bioversions 0.6.13__tar.gz → 0.6.14__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (108) hide show
  1. {bioversions-0.6.13 → bioversions-0.6.14}/PKG-INFO +1 -1
  2. {bioversions-0.6.13 → bioversions-0.6.14}/docs/_data/versions.yml +21 -2
  3. {bioversions-0.6.13 → bioversions-0.6.14}/docs/img/has_release_url.svg +1 -1
  4. {bioversions-0.6.13 → bioversions-0.6.14}/docs/img/version_date_types.svg +1 -1
  5. {bioversions-0.6.13 → bioversions-0.6.14}/docs/img/version_types.svg +1 -1
  6. {bioversions-0.6.13 → bioversions-0.6.14}/docs/source/conf.py +1 -1
  7. {bioversions-0.6.13 → bioversions-0.6.14}/pyproject.toml +2 -2
  8. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/resources/versions.json +39 -2
  9. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/version.py +1 -1
  10. {bioversions-0.6.13 → bioversions-0.6.14}/.cruft.json +0 -0
  11. {bioversions-0.6.13 → bioversions-0.6.14}/.github/CODE_OF_CONDUCT.md +0 -0
  12. {bioversions-0.6.13 → bioversions-0.6.14}/.github/CONTRIBUTING.md +0 -0
  13. {bioversions-0.6.13 → bioversions-0.6.14}/.github/codecov.yml +0 -0
  14. {bioversions-0.6.13 → bioversions-0.6.14}/.github/workflows/cruft.yml +0 -0
  15. {bioversions-0.6.13 → bioversions-0.6.14}/.github/workflows/tests.yml +0 -0
  16. {bioversions-0.6.13 → bioversions-0.6.14}/.github/workflows/update.yml +0 -0
  17. {bioversions-0.6.13 → bioversions-0.6.14}/.gitignore +0 -0
  18. {bioversions-0.6.13 → bioversions-0.6.14}/.readthedocs.yml +0 -0
  19. {bioversions-0.6.13 → bioversions-0.6.14}/LICENSE +0 -0
  20. {bioversions-0.6.13 → bioversions-0.6.14}/MANIFEST.in +0 -0
  21. {bioversions-0.6.13 → bioversions-0.6.14}/README.md +0 -0
  22. {bioversions-0.6.13 → bioversions-0.6.14}/docs/_config.yml +0 -0
  23. {bioversions-0.6.13 → bioversions-0.6.14}/docs/_includes/footer.html +0 -0
  24. {bioversions-0.6.13 → bioversions-0.6.14}/docs/_includes/head.html +0 -0
  25. {bioversions-0.6.13 → bioversions-0.6.14}/docs/download.md +0 -0
  26. {bioversions-0.6.13 → bioversions-0.6.14}/docs/failures.md +0 -0
  27. {bioversions-0.6.13 → bioversions-0.6.14}/docs/index.md +0 -0
  28. {bioversions-0.6.13 → bioversions-0.6.14}/docs/source/cli.rst +0 -0
  29. {bioversions-0.6.13 → bioversions-0.6.14}/docs/source/index.rst +0 -0
  30. {bioversions-0.6.13 → bioversions-0.6.14}/docs/source/installation.rst +0 -0
  31. {bioversions-0.6.13 → bioversions-0.6.14}/docs/source/logo.png +0 -0
  32. {bioversions-0.6.13 → bioversions-0.6.14}/docs/source/usage.rst +0 -0
  33. {bioversions-0.6.13 → bioversions-0.6.14}/docs/summary.md +0 -0
  34. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/__init__.py +0 -0
  35. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/__main__.py +0 -0
  36. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/charts.py +0 -0
  37. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/cli.py +0 -0
  38. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/py.typed +0 -0
  39. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/resources/__init__.py +0 -0
  40. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/resources/update.py +0 -0
  41. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/slack_client.py +0 -0
  42. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/__init__.py +0 -0
  43. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/antibodyregistry.py +0 -0
  44. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/bigg.py +0 -0
  45. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/biogrid.py +0 -0
  46. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/cellosaurus.py +0 -0
  47. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/chebi.py +0 -0
  48. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/chembl.py +0 -0
  49. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/chemidplus.py +0 -0
  50. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/civic.py +0 -0
  51. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/complexportal.py +0 -0
  52. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/daily.py +0 -0
  53. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/depmap.py +0 -0
  54. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/dgi.py +0 -0
  55. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/disgenet.py +0 -0
  56. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/drugbank.py +0 -0
  57. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/drugcentral.py +0 -0
  58. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/ensembl.py +0 -0
  59. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/expasy.py +0 -0
  60. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/flybase.py +0 -0
  61. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/gtdb.py +0 -0
  62. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/guidetopharmacology.py +0 -0
  63. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/hgnc.py +0 -0
  64. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/homologene.py +0 -0
  65. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/icd10.py +0 -0
  66. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/icd11.py +0 -0
  67. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/icf.py +0 -0
  68. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/intact.py +0 -0
  69. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/interpro.py +0 -0
  70. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/itis.py +0 -0
  71. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/kegg.py +0 -0
  72. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/mesh.py +0 -0
  73. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/mgi.py +0 -0
  74. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/mirbase.py +0 -0
  75. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/moalmanac.py +0 -0
  76. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/msigdb.py +0 -0
  77. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/ncit.py +0 -0
  78. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/npass.py +0 -0
  79. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/obo.py +0 -0
  80. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/ols.py +0 -0
  81. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/omim.py +0 -0
  82. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/oncotree.py +0 -0
  83. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/pathbank.py +0 -0
  84. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/pathwaycommons.py +0 -0
  85. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/pfam.py +0 -0
  86. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/pombase.py +0 -0
  87. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/pr.py +0 -0
  88. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/pubchem.py +0 -0
  89. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/reactome.py +0 -0
  90. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/rfam.py +0 -0
  91. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/rgd.py +0 -0
  92. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/rhea.py +0 -0
  93. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/rxnorm.py +0 -0
  94. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/sgd.py +0 -0
  95. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/slm.py +0 -0
  96. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/stringdb.py +0 -0
  97. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/umls.py +0 -0
  98. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/uniprot.py +0 -0
  99. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/unversioned.py +0 -0
  100. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/wikipathways.py +0 -0
  101. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/sources/zfin.py +0 -0
  102. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/templates/base.html +0 -0
