bioversions 0.8.242__tar.gz → 0.8.249__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (84) hide show
  1. {bioversions-0.8.242 → bioversions-0.8.249}/PKG-INFO +2 -1
  2. {bioversions-0.8.242 → bioversions-0.8.249}/pyproject.toml +3 -2
  3. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/resources/versions.json +109 -2
  4. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/__init__.py +2 -0
  5. bioversions-0.8.249/src/bioversions/sources/ror.py +27 -0
  6. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/version.py +1 -1
  7. {bioversions-0.8.242 → bioversions-0.8.249}/LICENSE +0 -0
  8. {bioversions-0.8.242 → bioversions-0.8.249}/README.md +0 -0
  9. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/__init__.py +0 -0
  10. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/__main__.py +0 -0
  11. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/charts.py +0 -0
  12. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/cli.py +0 -0
  13. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/py.typed +0 -0
  14. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/resources/__init__.py +0 -0
  15. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/resources/update.py +0 -0
  16. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/slack_client.py +0 -0
  17. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/antibodyregistry.py +0 -0
  18. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/bigg.py +0 -0
  19. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/biogrid.py +0 -0
  20. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/ccle.py +0 -0
  21. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/cellosaurus.py +0 -0
  22. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/chebi.py +0 -0
  23. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/chembl.py +0 -0
  24. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/chemidplus.py +0 -0
  25. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/civic.py +0 -0
  26. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/complexportal.py +0 -0
  27. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/daily.py +0 -0
  28. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/depmap.py +0 -0
  29. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/dgi.py +0 -0
  30. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/disgenet.py +0 -0
  31. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/drugbank.py +0 -0
  32. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/drugcentral.py +0 -0
  33. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/ensembl.py +0 -0
  34. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/expasy.py +0 -0
  35. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/flybase.py +0 -0
  36. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/gtdb.py +0 -0
  37. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/guidetopharmacology.py +0 -0
  38. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/hgnc.py +0 -0
  39. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/homologene.py +0 -0
  40. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/icd10.py +0 -0
  41. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/icd11.py +0 -0
  42. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/icf.py +0 -0
  43. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/intact.py +0 -0
  44. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/interpro.py +0 -0
  45. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/itis.py +0 -0
  46. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/kegg.py +0 -0
  47. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/loinc.py +0 -0
  48. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/mesh.py +0 -0
  49. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/mgi.py +0 -0
  50. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/mirbase.py +0 -0
  51. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/moalmanac.py +0 -0
  52. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/msigdb.py +0 -0
  53. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/ncit.py +0 -0
  54. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/npass.py +0 -0
  55. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/obo.py +0 -0
  56. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/ols.py +0 -0
  57. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/omim.py +0 -0
  58. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/oncotree.py +0 -0
  59. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/pathbank.py +0 -0
  60. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/pathwaycommons.py +0 -0
  61. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/pfam.py +0 -0
  62. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/pombase.py +0 -0
  63. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/pr.py +0 -0
  64. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/pubchem.py +0 -0
  65. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/reactome.py +0 -0
  66. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/rfam.py +0 -0
  67. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/rgd.py +0 -0
  68. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/rhea.py +0 -0
  69. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/rxnorm.py +0 -0
  70. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/sgd.py +0 -0
  71. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/signor.py +0 -0
  72. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/silva.py +0 -0
  73. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/slm.py +0 -0
  74. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/spdx.py +0 -0
  75. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/stringdb.py +0 -0
  76. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/umls.py +0 -0
  77. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/uniprot.py +0 -0
  78. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/unversioned.py +0 -0
  79. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/wikipathways.py +0 -0
  80. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/sources/zfin.py +0 -0
  81. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/templates/base.html +0 -0
  82. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/templates/home.html +0 -0
  83. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/utils.py +0 -0
  84. {bioversions-0.8.242 → bioversions-0.8.249}/src/bioversions/wsgi.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: bioversions
3
- Version: 0.8.242
3
+ Version: 0.8.249
4
4
  Summary: Get the current version for biological databases
5
5
  Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases
6
6
  Author: Charles Tapley Hoyt
@@ -39,6 +39,7 @@ Requires-Dist: pydantic>=2.0
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  Requires-Dist: psycopg2-binary
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  Requires-Dist: python-dateutil
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  Requires-Dist: class-resolver>=0.7.1
42
+ Requires-Dist: ror-downloader>=0.0.4
42
43
  Requires-Dist: matplotlib ; extra == 'charts'
43
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  Requires-Dist: seaborn ; extra == 'charts'
44
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  Requires-Dist: slack-sdk ; extra == 'slack'
@@ -4,7 +4,7 @@ build-backend = "uv_build"
4
4
 
5
5
  [project]
6
6
  name = "bioversions"
7
- version = "0.8.242"
7
+ version = "0.8.249"
8
8
  description = "Get the current version for biological databases"
9
9
  readme = "README.md"
10
10
  authors = [
@@ -67,6 +67,7 @@ dependencies = [
67
67
  "psycopg2-binary",
68
68
  "python-dateutil",
69
69
  "class-resolver>=0.7.1",
70
+ "ror-downloader>=0.0.4",
70
71
  ]
71
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72
73
  # see https://peps.python.org/pep-0735/ and https://docs.astral.sh/uv/concepts/dependencies/#dependency-groups
@@ -262,7 +263,7 @@ known-first-party = [
262
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  docstring-code-format = true
263
264
 
264
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  [tool.bumpversion]
265
- current_version = "0.8.242"
266
+ current_version = "0.8.249"
266
267
  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
267
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  serialize = [
268
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  "{major}.{minor}.{patch}-{release}+{build}",
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 1228,
4
- "date": "2026-01-23",
3
+ "revision": 1234,
4
+ "date": "2026-01-29",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -1443,6 +1443,31 @@
1443
1443
  "retrieved": "2026-01-23",
1444
1444
  "version": "2026-01-22",
1445
1445
  "homepage": "https://antibodyregistry.org/"
1446
+ },
1447
+ {
1448
+ "retrieved": "2026-01-24",
1449
+ "version": "2026-01-23",
1450
+ "homepage": "https://antibodyregistry.org/"
1451
+ },
1452
+ {
1453
+ "retrieved": "2026-01-26",
1454
+ "version": "2026-01-25",
1455
+ "homepage": "https://antibodyregistry.org/"
1456
+ },
1457
+ {
1458
+ "retrieved": "2026-01-27",
1459
+ "version": "2026-01-26",
1460
+ "homepage": "https://antibodyregistry.org/"
1461
+ },
1462
+ {
1463
+ "retrieved": "2026-01-28",
1464
+ "version": "2026-01-27",
1465
+ "homepage": "https://antibodyregistry.org/"
1466
+ },
1467
+ {
1468
+ "retrieved": "2026-01-29",
1469
+ "version": "2026-01-28",
1470
+ "homepage": "https://antibodyregistry.org/"
1446
1471
  }
1447
1472
  ],
1448
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  "name": "Antibody Registry",
@@ -5892,6 +5917,10 @@
5892
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  {
5893
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  "retrieved": "2025-10-16",
5894
5919
  "version": "2025-10-15"
5920
+ },
5921
+ {
5922
+ "retrieved": "2026-01-29",
5923
+ "version": "2026-01-28"
5895
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  }
5896
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  ],
5897
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  "vtype": "date"
@@ -9042,6 +9071,10 @@
9042
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  {
9043
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  "retrieved": "2025-12-31",
9044
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  "version": "2025-12-23"
9074
+ },
9075
+ {
9076
+ "retrieved": "2026-01-27",
9077
+ "version": "2026-01-22"
9045
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  }
9046
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  ],
9047
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  "name": "ITIS",
@@ -11227,6 +11260,11 @@
11227
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  "retrieved": "2026-01-14",
11228
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  "version": "25.10d",
11229
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  "date": "2025-10-27"
11263
+ },
11264
+ {
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+ "retrieved": "2026-01-29",
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+ "version": "26.01d",
11267
+ "date": "2026-01-26"
11230
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  }
11231
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  ],
11232
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  "name": "National Cancer Institute Thesaurus",
@@ -13392,6 +13430,18 @@
13392
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  {
13393
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  "retrieved": "2026-01-23",
13394
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  "version": "2026-01-21"
13433
+ },
13434
+ {
13435
+ "retrieved": "2026-01-24",
13436
+ "version": "2026-01-22"
13437
+ },
13438
+ {
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+ "retrieved": "2026-01-25",
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+ "version": "2026-01-23"
13441
+ },
13442
+ {
13443
+ "retrieved": "2026-01-28",
13444
+ "version": "2026-01-26"
13395
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  }
13396
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  ],
13397
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  "name": "Online Mendelian Inheritance in Man",
@@ -16530,6 +16580,10 @@
16530
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  {
16531
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  "retrieved": "2026-01-20",
16532
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  "version": "2026-01-17"
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+ },
16584
+ {
16585
+ "retrieved": "2026-01-27",
16586
+ "version": "2026-01-24"
16533
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  }
16534
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  ],
16535
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  "name": "Rat Genome Database",
@@ -17091,6 +17145,11 @@
17091
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  "retrieved": "2025-06-19",
17092
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  "version": "139",
17093
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  "date": "2025-06-18"
17148
+ },
17149
+ {
17150
+ "retrieved": "2026-01-29",
17151
+ "version": "140",
17152
+ "date": "2026-01-21"
17094
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  }
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  ],
17096
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  "vtype": "date"
@@ -21547,6 +21606,30 @@
21547
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  {
21548
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  "retrieved": "2026-01-23",
21549
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  "version": "2026-01-23"
21609
+ },
21610
+ {
21611
+ "retrieved": "2026-01-24",
21612
+ "version": "2026-01-24"
21613
+ },
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+ {
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+ "retrieved": "2026-01-25",
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+ "version": "2026-01-25"
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+ },
21618
+ {
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+ "retrieved": "2026-01-26",
21620
+ "version": "2026-01-26"
21621
+ },
21622
+ {
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+ "retrieved": "2026-01-27",
21624
+ "version": "2026-01-27"
21625
+ },
21626
+ {
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+ "retrieved": "2026-01-28",
21628
+ "version": "2026-01-28"
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+ },
21630
+ {
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+ "retrieved": "2026-01-29",
21632
+ "version": "2026-01-29"
21550
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  }
21551
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  ],
21552
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  "name": "SwissLipids",
@@ -28224,6 +28307,30 @@
28224
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  {
28225
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  "retrieved": "2026-01-23",
28226
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  "version": "2026-01-21"
28310
+ },
28311
+ {
28312
+ "retrieved": "2026-01-24",
28313
+ "version": "2026-01-22"
28314
+ },
28315
+ {
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+ "retrieved": "2026-01-25",
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+ "version": "2026-01-23"
28318
+ },
28319
+ {
28320
+ "retrieved": "2026-01-26",
28321
+ "version": "2026-01-24"
28322
+ },
28323
+ {
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+ "retrieved": "2026-01-27",
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+ "version": "2026-01-25"
28326
+ },
28327
+ {
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+ "retrieved": "2026-01-28",
28329
+ "version": "2026-01-26"
28330
+ },
28331
+ {
28332
+ "retrieved": "2026-01-29",
28333
+ "version": "2026-01-27"
28227
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  }
28228
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  ],
28229
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  "name": "Zebrafish Information Network",
@@ -64,6 +64,7 @@ from .reactome import ReactomeGetter
64
64
  from .rfam import RfamGetter
65
65
  from .rgd import RGDGetter
66
66
  from .rhea import RheaGetter
67
+ from .ror import RORGetter
67
68
  from .rxnorm import RxNormGetter
68
69
  from .sgd import SgdGetter
69
70
  from .signor import SignorGetter
@@ -134,6 +135,7 @@ __all__ = [
134
135
  "PombaseGetter",
135
136
  "PubChemGetter",
136
137
  "RGDGetter",
138
+ "RORGetter",
137
139
  "ReactomeGetter",
138
140
  "RfamGetter",
139
141
  "RheaGetter",
@@ -0,0 +1,27 @@
1
+ """A getter for ROR."""
2
+
3
+ from bioversions.utils import Getter, VersionType
4
+
5
+ __all__ = [
6
+ "RORGetter",
7
+ ]
8
+
9
+
10
+ class RORGetter(Getter):
11
+ """A getter for ROR."""
12
+
13
+ bioregistry_id = "ror"
14
+ name = "Research Organization Registry"
15
+ date_fmt = "%Y-%m-%d"
16
+ version_type = VersionType.date
17
+
18
+ def get(self) -> dict[str, str]:
19
+ """Get the latest ROR version."""
20
+ import ror_downloader
21
+
22
+ version_info = ror_downloader.get_version_info(download=False)
23
+ return {"version": version_info.version, "date": version_info.date.isoformat()}
24
+
25
+
26
+ if __name__ == "__main__":
27
+ RORGetter.print()
@@ -11,7 +11,7 @@ __all__ = [
11
11
  "get_version",
12
12
  ]
13
13
 
14
- VERSION = "0.8.242"
14
+ VERSION = "0.8.249"
15
15
 
16
16
 
17
17
  def get_git_hash() -> str | None:
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