bioversions 0.8.1__tar.gz → 0.8.3__tar.gz

{bioversions-0.8.1 → bioversions-0.8.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bioversions
-Version: 0.8.1
+Version: 0.8.3
 Summary: Get the current version for biological databases
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases
 Author: Charles Tapley Hoyt

{bioversions-0.8.1 → bioversions-0.8.3}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "uv_build"
 
 [project]
 name = "bioversions"
-version = "0.8.1"
+version = "0.8.3"
 description = "Get the current version for biological databases"
 readme = "README.md"
 authors = [
@@ -260,7 +260,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.8.1"
+current_version = "0.8.3"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioversions-0.8.1 → bioversions-0.8.3}/src/bioversions/resources/update.py

@@ -107,6 +107,8 @@ def _update(force: bool):  # noqa:C901
             text += f"## {t.name}\n\nUsing class: `{t.clstype}`\n\n"
             text += f"```python-traceback\n{t.trace}\n```\n\n"
         FAILURES_PATH.write_text(text.rstrip() + "\n")
+    else:
+        FAILURES_PATH.write_text("# No Errors :)\n")
 
 
 def _log_update(bv) -> None:

{bioversions-0.8.1 → bioversions-0.8.3}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 991,
-    "date": "2025-05-07",
+    "revision": 993,
+    "date": "2025-05-08",
     "author": "runner"
   },
   "database": [
@@ -533,6 +533,11 @@
           "retrieved": "2025-05-07",
           "version": "2025-05-06",
           "homepage": "https://antibodyregistry.org/"
+        },
+        {
+          "retrieved": "2025-05-07",
+          "version": "2025-05-07",
+          "homepage": "https://antibodyregistry.org/"
         }
       ],
       "name": "Antibody Registry",
@@ -4141,6 +4146,12 @@
           "version": "113",
           "homepage": "https://www.ensembl.org",
           "date": "2024-10-01"
+        },
+        {
+          "retrieved": "2025-05-07",
+          "version": "114",
+          "homepage": "https://www.ensembl.org",
+          "date": "2025-05-01"
         }
       ],
       "name": "Ensembl",
@@ -10572,6 +10583,10 @@
         {
           "retrieved": "2025-05-07",
           "version": "2025-05-05"
+        },
+        {
+          "retrieved": "2025-05-07",
+          "version": "2025-05-06"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -17125,6 +17140,10 @@
         {
           "retrieved": "2025-05-07",
           "version": "2025-05-07"
+        },
+        {
+          "retrieved": "2025-05-08",
+          "version": "2025-05-08"
         }
       ],
       "name": "SwissLipids",
@@ -22677,6 +22696,10 @@
         {
           "retrieved": "2025-05-07",
           "version": "2025-05-05"
+        },
+        {
+          "retrieved": "2025-05-07",
+          "version": "2025-05-06"
         }
       ],
       "name": "Zebrafish Information Network",

bioversions-0.8.3/src/bioversions/sources/rfam.py

@@ -0,0 +1,31 @@
+"""A getter for Rfam."""
+
+import requests
+
+from bioversions.utils import Getter, VersionType
+
+__all__ = [
+    "RfamGetter",
+]
+
+
+class RfamGetter(Getter):
+    """A getter for Rfam."""
+
+    bioregistry_id = "rfam"
+    name = "Rfam"
+    homepage_fmt = "https://ftp.ebi.ac.uk/pub/databases/Rfam/{version}/"
+    version_type = VersionType.semver_minor
+
+    def get(self) -> str:
+        """Get the latest Rfam version number."""
+        res = requests.get("https://ftp.ebi.ac.uk/pub/databases/Rfam/CURRENT/README", timeout=15)
+        for line in res.iter_lines():
+            line = line.decode("utf8").strip()
+            if line.startswith("Release "):
+                return line[len("Release ") :]
+        raise ValueError
+
+
+if __name__ == "__main__":
+    RfamGetter.print()

{bioversions-0.8.1 → bioversions-0.8.3}/src/bioversions/version.py

@@ -8,7 +8,7 @@ __all__ = [
     "get_git_hash",
 ]
 
-VERSION = "0.8.1"
+VERSION = "0.8.3"
 
 
 def get_git_hash() -> str:

bioversions-0.8.1/src/bioversions/sources/rfam.py

@@ -1,24 +0,0 @@
-"""A getter for Rfam."""
-
-from bioversions.utils import Getter, VersionType, _get_ftp_version
-
-__all__ = [
-    "RfamGetter",
-]
-
-
-class RfamGetter(Getter):
-    """A getter for Rfam."""
-
-    bioregistry_id = "rfam"
-    name = "Rfam"
-    homepage_fmt = "ftp://ftp.ebi.ac.uk/pub/databases/Rfam/{version}/"
-    version_type = VersionType.semver_minor
-
-    def get(self):
-        """Get the latest Rfam version number."""
-        return _get_ftp_version("ftp.ebi.ac.uk", "pub/databases/Rfam/")
-
-
-if __name__ == "__main__":
-    RfamGetter.print()