  103. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/templates/home.html +0 -0
  104. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/twitter_client.py +0 -0
  105. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/utils.py +0 -0
  106. {bioversions-0.6.13 → bioversions-0.6.14}/src/bioversions/wsgi.py +0 -0
  107. {bioversions-0.6.13 → bioversions-0.6.14}/tests/test_bioversions.py +0 -0
  108. {bioversions-0.6.13 → bioversions-0.6.14}/tox.ini +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: bioversions
3
- Version: 0.6.13
3
+ Version: 0.6.14
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  Summary: Get the current version for biological databases
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  Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
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  Project-URL: Homepage, https://github.com/biopragmatics/bioversions
@@ -1,7 +1,7 @@
1
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  annotations:
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  author: runner
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- date: '2024-12-21'
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- revision: 877
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+ date: '2024-12-22'
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+ revision: 878
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  database:
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -1067,6 +1067,8 @@ database:
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  version: '2.230'
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  - retrieved: '2024-12-15'
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  version: '2.231'
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+ - retrieved: '2024-12-22'
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+ version: '2.232'
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  vtype: date
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  - name: Clinical Trials Ontology
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  prefix: cto
@@ -2209,6 +2211,8 @@ database:
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  version: '4.188'
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  - retrieved: '2024-12-15'
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  version: '4.189'
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+ - retrieved: '2024-12-22'
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+ version: '4.190'
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  vtype: date
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  - name: Experimental Factor Ontology
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  prefix: efo
@@ -2295,6 +2299,8 @@ database:
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  version: 3.71.0
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  - retrieved: '2024-11-22'
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  version: 3.72.0
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+ - retrieved: '2024-12-22'
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+ version: 3.73.0
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  vtype: semver
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  - name: Exposure ontology
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  prefix: exo
@@ -5144,6 +5150,9 @@ database:
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  - date: '2024-12-19'
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  retrieved: '2024-12-21'
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  version: December 19, 2024
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+ - date: '2024-12-20'
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+ retrieved: '2024-12-22'
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+ version: December 20, 2024
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  vtype: date
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
@@ -5212,6 +5221,8 @@ database:
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  version: '2024-10-03'
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  - retrieved: '2024-11-10'
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  version: '2024-10-25'
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+ - retrieved: '2024-12-22'
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+ version: '2024-12-05'
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  vtype: date
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  - name: Ontology for General Medical Science
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  prefix: ogms
@@ -5974,6 +5985,8 @@ database:
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  releases:
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  - retrieved: '2021-02-02'
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  version: '2018-10-26'
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+ - retrieved: '2024-12-22'
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+ version: '2024-07-09'
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  vtype: date
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  - name: Plant Stress Ontology
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  prefix: pso
@@ -8206,6 +8219,8 @@ database:
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  version: '2024-12-20'
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  - retrieved: '2024-12-21'
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  version: '2024-12-21'
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+ - retrieved: '2024-12-22'
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+ version: '2024-12-22'
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  - name: SWO (The Software Ontology)
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@@ -8858,6 +8873,8 @@ database:
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  version: '2024-11-22'
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  - retrieved: '2024-12-15'
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  version: '2024-11-26'
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+ - retrieved: '2024-12-22'
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+ version: '2024-12-12'
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  vtype: date
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  - name: VEuPathDB Ontology
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@@ -10943,6 +10960,8 @@ database:
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  version: '2024-12-18'
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  - retrieved: '2024-12-21'
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  version: '2024-12-19'
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+ - retrieved: '2024-12-22'
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+ version: '2024-12-20'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-12-21T01:00:53.003670</dc:date>
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+ <dc:date>2024-12-22T01:06:34.127130</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-12-21T01:00:52.908275</dc:date>
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+ <dc:date>2024-12-22T01:06:34.082056</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-12-21T01:00:52.837547</dc:date>
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+ <dc:date>2024-12-22T01:06:33.936328</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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@@ -26,7 +26,7 @@ copyright = f"{date.today().year}, Charles Tapley Hoyt"
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  author = "Charles Tapley Hoyt"
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  # The full version, including alpha/beta/rc tags.
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- release = "0.6.13"
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+ release = "0.6.14"
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  # The short X.Y version.
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  parsed_version = re.match(
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "bioversions"
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- version = "0.6.13"
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+ version = "0.6.14"
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  description = "Get the current version for biological databases"
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  readme = "README.md"
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  authors = [
@@ -222,7 +222,7 @@ known-first-party = [
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  docstring-code-format = true
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  [tool.bumpversion]
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- current_version = "0.6.13"
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+ current_version = "0.6.14"
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  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
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  serialize = [
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  "{major}.{minor}.{patch}-{release}+{build}",
@@ -1,7 +1,7 @@
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  {
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  "annotations": {
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- "revision": 877,
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- "date": "2024-12-21",
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+ "revision": 878,
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+ "date": "2024-12-22",
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  "author": "runner"
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  },
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  "database": [
@@ -1962,6 +1962,10 @@
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  {
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  "retrieved": "2024-12-15",
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  "version": "2.231"
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+ },
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+ {
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+ "retrieved": "2024-12-22",
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+ "version": "2.232"
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  }
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  ],
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  "vtype": "date"
@@ -4037,6 +4041,10 @@
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  {
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  "retrieved": "2024-12-15",
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  "version": "4.189"
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+ },
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+ {
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+ "retrieved": "2024-12-22",
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+ "version": "4.190"
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@@ -4208,6 +4216,10 @@
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  {
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  "retrieved": "2024-11-22",
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  "version": "3.72.0"
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+ },
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+ {
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+ "retrieved": "2024-12-22",
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+ "version": "3.73.0"
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  }
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  "vtype": "semver"
@@ -9282,6 +9294,11 @@
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  "retrieved": "2024-12-21",
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  "version": "December 19, 2024",
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  "date": "2024-12-19"
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+ },
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+ {
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+ "retrieved": "2024-12-22",
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+ "version": "December 20, 2024",
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+ "date": "2024-12-20"
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  }
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  ],
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  "name": "Online Mendelian Inheritance in Man",
@@ -9414,6 +9431,10 @@
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  {
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  "retrieved": "2024-11-10",
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  "version": "2024-10-25"
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+ },
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+ {
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+ "retrieved": "2024-12-22",
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+ "version": "2024-12-05"
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  }
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  ],
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@@ -10824,6 +10845,10 @@
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  {
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10846
  "retrieved": "2021-02-02",
10826
10847
  "version": "2018-10-26"
10848
+ },
10849
+ {
10850
+ "retrieved": "2024-12-22",
10851
+ "version": "2024-07-09"
10827
10852
  }
10828
10853
  ],
10829
10854
  "vtype": "date"
@@ -15073,6 +15098,10 @@
15073
15098
  {
15074
15099
  "retrieved": "2024-12-21",
15075
15100
  "version": "2024-12-21"
15101
+ },
15102
+ {
15103
+ "retrieved": "2024-12-22",
15104
+ "version": "2024-12-22"
15076
15105
  }
15077
15106
  ],
15078
15107
  "name": "SwissLipids",
@@ -16297,6 +16326,10 @@
16297
16326
  {
16298
16327
  "retrieved": "2024-12-15",
16299
16328
  "version": "2024-11-26"
16329
+ },
16330
+ {
16331
+ "retrieved": "2024-12-22",
16332
+ "version": "2024-12-12"
16300
16333
  }
16301
16334
  ],
16302
16335
  "vtype": "date"
@@ -20093,6 +20126,10 @@
20093
20126
  {
20094
20127
  "retrieved": "2024-12-21",
20095
20128
  "version": "2024-12-19"
20129
+ },
20130
+ {
20131
+ "retrieved": "2024-12-22",
20132
+ "version": "2024-12-20"
20096
20133
  }
20097
20134
  ],
20098
20135
  "name": "Zebrafish Information Network",
@@ -7,7 +7,7 @@ __all__ = [
7
7
  "VERSION",
8
8
  ]
9
9
 
10
- VERSION = "0.6.13"
10
+ VERSION = "0.6.14"
11
11
 
12
12
 
13
13
  def get_git_hash() -> str:
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes