bioversions 0.8.233__tar.gz → 0.8.249__tar.gz

{bioversions-0.8.233 → bioversions-0.8.249}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bioversions
-Version: 0.8.233
+Version: 0.8.249
 Summary: Get the current version for biological databases
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases
 Author: Charles Tapley Hoyt
@@ -39,6 +39,7 @@ Requires-Dist: pydantic>=2.0
 Requires-Dist: psycopg2-binary
 Requires-Dist: python-dateutil
 Requires-Dist: class-resolver>=0.7.1
+Requires-Dist: ror-downloader>=0.0.4
 Requires-Dist: matplotlib ; extra == 'charts'
 Requires-Dist: seaborn ; extra == 'charts'
 Requires-Dist: slack-sdk ; extra == 'slack'
@@ -49,10 +50,10 @@ Maintainer: Charles Tapley Hoyt
 Maintainer-email: Charles Tapley Hoyt <cthoyt@gmail.com>
 Requires-Python: >=3.10
 Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
-Project-URL: Documentation, https://bioversions.readthedocs.io
-Project-URL: Funding, https://github.com/sponsors/cthoyt
 Project-URL: Homepage, https://github.com/biopragmatics/bioversions
 Project-URL: Repository, https://github.com/biopragmatics/bioversions.git
+Project-URL: Documentation, https://bioversions.readthedocs.io
+Project-URL: Funding, https://github.com/sponsors/cthoyt
 Provides-Extra: charts
 Provides-Extra: slack
 Provides-Extra: twitter

{bioversions-0.8.233 → bioversions-0.8.249}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "uv_build"
 
 [project]
 name = "bioversions"
-version = "0.8.233"
+version = "0.8.249"
 description = "Get the current version for biological databases"
 readme = "README.md"
 authors = [
@@ -67,6 +67,7 @@ dependencies = [
     "psycopg2-binary",
     "python-dateutil",
     "class-resolver>=0.7.1",
+    "ror-downloader>=0.0.4",
 ]
 
 # see https://peps.python.org/pep-0735/ and https://docs.astral.sh/uv/concepts/dependencies/#dependency-groups
@@ -262,7 +263,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.8.233"
+current_version = "0.8.249"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioversions-0.8.233 → bioversions-0.8.249}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 1219,
-    "date": "2026-01-14",
+    "revision": 1234,
+    "date": "2026-01-29",
     "author": "runner"
   },
   "database": [
@@ -204,6 +204,10 @@
         {
           "retrieved": "2021-02-02",
           "version": "2014-12-05"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2022-09-13"
         }
       ],
       "vtype": "date"
@@ -1404,6 +1408,66 @@
           "retrieved": "2026-01-14",
           "version": "2026-01-13",
           "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-15",
+          "version": "2026-01-14",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-16",
+          "version": "2026-01-15",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-17",
+          "version": "2026-01-16",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-20",
+          "version": "2026-01-19",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-21",
+          "version": "2026-01-20",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-22",
+          "version": "2026-01-21",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-23",
+          "version": "2026-01-22",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-23",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-26",
+          "version": "2026-01-25",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-26",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-27",
+          "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-28",
+          "homepage": "https://antibodyregistry.org/"
         }
       ],
       "name": "Antibody Registry",
@@ -1555,6 +1619,10 @@
         {
           "retrieved": "2025-12-28",
           "version": "2025-12-19"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-12"
         }
       ],
       "vtype": "date"
@@ -3578,6 +3646,10 @@
         {
           "retrieved": "2025-12-14",
           "version": "2.260"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2.261"
         }
       ],
       "vtype": "date"
@@ -3833,6 +3905,12 @@
           "version": "2025-08-08",
           "homepage": "https://ftp.ebi.ac.uk/pub/databases/intact/complex/2025-08-08/",
           "date": "2025-08-08"
+        },
+        {
+          "retrieved": "2026-01-15",
+          "version": "2026-01-09",
+          "homepage": "https://ftp.ebi.ac.uk/pub/databases/intact/complex/2026-01-09/",
+          "date": "2026-01-09"
         }
       ],
       "vtype": "date"
@@ -4849,6 +4927,10 @@
         {
           "retrieved": "2025-10-20",
           "version": "2025-10-16"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-13"
         }
       ],
       "name": "Drosophila development",
@@ -4952,6 +5034,10 @@
         {
           "retrieved": "2025-10-20",
           "version": "2025-10-16"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-13"
         }
       ],
       "name": "Drosophila gross anatomy",
@@ -5071,6 +5157,10 @@
         {
           "retrieved": "2025-10-20",
           "version": "2025-10-17"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-13"
         }
       ],
       "name": "Drosophila Phenotype Ontology",
@@ -5617,6 +5707,10 @@
         {
           "retrieved": "2025-07-22",
           "version": "2025-06-23"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-09"
         }
       ],
       "name": "Evidence and Conclusion Ontology",
@@ -5823,6 +5917,10 @@
         {
           "retrieved": "2025-10-16",
           "version": "2025-10-15"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-28"
         }
       ],
       "vtype": "date"
@@ -6062,6 +6160,10 @@
         {
           "retrieved": "2026-01-11",
           "version": "4.222"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "4.223"
         }
       ],
       "vtype": "date"
@@ -6923,6 +7025,10 @@
         {
           "retrieved": "2025-10-20",
           "version": "2025-10-17"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-13"
         }
       ],
       "name": "FlyBase Controlled Vocabulary",
@@ -8282,6 +8388,10 @@
         {
           "retrieved": "2025-12-07",
           "version": "2025-11-24"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-08"
         }
       ],
       "vtype": "date"
@@ -8547,6 +8657,12 @@
           "version": "2025-08-08",
           "homepage": "https://ftp.ebi.ac.uk/pub/databases/intact/2025-08-08/",
           "date": "2025-08-08"
+        },
+        {
+          "retrieved": "2026-01-15",
+          "version": "2026-01-09",
+          "homepage": "https://ftp.ebi.ac.uk/pub/databases/intact/2026-01-09/",
+          "date": "2026-01-09"
         }
       ],
       "vtype": "date"
@@ -8955,6 +9071,10 @@
         {
           "retrieved": "2025-12-31",
           "version": "2025-12-23"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-22"
         }
       ],
       "name": "ITIS",
@@ -9509,6 +9629,10 @@
         {
           "retrieved": "2025-12-21",
           "version": "4.1.223"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "4.1.226"
         }
       ],
       "name": "Mass spectrometry ontology",
@@ -10063,6 +10187,10 @@
         {
           "retrieved": "2025-11-02",
           "version": "2025-10-29"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-13"
         }
       ],
       "vtype": "date"
@@ -10631,6 +10759,10 @@
         {
           "retrieved": "2021-04-14",
           "version": "2017-02-07"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-09"
         }
       ],
       "name": "Mouse adult gross anatomy",
@@ -11128,6 +11260,11 @@
           "retrieved": "2026-01-14",
           "version": "25.10d",
           "date": "2025-10-27"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "26.01d",
+          "date": "2026-01-26"
         }
       ],
       "name": "National Cancer Institute Thesaurus",
@@ -13269,6 +13406,42 @@
         {
           "retrieved": "2026-01-14",
           "version": "2026-01-12"
+        },
+        {
+          "retrieved": "2026-01-15",
+          "version": "2026-01-13"
+        },
+        {
+          "retrieved": "2026-01-16",
+          "version": "2026-01-14"
+        },
+        {
+          "retrieved": "2026-01-17",
+          "version": "2026-01-15"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-16"
+        },
+        {
+          "retrieved": "2026-01-22",
+          "version": "2026-01-20"
+        },
+        {
+          "retrieved": "2026-01-23",
+          "version": "2026-01-21"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-22"
+        },
+        {
+          "retrieved": "2026-01-25",
+          "version": "2026-01-23"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-26"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -14560,6 +14733,10 @@
         {
           "retrieved": "2025-12-21",
           "version": "7.96"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "7.97"
         }
       ],
       "name": "Pathway ontology",
@@ -14655,6 +14832,11 @@
           "retrieved": "2026-01-14",
           "version": "38.1",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam38.1/"
+        },
+        {
+          "retrieved": "2026-01-23",
+          "version": "38.2",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam38.2/"
         }
       ],
       "vtype": "semver_minor"
@@ -14978,6 +15160,10 @@
         {
           "retrieved": "2025-11-21",
           "version": "2025-10-31"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-09"
         }
       ],
       "vtype": "date"
@@ -15024,6 +15210,10 @@
         {
           "retrieved": "2025-12-21",
           "version": "2025-12-16"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-08"
         }
       ],
       "vtype": "date"
@@ -15059,6 +15249,10 @@
         {
           "retrieved": "2025-11-21",
           "version": "2025-11-07"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-14"
         }
       ],
       "vtype": "date"
@@ -16382,6 +16576,14 @@
         {
           "retrieved": "2026-01-13",
           "version": "2026-01-10"
+        },
+        {
+          "retrieved": "2026-01-20",
+          "version": "2026-01-17"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-24"
         }
       ],
       "name": "Rat Genome Database",
@@ -16943,6 +17145,11 @@
           "retrieved": "2025-06-19",
           "version": "139",
           "date": "2025-06-18"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "140",
+          "date": "2026-01-21"
         }
       ],
       "vtype": "date"
@@ -17567,6 +17774,14 @@
         {
           "retrieved": "2025-12-04",
           "version": "2d1a7f9"
+        },
+        {
+          "retrieved": "2026-01-17",
+          "version": "aee8c14"
+        },
+        {
+          "retrieved": "2026-01-23",
+          "version": "d34325e"
         }
       ],
       "name": "Software Package Data Exchange License",
@@ -21355,6 +21570,66 @@
         {
           "retrieved": "2026-01-14",
           "version": "2026-01-14"
+        },
+        {
+          "retrieved": "2026-01-15",
+          "version": "2026-01-15"
+        },
+        {
+          "retrieved": "2026-01-16",
+          "version": "2026-01-16"
+        },
+        {
+          "retrieved": "2026-01-17",
+          "version": "2026-01-17"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-18"
+        },
+        {
+          "retrieved": "2026-01-19",
+          "version": "2026-01-19"
+        },
+        {
+          "retrieved": "2026-01-20",
+          "version": "2026-01-20"
+        },
+        {
+          "retrieved": "2026-01-21",
+          "version": "2026-01-21"
+        },
+        {
+          "retrieved": "2026-01-22",
+          "version": "2026-01-22"
+        },
+        {
+          "retrieved": "2026-01-23",
+          "version": "2026-01-23"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-24"
+        },
+        {
+          "retrieved": "2026-01-25",
+          "version": "2026-01-25"
+        },
+        {
+          "retrieved": "2026-01-26",
+          "version": "2026-01-26"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-27"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-28"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-29"
         }
       ],
       "name": "SwissLipids",
@@ -22471,6 +22746,10 @@
         {
           "retrieved": "2023-06-29",
           "version": "2023-05-25"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-09"
         }
       ],
       "name": "Units of measurement ontology",
@@ -22870,6 +23149,10 @@
         {
           "retrieved": "2025-12-07",
           "version": "2025-12-02"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-13"
         }
       ],
       "vtype": "date"
@@ -27988,6 +28271,66 @@
         {
           "retrieved": "2026-01-14",
           "version": "2026-01-12"
+        },
+        {
+          "retrieved": "2026-01-15",
+          "version": "2026-01-13"
+        },
+        {
+          "retrieved": "2026-01-16",
+          "version": "2026-01-14"
+        },
+        {
+          "retrieved": "2026-01-17",
+          "version": "2026-01-15"
+        },
+        {
+          "retrieved": "2026-01-18",
+          "version": "2026-01-16"
+        },
+        {
+          "retrieved": "2026-01-19",
+          "version": "2026-01-17"
+        },
+        {
+          "retrieved": "2026-01-20",
+          "version": "2026-01-18"
+        },
+        {
+          "retrieved": "2026-01-21",
+          "version": "2026-01-19"
+        },
+        {
+          "retrieved": "2026-01-22",
+          "version": "2026-01-20"
+        },
+        {
+          "retrieved": "2026-01-23",
+          "version": "2026-01-21"
+        },
+        {
+          "retrieved": "2026-01-24",
+          "version": "2026-01-22"
+        },
+        {
+          "retrieved": "2026-01-25",
+          "version": "2026-01-23"
+        },
+        {
+          "retrieved": "2026-01-26",
+          "version": "2026-01-24"
+        },
+        {
+          "retrieved": "2026-01-27",
+          "version": "2026-01-25"
+        },
+        {
+          "retrieved": "2026-01-28",
+          "version": "2026-01-26"
+        },
+        {
+          "retrieved": "2026-01-29",
+          "version": "2026-01-27"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.8.233 → bioversions-0.8.249}/src/bioversions/sources/__init__.py

@@ -64,6 +64,7 @@ from .reactome import ReactomeGetter
 from .rfam import RfamGetter
 from .rgd import RGDGetter
 from .rhea import RheaGetter
+from .ror import RORGetter
 from .rxnorm import RxNormGetter
 from .sgd import SgdGetter
 from .signor import SignorGetter
@@ -134,6 +135,7 @@ __all__ = [
     "PombaseGetter",
     "PubChemGetter",
     "RGDGetter",
+    "RORGetter",
     "ReactomeGetter",
     "RfamGetter",
     "RheaGetter",

bioversions-0.8.249/src/bioversions/sources/ror.py

@@ -0,0 +1,27 @@
+"""A getter for ROR."""
+
+from bioversions.utils import Getter, VersionType
+
+__all__ = [
+    "RORGetter",
+]
+
+
+class RORGetter(Getter):
+    """A getter for ROR."""
+
+    bioregistry_id = "ror"
+    name = "Research Organization Registry"
+    date_fmt = "%Y-%m-%d"
+    version_type = VersionType.date
+
+    def get(self) -> dict[str, str]:
+        """Get the latest ROR version."""
+        import ror_downloader
+
+        version_info = ror_downloader.get_version_info(download=False)
+        return {"version": version_info.version, "date": version_info.date.isoformat()}
+
+
+if __name__ == "__main__":
+    RORGetter.print()

{bioversions-0.8.233 → bioversions-0.8.249}/src/bioversions/version.py

@@ -11,7 +11,7 @@ __all__ = [
     "get_version",
 ]
 
-VERSION = "0.8.233"
+VERSION = "0.8.249"
 
 
 def get_git_hash() -> str | None: