bioversions 0.8.242__tar.gz → 0.8.254__tar.gz

{bioversions-0.8.242 → bioversions-0.8.254}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bioversions
-Version: 0.8.242
+Version: 0.8.254
 Summary: Get the current version for biological databases
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases
 Author: Charles Tapley Hoyt
@@ -39,6 +39,7 @@ Requires-Dist: pydantic>=2.0
 Requires-Dist: psycopg2-binary
 Requires-Dist: python-dateutil
 Requires-Dist: class-resolver>=0.7.1
+Requires-Dist: ror-downloader>=0.0.4
 Requires-Dist: matplotlib ; extra == 'charts'
 Requires-Dist: seaborn ; extra == 'charts'
 Requires-Dist: slack-sdk ; extra == 'slack'

{bioversions-0.8.242 → bioversions-0.8.254}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "uv_build"
 
 [project]
 name = "bioversions"
-version = "0.8.242"
+version = "0.8.254"
 description = "Get the current version for biological databases"
 readme = "README.md"
 authors = [
@@ -67,6 +67,7 @@ dependencies = [
     "psycopg2-binary",
     "python-dateutil",
     "class-resolver>=0.7.1",
+    "ror-downloader>=0.0.4",
 ]
 
 # see https://peps.python.org/pep-0735/ and https://docs.astral.sh/uv/concepts/dependencies/#dependency-groups
@@ -262,7 +263,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.8.242"
+current_version = "0.8.254"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioversions-0.8.242 → bioversions-0.8.254}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 1228,
-    "date": "2026-01-23",
+    "revision": 1239,
+    "date": "2026-02-03",
     "author": "runner"
   },
   "database": [
@@ -1443,6 +1443,46 @@
           "retrieved": "2026-01-23",
           "version": "2026-01-22",
           "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-23",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-26",
+          "version": "2026-01-25",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-26",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-27",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-28",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-30",
+          "version": "2026-01-29",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-31",
+          "version": "2026-01-30",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-02-03",
+          "version": "2026-02-02",
+          "homepage": "https://antibodyregistry.org/"
         }
       ],
       "name": "Antibody Registry",
@@ -2056,6 +2096,11 @@
           "retrieved": "2026-01-02",
           "version": "5.0.253",
           "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-5.0.253"
+        },
+        {
+          "retrieved": "2026-02-03",
+          "version": "5.0.254",
+          "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-5.0.254"
         }
       ],
       "vtype": "semver"
@@ -3406,6 +3451,10 @@
         {
           "retrieved": "2026-01-02",
           "version": "2026-01-01"
+        },
+        {
+          "retrieved": "2026-02-02",
+          "version": "2026-02-01"
         }
       ],
       "name": "CiVIC",
@@ -4771,6 +4820,12 @@
           "version": "2025-12-23",
           "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2025-12-23",
           "date": "2025-12-23"
+        },
+        {
+          "retrieved": "2026-02-03",
+          "version": "2026-02-02",
+          "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2026-02-02",
+          "date": "2026-02-02"
         }
       ],
       "vtype": "date"
@@ -5892,6 +5947,10 @@
         {
           "retrieved": "2025-10-16",
           "version": "2025-10-15"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-28"
         }
       ],
       "vtype": "date"
@@ -7408,6 +7467,12 @@
           "version": "2025-10-10",
           "homepage": "http://archive.geneontology.org/full/2025-10-10/",
           "date": "2025-10-10"
+        },
+        {
+          "retrieved": "2026-01-31",
+          "version": "2026-01-23",
+          "homepage": "http://archive.geneontology.org/full/2026-01-23/",
+          "date": "2026-01-23"
         }
       ],
       "vtype": "date"
@@ -8869,6 +8934,12 @@
           "version": "107.0",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/107.0/",
           "date": "2025-10-16"
+        },
+        {
+          "retrieved": "2026-01-30",
+          "version": "108.0",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/108.0/",
+          "date": "2026-01-29"
         }
       ],
       "vtype": "semver_minor"
@@ -9042,6 +9113,10 @@
         {
           "retrieved": "2025-12-31",
           "version": "2025-12-23"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-22"
         }
       ],
       "name": "ITIS",
@@ -10918,6 +10993,11 @@
           "retrieved": "2025-06-09",
           "version": "2025.1",
           "homepage": "https://data.broadinstitute.org/gsea-msigdb/msigdb/release/2025.1"
+        },
+        {
+          "retrieved": "2026-02-01",
+          "version": "2026.1",
+          "homepage": "https://data.broadinstitute.org/gsea-msigdb/msigdb/release/2026.1"
         }
       ],
       "vtype": "year_minor"
@@ -11227,6 +11307,11 @@
           "retrieved": "2026-01-14",
           "version": "25.10d",
           "date": "2025-10-27"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "26.01d",
+          "date": "2026-01-26"
         }
       ],
       "name": "National Cancer Institute Thesaurus",
@@ -13392,6 +13477,34 @@
         {
           "retrieved": "2026-01-23",
           "version": "2026-01-21"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-22"
+        },
+        {
+          "retrieved": "2026-01-25",
+          "version": "2026-01-23"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-26"
+        },
+        {
+          "retrieved": "2026-01-30",
+          "version": "2026-01-28"
+        },
+        {
+          "retrieved": "2026-01-31",
+          "version": "2026-01-29"
+        },
+        {
+          "retrieved": "2026-02-01",
+          "version": "2026-01-30"
+        },
+        {
+          "retrieved": "2026-02-02",
+          "version": "2026-01-31"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -15993,6 +16106,11 @@
           "retrieved": "2026-01-01",
           "version": "2026-01-01",
           "homepage": "https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2026-01-01"
+        },
+        {
+          "retrieved": "2026-02-01",
+          "version": "2026-02-01",
+          "homepage": "https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2026-02-01"
         }
       ],
       "name": "PubChem",
@@ -16530,6 +16648,14 @@
         {
           "retrieved": "2026-01-20",
           "version": "2026-01-17"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-24"
+        },
+        {
+          "retrieved": "2026-02-03",
+          "version": "2026-01-31"
         }
       ],
       "name": "Rat Genome Database",
@@ -17091,6 +17217,11 @@
           "retrieved": "2025-06-19",
           "version": "139",
           "date": "2025-06-18"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "140",
+          "date": "2026-01-21"
         }
       ],
       "vtype": "date"
@@ -17357,6 +17488,11 @@
           "retrieved": "2026-01-06",
           "version": "2026-01-05",
           "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_01052026.zip"
+        },
+        {
+          "retrieved": "2026-02-03",
+          "version": "2026-02-02",
+          "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_02022026.zip"
         }
       ],
       "name": "RxNorm",
@@ -17723,6 +17859,14 @@
         {
           "retrieved": "2026-01-23",
           "version": "d34325e"
+        },
+        {
+          "retrieved": "2026-01-30",
+          "version": "6dae64a"
+        },
+        {
+          "retrieved": "2026-01-31",
+          "version": "297da51"
         }
       ],
       "name": "Software Package Data Exchange License",
@@ -21547,6 +21691,50 @@
         {
           "retrieved": "2026-01-23",
           "version": "2026-01-23"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-24"
+        },
+        {
+          "retrieved": "2026-01-25",
+          "version": "2026-01-25"
+        },
+        {
+          "retrieved": "2026-01-26",
+          "version": "2026-01-26"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-27"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-28"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-29"
+        },
+        {
+          "retrieved": "2026-01-30",
+          "version": "2026-01-30"
+        },
+        {
+          "retrieved": "2026-01-31",
+          "version": "2026-01-31"
+        },
+        {
+          "retrieved": "2026-02-01",
+          "version": "2026-02-01"
+        },
+        {
+          "retrieved": "2026-02-02",
+          "version": "2026-02-02"
+        },
+        {
+          "retrieved": "2026-02-03",
+          "version": "2026-02-03"
         }
       ],
       "name": "SwissLipids",
@@ -22624,6 +22812,12 @@
           "version": "2025_04",
           "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2025_04/",
           "date": "2025-04-01"
+        },
+        {
+          "retrieved": "2026-01-30",
+          "version": "2026_01",
+          "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2026_01/",
+          "date": "2026-01-01"
         }
       ],
       "vtype": "month"
@@ -28224,6 +28418,50 @@
         {
           "retrieved": "2026-01-23",
           "version": "2026-01-21"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-22"
+        },
+        {
+          "retrieved": "2026-01-25",
+          "version": "2026-01-23"
+        },
+        {
+          "retrieved": "2026-01-26",
+          "version": "2026-01-24"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-25"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-26"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-27"
+        },
+        {
+          "retrieved": "2026-01-30",
+          "version": "2026-01-28"
+        },
+        {
+          "retrieved": "2026-01-31",
+          "version": "2026-01-29"
+        },
+        {
+          "retrieved": "2026-02-01",
+          "version": "2026-01-30"
+        },
+        {
+          "retrieved": "2026-02-02",
+          "version": "2026-01-31"
+        },
+        {
+          "retrieved": "2026-02-03",
+          "version": "2026-02-01"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.8.242 → bioversions-0.8.254}/src/bioversions/sources/__init__.py

@@ -64,6 +64,7 @@ from .reactome import ReactomeGetter
 from .rfam import RfamGetter
 from .rgd import RGDGetter
 from .rhea import RheaGetter
+from .ror import RORGetter
 from .rxnorm import RxNormGetter
 from .sgd import SgdGetter
 from .signor import SignorGetter
@@ -134,6 +135,7 @@ __all__ = [
     "PombaseGetter",
     "PubChemGetter",
     "RGDGetter",
+    "RORGetter",
     "ReactomeGetter",
     "RfamGetter",
     "RheaGetter",

bioversions-0.8.254/src/bioversions/sources/ror.py

@@ -0,0 +1,27 @@
+"""A getter for ROR."""
+
+from bioversions.utils import Getter, VersionType
+
+__all__ = [
+    "RORGetter",
+]
+
+
+class RORGetter(Getter):
+    """A getter for ROR."""
+
+    bioregistry_id = "ror"
+    name = "Research Organization Registry"
+    date_fmt = "%Y-%m-%d"
+    version_type = VersionType.date
+
+    def get(self) -> dict[str, str]:
+        """Get the latest ROR version."""
+        import ror_downloader
+
+        version_info = ror_downloader.get_version_info(download=False)
+        return {"version": version_info.version, "date": version_info.date.isoformat()}
+
+
+if __name__ == "__main__":
+    RORGetter.print()

{bioversions-0.8.242 → bioversions-0.8.254}/src/bioversions/version.py

@@ -11,7 +11,7 @@ __all__ = [
     "get_version",
 ]
 
-VERSION = "0.8.242"
+VERSION = "0.8.254"
 
 
 def get_git_hash() -> str | None: