bioversions 0.7.57__tar.gz → 0.7.59__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (80) hide show
  1. {bioversions-0.7.57 → bioversions-0.7.59}/PKG-INFO +1 -1
  2. {bioversions-0.7.57 → bioversions-0.7.59}/pyproject.toml +2 -2
  3. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/resources/update.py +1 -1
  4. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/resources/versions.json +31 -2
  5. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/version.py +1 -1
  6. {bioversions-0.7.57 → bioversions-0.7.59}/LICENSE +0 -0
  7. {bioversions-0.7.57 → bioversions-0.7.59}/README.md +0 -0
  8. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/__init__.py +0 -0
  9. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/__main__.py +0 -0
  10. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/charts.py +0 -0
  11. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/cli.py +0 -0
  12. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/py.typed +0 -0
  13. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/resources/__init__.py +0 -0
  14. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/slack_client.py +0 -0
  15. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/__init__.py +0 -0
  16. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/antibodyregistry.py +0 -0
  17. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/bigg.py +0 -0
  18. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/biogrid.py +0 -0
  19. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/cellosaurus.py +0 -0
  20. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/chebi.py +0 -0
  21. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/chembl.py +0 -0
  22. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/chemidplus.py +0 -0
  23. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/civic.py +0 -0
  24. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/complexportal.py +0 -0
  25. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/daily.py +0 -0
  26. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/depmap.py +0 -0
  27. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/dgi.py +0 -0
  28. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/disgenet.py +0 -0
  29. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/drugbank.py +0 -0
  30. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/drugcentral.py +0 -0
  31. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/ensembl.py +0 -0
  32. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/expasy.py +0 -0
  33. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/flybase.py +0 -0
  34. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/gtdb.py +0 -0
  35. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/guidetopharmacology.py +0 -0
  36. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/hgnc.py +0 -0
  37. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/homologene.py +0 -0
  38. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/icd10.py +0 -0
  39. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/icd11.py +0 -0
  40. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/icf.py +0 -0
  41. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/intact.py +0 -0
  42. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/interpro.py +0 -0
  43. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/itis.py +0 -0
  44. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/kegg.py +0 -0
  45. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/mesh.py +0 -0
  46. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/mgi.py +0 -0
  47. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/mirbase.py +0 -0
  48. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/moalmanac.py +0 -0
  49. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/msigdb.py +0 -0
  50. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/ncit.py +0 -0
  51. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/npass.py +0 -0
  52. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/obo.py +0 -0
  53. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/ols.py +0 -0
  54. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/omim.py +0 -0
  55. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/oncotree.py +0 -0
  56. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/pathbank.py +0 -0
  57. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/pathwaycommons.py +0 -0
  58. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/pfam.py +0 -0
  59. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/pombase.py +0 -0
  60. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/pr.py +0 -0
  61. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/pubchem.py +0 -0
  62. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/reactome.py +0 -0
  63. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/rfam.py +0 -0
  64. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/rgd.py +0 -0
  65. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/rhea.py +0 -0
  66. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/rxnorm.py +0 -0
  67. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/sgd.py +0 -0
  68. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/signor.py +0 -0
  69. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/silva.py +0 -0
  70. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/slm.py +0 -0
  71. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/stringdb.py +0 -0
  72. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/umls.py +0 -0
  73. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/uniprot.py +0 -0
  74. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/unversioned.py +0 -0
  75. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/wikipathways.py +0 -0
  76. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/sources/zfin.py +0 -0
  77. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/templates/base.html +0 -0
  78. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/templates/home.html +0 -0
  79. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/utils.py +0 -0
  80. {bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/wsgi.py +0 -0
{bioversions-0.7.57 → bioversions-0.7.59}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bioversions
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- Version: 0.7.57
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+ Version: 0.7.59
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  Summary: Get the current version for biological databases
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  Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases
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  Author: Charles Tapley Hoyt
{bioversions-0.7.57 → bioversions-0.7.59}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "uv_build"
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  [project]
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  name = "bioversions"
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- version = "0.7.57"
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+ version = "0.7.59"
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  description = "Get the current version for biological databases"
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  readme = "README.md"
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  authors = [
@@ -260,7 +260,7 @@ known-first-party = [
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  docstring-code-format = true
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  [tool.bumpversion]
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- current_version = "0.7.57"
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+ current_version = "0.7.59"
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  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
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  serialize = [
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  "{major}.{minor}.{patch}-{release}+{build}",
{bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/resources/update.py RENAMED
@@ -101,7 +101,7 @@ def _update(force: bool): # noqa:C901
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  click.secho(f"Writing failure summary to {FAILURES_PATH}")
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  text = "# Summary of Errors\n\n"
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  for t in failure_tuples:
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- text += f"- {t.name} - {t.message}\n"
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+ text += f"- **{t.name}**\n `{t.message}`\n"
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  text += "\n"
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  for t in failure_tuples:
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  text += f"## {t.name}\n\nUsing class: `{t.clstype}`\n\n"
{bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/resources/versions.json RENAMED
@@ -1,7 +1,7 @@
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  {
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  "annotations": {
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- "revision": 958,
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- "date": "2025-04-05",
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+ "revision": 960,
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+ "date": "2025-04-06",
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  "author": "runner"
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  },
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  "database": [
@@ -409,6 +409,11 @@
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  "retrieved": "2025-04-05",
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  "version": "2025-04-04",
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  "homepage": "https://antibodyregistry.org/"
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+ },
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+ {
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+ "retrieved": "2025-04-06",
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+ "version": "2025-04-05",
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+ "homepage": "https://antibodyregistry.org/"
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  }
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  ],
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  "name": "Antibody Registry",
@@ -10207,6 +10212,10 @@
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  {
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  "retrieved": "2025-04-05",
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  "version": "2025-04-03"
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+ },
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+ {
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+ "retrieved": "2025-04-06",
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+ "version": "2025-04-04"
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  }
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  ],
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  "name": "Online Mendelian Inheritance in Man",
@@ -13798,6 +13807,10 @@
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  {
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  "retrieved": "2021-11-14",
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  "version": "2020-01-31"
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+ },
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+ {
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+ "retrieved": "2025-04-06",
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+ "version": "20200131"
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  }
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  ],
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  "name": "SNOMED CT (International Edition)",
@@ -16569,6 +16582,10 @@
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  {
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  "retrieved": "2025-04-05",
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  "version": "2025-04-05"
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+ },
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+ {
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+ "retrieved": "2025-04-06",
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+ "version": "2025-04-06"
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  }
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  ],
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  "name": "SwissLipids",
@@ -16842,6 +16859,10 @@
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  {
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  "retrieved": "2021-06-14",
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  "version": "2020-07-21"
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+ },
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+ {
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+ "retrieved": "2025-04-06",
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+ "version": "2020-21-07"
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  }
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  ],
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  "vtype": "date"
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  {
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  "retrieved": "2025-04-05",
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  "version": "2025-04-03"
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+ },
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+ {
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+ "retrieved": "2025-04-06",
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+ "version": "2025-04-04"
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+ },
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+ {
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+ "retrieved": "2025-04-06",
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+ "version": "2025-04-05"
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  }
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  ],
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  "name": "Zebrafish Information Network",
{bioversions-0.7.57 → bioversions-0.7.59}/src/bioversions/version.py RENAMED
@@ -8,7 +8,7 @@ __all__ = [
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  "get_git_hash",
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  ]
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- VERSION = "0.7.57"
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+ VERSION = "0.7.59"
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  def get_git_hash() -> str:
{bioversions-0.7.57 → bioversions-0.7.59}/LICENSE RENAMED
File without changes
{bioversions-0.7.57 → bioversions-0.7.59}/README.md RENAMED
File without changes