bioversions 0.6.3__tar.gz → 0.6.5__tar.gz

{bioversions-0.6.3 → bioversions-0.6.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioversions
-Version: 0.6.3
+Version: 0.6.5
 Summary: Get the current version for biological databases
 Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
 Project-URL: Homepage, https://github.com/biopragmatics/bioversions

{bioversions-0.6.3 → bioversions-0.6.5}/docs/_data/versions.yml

@@ -1,7 +1,7 @@
 annotations:
   author: runner
-  date: '2024-12-11'
-  revision: 867
+  date: '2024-12-13'
+  revision: 869
 database:
 - name: A nomenclatural ontology for biological names
   prefix: nomen
@@ -897,6 +897,10 @@ database:
     homepage: ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_34
     retrieved: '2024-04-16'
     version: '34'
+  - date: '2024-12-01'
+    homepage: ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_35
+    retrieved: '2024-12-12'
+    version: '35'
   vtype: sequential
 - name: Chemical Analysis Ontology
   prefix: cao
@@ -2504,6 +2508,9 @@ database:
   - homepage: http://ftp.flybase.net/releases/FB2024_05/
     retrieved: '2024-10-20'
     version: '2024_05'
+  - homepage: http://ftp.flybase.net/releases/FB2024_06/
+    retrieved: '2024-12-13'
+    version: '2024_06'
   vtype: date
 - name: FlyBase Controlled Vocabulary
   prefix: fbcv
@@ -4412,6 +4419,9 @@ database:
   - date: '2024-10-28'
     retrieved: '2024-11-14'
     version: 24.10d
+  - date: '2024-11-25'
+    retrieved: '2024-12-12'
+    version: 24.11d
   vtype: other
 - name: NCBI Gene
   prefix: ncbigene
@@ -5079,6 +5089,12 @@ database:
   - date: '2024-12-09'
     retrieved: '2024-12-11'
     version: December 9, 2024
+  - date: '2024-12-10'
+    retrieved: '2024-12-12'
+    version: December 10, 2024
+  - date: '2024-12-11'
+    retrieved: '2024-12-13'
+    version: December 11, 2024
   vtype: date
 - name: 'OntoAvida: ontology for Avida digital evolution platform'
   prefix: ontoavida
@@ -5744,6 +5760,9 @@ database:
   - homepage: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam37.1/
     retrieved: '2024-10-10'
     version: '37.1'
+  - homepage: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam37.2/
+    retrieved: '2024-12-12'
+    version: '37.2'
   vtype: semver_minor
 - name: Phenotype And Trait Ontology
   prefix: pato
@@ -8112,6 +8131,10 @@ database:
     version: '2024-12-10'
   - retrieved: '2024-12-11'
     version: '2024-12-11'
+  - retrieved: '2024-12-12'
+    version: '2024-12-12'
+  - retrieved: '2024-12-13'
+    version: '2024-12-13'
   vtype: date
 - name: SWO (The Software Ontology)
   prefix: swo
@@ -10827,6 +10850,10 @@ database:
     version: '2024-12-08'
   - retrieved: '2024-12-11'
     version: '2024-12-09'
+  - retrieved: '2024-12-12'
+    version: '2024-12-10'
+  - retrieved: '2024-12-13'
+    version: '2024-12-11'
   vtype: date
 - name: Zebrafish Phenotype Ontology
   prefix: zp

{bioversions-0.6.3 → bioversions-0.6.5}/docs/failures.md

@@ -13,13 +13,13 @@ Traceback (most recent call last):
   File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 974, in json
     return complexjson.loads(self.text, **kwargs)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-  File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/json/__init__.py", line 346, in loads
+  File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/__init__.py", line 346, in loads
     return _default_decoder.decode(s)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^
-  File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/json/decoder.py", line 337, in decode
+  File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/decoder.py", line 338, in decode
     obj, end = self.raw_decode(s, idx=_w(s, 0).end())
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-  File "/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/json/decoder.py", line 355, in raw_decode
+  File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/decoder.py", line 356, in raw_decode
     raise JSONDecodeError("Expecting value", s, err.value) from None
 json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
 

{bioversions-0.6.3 → bioversions-0.6.5}/docs/img/has_release_url.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-12-11T01:07:07.046383</dc:date>
+    <dc:date>2024-12-13T01:07:57.132807</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.6.3 → bioversions-0.6.5}/docs/img/version_date_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-12-11T01:07:06.992425</dc:date>
+    <dc:date>2024-12-13T01:07:57.080005</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.6.3 → bioversions-0.6.5}/docs/img/version_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-12-11T01:07:06.836346</dc:date>
+    <dc:date>2024-12-13T01:07:56.948476</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.6.3 → bioversions-0.6.5}/docs/source/conf.py

@@ -26,7 +26,7 @@ copyright = f"{date.today().year}, Charles Tapley Hoyt"
 author = "Charles Tapley Hoyt"
 
 # The full version, including alpha/beta/rc tags.
-release = "0.6.3"
+release = "0.6.5"
 
 # The short X.Y version.
 parsed_version = re.match(

{bioversions-0.6.3 → bioversions-0.6.5}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "bioversions"
-version = "0.6.3"
+version = "0.6.5"
 description = "Get the current version for biological databases"
 readme = "README.md"
 authors = [
@@ -222,7 +222,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.6.3"
+current_version = "0.6.5"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioversions-0.6.3 → bioversions-0.6.5}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 867,
-    "date": "2024-12-11",
+    "revision": 869,
+    "date": "2024-12-13",
     "author": "runner"
   },
   "database": [
@@ -1642,6 +1642,12 @@
           "version": "34",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_34",
           "date": "2024-03-28"
+        },
+        {
+          "retrieved": "2024-12-12",
+          "version": "35",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_35",
+          "date": "2024-12-01"
         }
       ],
       "vtype": "sequential",
@@ -4604,6 +4610,11 @@
           "retrieved": "2024-10-20",
           "version": "2024_05",
           "homepage": "http://ftp.flybase.net/releases/FB2024_05/"
+        },
+        {
+          "retrieved": "2024-12-13",
+          "version": "2024_06",
+          "homepage": "http://ftp.flybase.net/releases/FB2024_06/"
         }
       ],
       "name": "FlyBase",
@@ -8011,6 +8022,11 @@
           "retrieved": "2024-11-14",
           "version": "24.10d",
           "date": "2024-10-28"
+        },
+        {
+          "retrieved": "2024-12-12",
+          "version": "24.11d",
+          "date": "2024-11-25"
         }
       ],
       "name": "National Cancer Institute Thesaurus",
@@ -9167,6 +9183,16 @@
           "retrieved": "2024-12-11",
           "version": "December 9, 2024",
           "date": "2024-12-09"
+        },
+        {
+          "retrieved": "2024-12-12",
+          "version": "December 10, 2024",
+          "date": "2024-12-10"
+        },
+        {
+          "retrieved": "2024-12-13",
+          "version": "December 11, 2024",
+          "date": "2024-12-11"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -10393,6 +10419,11 @@
           "retrieved": "2024-10-10",
           "version": "37.1",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam37.1/"
+        },
+        {
+          "retrieved": "2024-12-12",
+          "version": "37.2",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam37.2/"
         }
       ],
       "vtype": "semver_minor"
@@ -14901,6 +14932,14 @@
         {
           "retrieved": "2024-12-11",
           "version": "2024-12-11"
+        },
+        {
+          "retrieved": "2024-12-12",
+          "version": "2024-12-12"
+        },
+        {
+          "retrieved": "2024-12-13",
+          "version": "2024-12-13"
         }
       ],
       "name": "SwissLipids",
@@ -19877,6 +19916,14 @@
         {
           "retrieved": "2024-12-11",
           "version": "2024-12-09"
+        },
+        {
+          "retrieved": "2024-12-12",
+          "version": "2024-12-10"
+        },
+        {
+          "retrieved": "2024-12-13",
+          "version": "2024-12-11"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.6.3 → bioversions-0.6.5}/src/bioversions/version.py

@@ -7,7 +7,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.6.3"
+VERSION = "0.6.5"
 
 
 def get_git_hash() -> str: