_DIR})
8
+ find_path(EIGEN3_INCLUDE_DIR Eigen/Dense HINTS "$ENV{EIGEN3_INCLUDE_DIR}" NO_DEFAULT_PATH)
9
+ endif()
10
+ if(NOT EIGEN3_INCLUDE_DIR)
11
+ find_path(EIGEN3_INCLUDE_DIR Eigen/Dense HINTS "${CMAKE_CURRENT_SOURCE_DIR}/../eigen-3.4.0")
12
+ endif()
13
+ if(NOT EIGEN3_INCLUDE_DIR)
14
+ find_path(EIGEN3_INCLUDE_DIR Eigen/Dense HINTS "${CMAKE_CURRENT_SOURCE_DIR}/vendor/eigen")
15
+ endif()
16
+ if(NOT EIGEN3_INCLUDE_DIR)
17
+ message(STATUS "Vendored Eigen not found; fetching Eigen 3.4.0 (set EIGEN3_INCLUDE_DIR to skip the download)")
18
+ include(FetchContent)
19
+ set(BUILD_TESTING OFF CACHE BOOL "" FORCE)
20
+ set(EIGEN_BUILD_TESTING OFF CACHE BOOL "" FORCE)
21
+ set(EIGEN_BUILD_DOC OFF CACHE BOOL "" FORCE)
22
+ set(EIGEN_BUILD_PKGCONFIG OFF CACHE BOOL "" FORCE)
23
+ FetchContent_Declare(eigen
24
+ URL https://github.com/eigen-mirror/eigen/archive/refs/tags/3.4.0.tar.gz
25
+ URL_HASH SHA256=8586084f71f9bde545ee7fa6d00288b264a2b7ac3607b974e54d13e7162c1c72
26
+ DOWNLOAD_EXTRACT_TIMESTAMP TRUE
27
+ )
28
+ FetchContent_GetProperties(eigen)
29
+ if(NOT eigen_POPULATED)
30
+ FetchContent_Populate(eigen)
31
+ endif()
32
+ set(EIGEN3_INCLUDE_DIR "${eigen_SOURCE_DIR}")
33
+ endif()
34
+
35
+ pybind11_add_module(_core MODULE src/core.cpp)
36
+ target_compile_features(_core PRIVATE cxx_std_17)
37
+ target_compile_definitions(_core PRIVATE BLACKRUBBY_NO_MAIN)
38
+ target_include_directories(_core PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/vendor")
39
+ target_include_directories(_core SYSTEM PRIVATE "${EIGEN3_INCLUDE_DIR}")
40
+ if(MSVC)
41
+ target_compile_options(_core PRIVATE /O2 /EHsc)
42
+ else()
43
+ target_compile_options(_core PRIVATE -O3)
44
+ endif()
45
+
46
+ find_package(OpenMP QUIET)
47
+ if(OpenMP_CXX_FOUND)
48
+ target_link_libraries(_core PRIVATE OpenMP::OpenMP_CXX)
49
+ endif()
50
+
51
+ install(TARGETS _core DESTINATION blackrubby)
@@ -0,0 +1,201 @@
1
+ Apache License
2
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3
+ http://www.apache.org/licenses/
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@@ -0,0 +1,173 @@
1
+ Metadata-Version: 2.4
2
+ Name: blackrubby
3
+ Version: 0.1.2
4
+ Summary: C++ symbolic-plus-kernel regression estimator with a NumPy Python API
5
+ Keywords: regression,symbolic regression,random Fourier features,machine learning
6
+ License-Expression: Apache-2.0
7
+ License-File: LICENSE
8
+ Classifier: Development Status :: 3 - Alpha
9
+ Classifier: Intended Audience :: Science/Research
10
+ Classifier: Programming Language :: C++
11
+ Classifier: Programming Language :: Python :: 3
12
+ Classifier: Programming Language :: Python :: 3.10
13
+ Classifier: Programming Language :: Python :: 3.11
14
+ Classifier: Programming Language :: Python :: 3.12
15
+ Classifier: Programming Language :: Python :: 3.13
16
+ Classifier: Programming Language :: Python :: 3.14
17
+ Classifier: Programming Language :: Python :: 3.15
18
+ Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
19
+ Requires-Python: >=3.10
20
+ Requires-Dist: numpy>=1.24
21
+ Provides-Extra: test
22
+ Requires-Dist: pytest>=8; extra == "test"
23
+ Description-Content-Type: text/markdown
24
+
25
+ # BlackRubby Regressor
26
+
27
+ BlackRubby is a numeric regression estimator that fuses two complementary learners:
28
+
29
+ - **Rubby** — a symbolic search that evolves closed-form candidate expressions (e.g. `sqrt(x0^3 / (x1 + x2))`) on a 3×3×3 cube-walk genome.
30
+ - **Black** — a random-Fourier-feature ridge regression that fits a smooth kernel model over the inputs.
31
+
32
+ The final model is a single ridge over `[Fourier features | standardized inputs | symbolic columns]`, where the bandwidth, ridge strength, and whether to trust the symbolic columns are all chosen by exact leave-one-out cross-validation. It handles multiple numeric input features and one numeric target, with no Python-side dependencies beyond NumPy.
33
+
34
+ ```python
35
+ import numpy as np
36
+ from blackrubby import BlackRubbyRegressor
37
+
38
+ rng = np.random.default_rng(7)
39
+ X = rng.uniform(-1, 1, size=(512, 3))
40
+ y = np.sin(X[:, 0] * X[:, 1]) + 0.2 * X[:, 2]
41
+
42
+ model = BlackRubbyRegressor(expansion_dim=256, random_state=7)
43
+ model.fit(X[:400], y[:400])
44
+ print("held-out R2:", model.score(X[400:], y[400:]))
45
+ print("champion:", model.champion_formula_)
46
+ ```
47
+
48
+ ## Install
49
+
50
+ ```
51
+ pip install blackrubby
52
+ ```
53
+
54
+ Pre-built wheels are published for CPython 3.10–3.15 on Linux (x86_64), Windows (x64), and macOS (Intel and Apple Silicon). On a supported platform this installs in seconds with no compiler.
55
+
56
+ Building from source requires only a C++17 compiler and CMake. Eigen 3.4.0 is vendored under `vendor/eigen`, so **no network access is needed**; set `EIGEN3_INCLUDE_DIR` to use a different Eigen installation.
57
+
58
+ ## How it works
59
+
60
+ Given training pairs `(x_i, y_i)` with `x_i ∈ R^d`, BlackRubby fits a linear model in a lifted feature space:
61
+
62
+ ```
63
+ ŷ(x) = wᵀ Φ(x) + b
64
+ ```
65
+
66
+ The feature map `Φ(x)` has three blocks:
67
+
68
+ 1. **Random Fourier features.** `D` cos/sin pairs approximating a stationary kernel:
69
+ `Φ_fourier(x) = (1/√D) [cos(W x̂ / γ), sin(W x̂ / γ)]`, where `x̂` is the standardized input, `W ∈ R^{D×d}` has standard-normal entries, and `γ` is the bandwidth. This is the classic Rahimi–Recht approximation — as `D → ∞`, the inner product `Φ(x)ᵀΦ(x')` converges to the Gaussian kernel `k(x, x') = exp(-‖x̂ - x̂'‖² / 2γ²)`.
70
+
71
+ 2. **Standardized inputs.** The raw `(x - μ) / σ` block, which lets the model represent exactly-linear components without spending Fourier capacity on them.
72
+
73
+ 3. **Symbolic columns (Rubby).** Up to `sym_top_k` expressions found by the search, each standardized to zero mean and unit variance. These give the ridge a direct handle on non-smooth or strongly multiplicative structure (ratios, square roots, powers) that Fourier features approximate only slowly.
74
+
75
+ The ridge weights minimize the regularized squared error:
76
+
77
+ ```
78
+ w* = argmin_w Σ_i (y_i - wᵀΦ(x_i) - b)² + α ‖w‖²
79
+ ```
80
+
81
+ ### Hyperparameters by exact leave-one-out CV
82
+
83
+ `bandwidth γ`, ridge strength `α`, and the symbolic on/off decision are chosen on a `select_rows`-row subset using the **exact leave-one-out** formula for ridge regression. One eigendecomposition of the centered Gram matrix gives the LOO residual for every `α` in the grid simultaneously:
84
+
85
+ ```
86
+ e_i^LOO = (y_i - ŷ_i) / (1 - h_i), h = U diag(λ_j / (λ_j + nα)) Uᵀ
87
+ ```
88
+
89
+ so the model only leans on the symbolic columns when they demonstrably reduce out-of-sample error. A 2-fold holdout at full feature width re-checks the symbolic decision, because the reduced-width selection screen can mis-rank those columns.
90
+
91
+ ### The Rubby symbolic search
92
+
93
+ Candidate expressions are encoded as a walk on a 3×3×3 cube whose 27 cells each hold one operation or operand (`const`, `x_k`, `+`, `-`, `*`, `/`, `log`, `exp`, `sqrt`, `abs`, `x²`, `x³`). Starting from the corner cell, the genome's path (`sym_turns` moves, each ±x/±y/±z with wraparound) visits cells in order, and the visited nodes form a stack program evaluated column-wise over the data. Each candidate gets a least-squares scale and offset (`a·f(x) + b`), so the search only has to find the right *shape*.
94
+
95
+ A generation consists of tournament selection (with a path-distance diversity check), uniform crossover over cube cells, point mutation, occasional MCTS refinement of the walk itself (UCT over path prefixes), and a periodic Levenberg–Marquardt polish of the constants on the active path. Fitness is normalized mean squared error, `NMSE = MSE / Var(y)`. The best distinct expressions form a hall of fame that feeds the ridge.
96
+
97
+ The search runs on a strided `sym_rows`-row subsample for `sym_generations` generations and is fully seeded by `random_state`.
98
+
99
+ ### Final solve
100
+
101
+ The full model is solved in primal form over up to `solve_rows` rows (auto-capped at `max(50000, 20 × n_features)`), accumulating the centered Gram matrix `G = ΦᵀΦ` in batches and applying a Cholesky solve with an LDLT fallback.
102
+
103
+ ## Reproducibility
104
+
105
+ With the default `sym_time_limit=0`, the symbolic search is generation-bounded and **fully deterministic**: the same `random_state`, data, and parameters produce a bit-identical model on every run, regardless of thread count or machine load. Setting `sym_time_limit > 0` switches to a wall-clock cap, which can stop at different generations on different runs and therefore trades reproducibility for a hard time budget.
106
+
107
+ ## API
108
+
109
+ ```python
110
+ BlackRubbyRegressor(
111
+ expansion_dim=1024, # Fourier cos/sin pairs (D)
112
+ alpha=0.0, # ridge strength; 0 = auto by LOO-CV
113
+ bandwidth=0.0, # Fourier bandwidth γ; 0 = auto by LOO-CV
114
+ random_state=42, # seed for projections and symbolic search
115
+ use_symbolic=True, # run the Rubby search
116
+ sym_population=128, # GA population size
117
+ sym_generations=100, # GA generations (when time limit is 0)
118
+ sym_rows=1024, # rows used by the symbolic search
119
+ sym_top_k=6, # symbolic columns offered to the ridge
120
+ sym_time_limit=0.0, # seconds; 0 = generation-bounded (reproducible)
121
+ select_rows=2048, # rows used for hyperparameter selection
122
+ select_dim=128, # Fourier pairs used during selection
123
+ batch_size=2048, # rows per block in feature assembly
124
+ solve_rows=-1, # rows in the final solve; -1 = auto cap, 0 = all
125
+ max_frequency=54.598, # largest 1D frequency (standardized units); 1D inputs only
126
+ )
127
+ ```
128
+
129
+ Methods: `fit(X, y)`, `predict(X)`, `score(X, y)` (R²), `get_params()`, `set_params(**params)`.
130
+
131
+ After fitting, the following attributes are available:
132
+
133
+ | Attribute | Meaning |
134
+ |---|---|
135
+ | `n_features_in_` | number of input columns seen during `fit` |
136
+ | `fit_seconds_` | total wall-clock fit time |
137
+ | `symbolic_seconds_` | time spent in the Rubby search |
138
+ | `chosen_bandwidth_` | selected Fourier bandwidth γ |
139
+ | `chosen_alpha_` | selected ridge strength α |
140
+ | `uses_symbolic_` | whether the LOO/holdout checks kept the symbolic columns |
141
+ | `symbolic_columns_` | number of symbolic columns in the final model |
142
+ | `champion_formula_` | best expression found, in infix (e.g. `0.9228*exp(x0*x1) - 0.0061`) |
143
+
144
+ ## Usage notes
145
+
146
+ - `X` must be a finite 1D or 2D numeric array; `y` must be one finite numeric target per row. Multi-output regression, categorical encoding, and missing-value imputation are not built in — encode and impute before calling `fit`.
147
+ - Fit on training data only, tune on validation data, and report on an untouched test set. The internal LOO-CV protects hyperparameter selection, but it is not a substitute for a held-out evaluation.
148
+ - For 1D inputs the Fourier projection is a deterministic log-spaced frequency grid up to `max_frequency`, which suits signal-like data; for `d ≥ 2` the projection is a seeded random Gaussian matrix.
149
+ - `score(X, y)` returns the coefficient of determination R² (1.0 is perfect, 0.0 is no better than predicting the mean).
150
+
151
+ ## Build from source
152
+
153
+ ```bash
154
+ git clone --recurse-submodules https://github.com/zeusnotjupiter/BlackRubby.git
155
+ cd BlackRubby
156
+ python -m pip install build
157
+ python -m build
158
+ ```
159
+
160
+ (If you cloned without `--recurse-submodules`, run `git submodule update --init` first — the Eigen headers under `vendor/eigen` are required.)
161
+
162
+ For an editable development build:
163
+
164
+ ```bash
165
+ python -m pip install scikit-build-core pybind11 cmake numpy
166
+ python -m pip install -e . --no-build-isolation
167
+ ```
168
+
169
+ Run the tests with `python -m pip install pytest` then `python -m pytest tests`.
170
+
171
+ ## License
172
+
173
+ Apache License 2.0 — see [LICENSE](LICENSE).
@@ -0,0 +1,149 @@
1
+ # BlackRubby Regressor
2
+
3
+ BlackRubby is a numeric regression estimator that fuses two complementary learners:
4
+
5
+ - **Rubby** — a symbolic search that evolves closed-form candidate expressions (e.g. `sqrt(x0^3 / (x1 + x2))`) on a 3×3×3 cube-walk genome.
6
+ - **Black** — a random-Fourier-feature ridge regression that fits a smooth kernel model over the inputs.
7
+
8
+ The final model is a single ridge over `[Fourier features | standardized inputs | symbolic columns]`, where the bandwidth, ridge strength, and whether to trust the symbolic columns are all chosen by exact leave-one-out cross-validation. It handles multiple numeric input features and one numeric target, with no Python-side dependencies beyond NumPy.
9
+
10
+ ```python
11
+ import numpy as np
12
+ from blackrubby import BlackRubbyRegressor
13
+
14
+ rng = np.random.default_rng(7)
15
+ X = rng.uniform(-1, 1, size=(512, 3))
16
+ y = np.sin(X[:, 0] * X[:, 1]) + 0.2 * X[:, 2]
17
+
18
+ model = BlackRubbyRegressor(expansion_dim=256, random_state=7)
19
+ model.fit(X[:400], y[:400])
20
+ print("held-out R2:", model.score(X[400:], y[400:]))
21
+ print("champion:", model.champion_formula_)
22
+ ```
23
+
24
+ ## Install
25
+
26
+ ```
27
+ pip install blackrubby
28
+ ```
29
+
30
+ Pre-built wheels are published for CPython 3.10–3.15 on Linux (x86_64), Windows (x64), and macOS (Intel and Apple Silicon). On a supported platform this installs in seconds with no compiler.
31
+
32
+ Building from source requires only a C++17 compiler and CMake. Eigen 3.4.0 is vendored under `vendor/eigen`, so **no network access is needed**; set `EIGEN3_INCLUDE_DIR` to use a different Eigen installation.
33
+
34
+ ## How it works
35
+
36
+ Given training pairs `(x_i, y_i)` with `x_i ∈ R^d`, BlackRubby fits a linear model in a lifted feature space:
37
+
38
+ ```
39
+ ŷ(x) = wᵀ Φ(x) + b
40
+ ```
41
+
42
+ The feature map `Φ(x)` has three blocks:
43
+
44
+ 1. **Random Fourier features.** `D` cos/sin pairs approximating a stationary kernel:
45
+ `Φ_fourier(x) = (1/√D) [cos(W x̂ / γ), sin(W x̂ / γ)]`, where `x̂` is the standardized input, `W ∈ R^{D×d}` has standard-normal entries, and `γ` is the bandwidth. This is the classic Rahimi–Recht approximation — as `D → ∞`, the inner product `Φ(x)ᵀΦ(x')` converges to the Gaussian kernel `k(x, x') = exp(-‖x̂ - x̂'‖² / 2γ²)`.
46
+
47
+ 2. **Standardized inputs.** The raw `(x - μ) / σ` block, which lets the model represent exactly-linear components without spending Fourier capacity on them.
48
+
49
+ 3. **Symbolic columns (Rubby).** Up to `sym_top_k` expressions found by the search, each standardized to zero mean and unit variance. These give the ridge a direct handle on non-smooth or strongly multiplicative structure (ratios, square roots, powers) that Fourier features approximate only slowly.
50
+
51
+ The ridge weights minimize the regularized squared error:
52
+
53
+ ```
54
+ w* = argmin_w Σ_i (y_i - wᵀΦ(x_i) - b)² + α ‖w‖²
55
+ ```
56
+
57
+ ### Hyperparameters by exact leave-one-out CV
58
+
59
+ `bandwidth γ`, ridge strength `α`, and the symbolic on/off decision are chosen on a `select_rows`-row subset using the **exact leave-one-out** formula for ridge regression. One eigendecomposition of the centered Gram matrix gives the LOO residual for every `α` in the grid simultaneously:
60
+
61
+ ```
62
+ e_i^LOO = (y_i - ŷ_i) / (1 - h_i), h = U diag(λ_j / (λ_j + nα)) Uᵀ
63
+ ```
64
+
65
+ so the model only leans on the symbolic columns when they demonstrably reduce out-of-sample error. A 2-fold holdout at full feature width re-checks the symbolic decision, because the reduced-width selection screen can mis-rank those columns.
66
+
67
+ ### The Rubby symbolic search
68
+
69
+ Candidate expressions are encoded as a walk on a 3×3×3 cube whose 27 cells each hold one operation or operand (`const`, `x_k`, `+`, `-`, `*`, `/`, `log`, `exp`, `sqrt`, `abs`, `x²`, `x³`). Starting from the corner cell, the genome's path (`sym_turns` moves, each ±x/±y/±z with wraparound) visits cells in order, and the visited nodes form a stack program evaluated column-wise over the data. Each candidate gets a least-squares scale and offset (`a·f(x) + b`), so the search only has to find the right *shape*.
70
+
71
+ A generation consists of tournament selection (with a path-distance diversity check), uniform crossover over cube cells, point mutation, occasional MCTS refinement of the walk itself (UCT over path prefixes), and a periodic Levenberg–Marquardt polish of the constants on the active path. Fitness is normalized mean squared error, `NMSE = MSE / Var(y)`. The best distinct expressions form a hall of fame that feeds the ridge.
72
+
73
+ The search runs on a strided `sym_rows`-row subsample for `sym_generations` generations and is fully seeded by `random_state`.
74
+
75
+ ### Final solve
76
+
77
+ The full model is solved in primal form over up to `solve_rows` rows (auto-capped at `max(50000, 20 × n_features)`), accumulating the centered Gram matrix `G = ΦᵀΦ` in batches and applying a Cholesky solve with an LDLT fallback.
78
+
79
+ ## Reproducibility
80
+
81
+ With the default `sym_time_limit=0`, the symbolic search is generation-bounded and **fully deterministic**: the same `random_state`, data, and parameters produce a bit-identical model on every run, regardless of thread count or machine load. Setting `sym_time_limit > 0` switches to a wall-clock cap, which can stop at different generations on different runs and therefore trades reproducibility for a hard time budget.
82
+
83
+ ## API
84
+
85
+ ```python
86
+ BlackRubbyRegressor(
87
+ expansion_dim=1024, # Fourier cos/sin pairs (D)
88
+ alpha=0.0, # ridge strength; 0 = auto by LOO-CV
89
+ bandwidth=0.0, # Fourier bandwidth γ; 0 = auto by LOO-CV
90
+ random_state=42, # seed for projections and symbolic search
91
+ use_symbolic=True, # run the Rubby search
92
+ sym_population=128, # GA population size
93
+ sym_generations=100, # GA generations (when time limit is 0)
94
+ sym_rows=1024, # rows used by the symbolic search
95
+ sym_top_k=6, # symbolic columns offered to the ridge
96
+ sym_time_limit=0.0, # seconds; 0 = generation-bounded (reproducible)
97
+ select_rows=2048, # rows used for hyperparameter selection
98
+ select_dim=128, # Fourier pairs used during selection
99
+ batch_size=2048, # rows per block in feature assembly
100
+ solve_rows=-1, # rows in the final solve; -1 = auto cap, 0 = all
101
+ max_frequency=54.598, # largest 1D frequency (standardized units); 1D inputs only
102
+ )
103
+ ```
104
+
105
+ Methods: `fit(X, y)`, `predict(X)`, `score(X, y)` (R²), `get_params()`, `set_params(**params)`.
106
+
107
+ After fitting, the following attributes are available:
108
+
109
+ | Attribute | Meaning |
110
+ |---|---|
111
+ | `n_features_in_` | number of input columns seen during `fit` |
112
+ | `fit_seconds_` | total wall-clock fit time |
113
+ | `symbolic_seconds_` | time spent in the Rubby search |
114
+ | `chosen_bandwidth_` | selected Fourier bandwidth γ |
115
+ | `chosen_alpha_` | selected ridge strength α |
116
+ | `uses_symbolic_` | whether the LOO/holdout checks kept the symbolic columns |
117
+ | `symbolic_columns_` | number of symbolic columns in the final model |
118
+ | `champion_formula_` | best expression found, in infix (e.g. `0.9228*exp(x0*x1) - 0.0061`) |
119
+
120
+ ## Usage notes
121
+
122
+ - `X` must be a finite 1D or 2D numeric array; `y` must be one finite numeric target per row. Multi-output regression, categorical encoding, and missing-value imputation are not built in — encode and impute before calling `fit`.
123
+ - Fit on training data only, tune on validation data, and report on an untouched test set. The internal LOO-CV protects hyperparameter selection, but it is not a substitute for a held-out evaluation.
124
+ - For 1D inputs the Fourier projection is a deterministic log-spaced frequency grid up to `max_frequency`, which suits signal-like data; for `d ≥ 2` the projection is a seeded random Gaussian matrix.
125
+ - `score(X, y)` returns the coefficient of determination R² (1.0 is perfect, 0.0 is no better than predicting the mean).
126
+
127
+ ## Build from source
128
+
129
+ ```bash
130
+ git clone --recurse-submodules https://github.com/zeusnotjupiter/BlackRubby.git
131
+ cd BlackRubby
132
+ python -m pip install build
133
+ python -m build
134
+ ```
135
+
136
+ (If you cloned without `--recurse-submodules`, run `git submodule update --init` first — the Eigen headers under `vendor/eigen` are required.)
137
+
138
+ For an editable development build:
139
+
140
+ ```bash
141
+ python -m pip install scikit-build-core pybind11 cmake numpy
142
+ python -m pip install -e . --no-build-isolation
143
+ ```
144
+
145
+ Run the tests with `python -m pip install pytest` then `python -m pytest tests`.
146
+
147
+ ## License
148
+
149
+ Apache License 2.0 — see [LICENSE](LICENSE).