bioversions 0.8.42__tar.gz → 0.8.44__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (81) hide show
  1. {bioversions-0.8.42 → bioversions-0.8.44}/PKG-INFO +1 -1
  2. {bioversions-0.8.42 → bioversions-0.8.44}/pyproject.toml +2 -2
  3. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/resources/versions.json +43 -2
  4. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/__init__.py +2 -0
  5. bioversions-0.8.44/src/bioversions/sources/spdx.py +27 -0
  6. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/version.py +1 -1
  7. {bioversions-0.8.42 → bioversions-0.8.44}/LICENSE +0 -0
  8. {bioversions-0.8.42 → bioversions-0.8.44}/README.md +0 -0
  9. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/__init__.py +0 -0
  10. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/__main__.py +0 -0
  11. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/charts.py +0 -0
  12. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/cli.py +0 -0
  13. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/py.typed +0 -0
  14. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/resources/__init__.py +0 -0
  15. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/resources/update.py +0 -0
  16. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/slack_client.py +0 -0
  17. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/antibodyregistry.py +0 -0
  18. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/bigg.py +0 -0
  19. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/biogrid.py +0 -0
  20. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/cellosaurus.py +0 -0
  21. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/chebi.py +0 -0
  22. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/chembl.py +0 -0
  23. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/chemidplus.py +0 -0
  24. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/civic.py +0 -0
  25. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/complexportal.py +0 -0
  26. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/daily.py +0 -0
  27. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/depmap.py +0 -0
  28. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/dgi.py +0 -0
  29. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/disgenet.py +0 -0
  30. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/drugbank.py +0 -0
  31. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/drugcentral.py +0 -0
  32. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/ensembl.py +0 -0
  33. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/expasy.py +0 -0
  34. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/flybase.py +0 -0
  35. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/gtdb.py +0 -0
  36. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/guidetopharmacology.py +0 -0
  37. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/hgnc.py +0 -0
  38. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/homologene.py +0 -0
  39. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/icd10.py +0 -0
  40. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/icd11.py +0 -0
  41. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/icf.py +0 -0
  42. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/intact.py +0 -0
  43. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/interpro.py +0 -0
  44. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/itis.py +0 -0
  45. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/kegg.py +0 -0
  46. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/mesh.py +0 -0
  47. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/mgi.py +0 -0
  48. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/mirbase.py +0 -0
  49. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/moalmanac.py +0 -0
  50. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/msigdb.py +0 -0
  51. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/ncit.py +0 -0
  52. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/npass.py +0 -0
  53. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/obo.py +0 -0
  54. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/ols.py +0 -0
  55. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/omim.py +0 -0
  56. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/oncotree.py +0 -0
  57. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/pathbank.py +0 -0
  58. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/pathwaycommons.py +0 -0
  59. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/pfam.py +0 -0
  60. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/pombase.py +0 -0
  61. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/pr.py +0 -0
  62. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/pubchem.py +0 -0
  63. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/reactome.py +0 -0
  64. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/rfam.py +0 -0
  65. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/rgd.py +0 -0
  66. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/rhea.py +0 -0
  67. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/rxnorm.py +0 -0
  68. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/sgd.py +0 -0
  69. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/signor.py +0 -0
  70. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/silva.py +0 -0
  71. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/slm.py +0 -0
  72. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/stringdb.py +0 -0
  73. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/umls.py +0 -0
  74. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/uniprot.py +0 -0
  75. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/unversioned.py +0 -0
  76. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/wikipathways.py +0 -0
  77. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/sources/zfin.py +0 -0
  78. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/templates/base.html +0 -0
  79. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/templates/home.html +0 -0
  80. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/utils.py +0 -0
  81. {bioversions-0.8.42 → bioversions-0.8.44}/src/bioversions/wsgi.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: bioversions
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- Version: 0.8.42
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+ Version: 0.8.44
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  Summary: Get the current version for biological databases
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  Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases
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  Author: Charles Tapley Hoyt
@@ -4,7 +4,7 @@ build-backend = "uv_build"
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  [project]
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  name = "bioversions"
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- version = "0.8.42"
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+ version = "0.8.44"
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  description = "Get the current version for biological databases"
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  readme = "README.md"
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  authors = [
@@ -260,7 +260,7 @@ known-first-party = [
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  docstring-code-format = true
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  [tool.bumpversion]
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- current_version = "0.8.42"
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+ current_version = "0.8.44"
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  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
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  serialize = [
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  "{major}.{minor}.{patch}-{release}+{build}",
@@ -1,7 +1,7 @@
1
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  {
2
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  "annotations": {
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- "revision": 1032,
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- "date": "2025-06-16",
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+ "revision": 1034,
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+ "date": "2025-06-18",
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  "author": "runner"
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  },
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  "database": [
@@ -678,6 +678,16 @@
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  "retrieved": "2025-06-14",
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  "version": "2025-06-13",
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  "homepage": "https://antibodyregistry.org/"
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+ },
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+ {
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+ "retrieved": "2025-06-17",
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+ "version": "2025-06-16",
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+ "homepage": "https://antibodyregistry.org/"
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+ },
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+ {
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+ "retrieved": "2025-06-18",
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+ "version": "2025-06-17",
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+ "homepage": "https://antibodyregistry.org/"
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  }
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  ],
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  "name": "Antibody Registry",
@@ -10975,6 +10985,10 @@
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  {
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  "retrieved": "2025-06-15",
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  "version": "2025-06-13"
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+ },
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+ {
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+ "retrieved": "2025-06-18",
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+ "version": "2025-06-16"
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  }
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  ],
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  "name": "Online Mendelian Inheritance in Man",
@@ -13752,6 +13766,10 @@
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  {
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  "retrieved": "2025-06-10",
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  "version": "2025-06-06"
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+ },
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+ {
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+ "retrieved": "2025-06-17",
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+ "version": "2025-06-13"
13755
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  }
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  ],
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  "name": "Rat Genome Database",
@@ -14717,6 +14735,17 @@
14717
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  "prefix": "swo",
14718
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  "vtype": "semver"
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  },
14738
+ {
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+ "releases": [
14740
+ {
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+ "retrieved": "2025-06-18",
14742
+ "version": "6a76493"
14743
+ }
14744
+ ],
14745
+ "name": "Software Package Data Exchange License",
14746
+ "prefix": "spdx",
14747
+ "vtype": "other"
14748
+ },
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  {
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  "name": "Sorghum ontology",
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  "prefix": "co_324",
@@ -17740,6 +17769,14 @@
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  {
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  "retrieved": "2025-06-16",
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  "version": "2025-06-16"
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+ },
17773
+ {
17774
+ "retrieved": "2025-06-17",
17775
+ "version": "2025-06-17"
17776
+ },
17777
+ {
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+ "retrieved": "2025-06-18",
17779
+ "version": "2025-06-18"
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  }
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  ],
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  "name": "SwissLipids",
@@ -23472,6 +23509,10 @@
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  {
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  "retrieved": "2025-06-16",
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  "version": "2025-06-14"
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+ },
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+ {
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+ "retrieved": "2025-06-18",
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+ "version": "2025-06-16"
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  }
23476
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  ],
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  "name": "Zebrafish Information Network",
@@ -66,6 +66,7 @@ from .sgd import SgdGetter
66
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  from .signor import SignorGetter
67
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  from .silva import SILVAGetter
68
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  from .slm import SwissLipidGetter
69
+ from .spdx import SPDXGetter
69
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  from .stringdb import StringDBGetter
70
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  from .umls import UMLSGetter
71
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  from .uniprot import UniProtGetter
@@ -150,6 +151,7 @@ def get_getters() -> list[type[Getter]]:
150
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  GTDBGetter,
151
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  SILVAGetter,
152
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  SignorGetter,
154
+ SPDXGetter,
153
155
  ]
154
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  getters.extend(iter_obo_getters())
155
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  extend_ols_getters(getters)
@@ -0,0 +1,27 @@
1
+ """A getter for SPDX."""
2
+
3
+ import requests
4
+
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+ from bioversions.utils import Getter, VersionType
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+
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+ __all__ = [
8
+ "SPDXGetter",
9
+ ]
10
+
11
+ DATA_URL = "https://github.com/spdx/license-list-data/raw/refs/heads/main/json/licenses.json"
12
+
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+
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+ class SPDXGetter(Getter):
15
+ """A getter for SPDX."""
16
+
17
+ bioregistry_id = "spdx"
18
+ name = "Software Package Data Exchange License"
19
+ version_type = VersionType.other
20
+
21
+ def get(self) -> str:
22
+ """Get the latest SwissLipids version number."""
23
+ return requests.get(DATA_URL, timeout=5).json()["licenseListVersion"]
24
+
25
+
26
+ if __name__ == "__main__":
27
+ SPDXGetter.print()
@@ -8,7 +8,7 @@ __all__ = [
8
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  "get_git_hash",
9
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  ]
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11
- VERSION = "0.8.42"
11
+ VERSION = "0.8.44"
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  def get_git_hash() -> str:
File without changes
File without changes