bioversions 0.6.11__tar.gz → 0.6.13__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (109) hide show
  1. {bioversions-0.6.11 → bioversions-0.6.13}/PKG-INFO +1 -1
  2. {bioversions-0.6.11 → bioversions-0.6.13}/docs/_data/versions.yml +23 -2
  3. bioversions-0.6.13/docs/failures.md +145 -0
  4. {bioversions-0.6.11 → bioversions-0.6.13}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.6.11 → bioversions-0.6.13}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.6.11 → bioversions-0.6.13}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.6.11 → bioversions-0.6.13}/docs/source/conf.py +1 -1
  8. {bioversions-0.6.11 → bioversions-0.6.13}/pyproject.toml +2 -2
  9. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/resources/versions.json +39 -2
  10. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/version.py +1 -1
  11. bioversions-0.6.11/docs/failures.md +0 -274
  12. {bioversions-0.6.11 → bioversions-0.6.13}/.cruft.json +0 -0
  13. {bioversions-0.6.11 → bioversions-0.6.13}/.github/CODE_OF_CONDUCT.md +0 -0
  14. {bioversions-0.6.11 → bioversions-0.6.13}/.github/CONTRIBUTING.md +0 -0
  15. {bioversions-0.6.11 → bioversions-0.6.13}/.github/codecov.yml +0 -0
  16. {bioversions-0.6.11 → bioversions-0.6.13}/.github/workflows/cruft.yml +0 -0
  17. {bioversions-0.6.11 → bioversions-0.6.13}/.github/workflows/tests.yml +0 -0
  18. {bioversions-0.6.11 → bioversions-0.6.13}/.github/workflows/update.yml +0 -0
  19. {bioversions-0.6.11 → bioversions-0.6.13}/.gitignore +0 -0
  20. {bioversions-0.6.11 → bioversions-0.6.13}/.readthedocs.yml +0 -0
  21. {bioversions-0.6.11 → bioversions-0.6.13}/LICENSE +0 -0
  22. {bioversions-0.6.11 → bioversions-0.6.13}/MANIFEST.in +0 -0
  23. {bioversions-0.6.11 → bioversions-0.6.13}/README.md +0 -0
  24. {bioversions-0.6.11 → bioversions-0.6.13}/docs/_config.yml +0 -0
  25. {bioversions-0.6.11 → bioversions-0.6.13}/docs/_includes/footer.html +0 -0
  26. {bioversions-0.6.11 → bioversions-0.6.13}/docs/_includes/head.html +0 -0
  27. {bioversions-0.6.11 → bioversions-0.6.13}/docs/download.md +0 -0
  28. {bioversions-0.6.11 → bioversions-0.6.13}/docs/index.md +0 -0
  29. {bioversions-0.6.11 → bioversions-0.6.13}/docs/source/cli.rst +0 -0
  30. {bioversions-0.6.11 → bioversions-0.6.13}/docs/source/index.rst +0 -0
  31. {bioversions-0.6.11 → bioversions-0.6.13}/docs/source/installation.rst +0 -0
  32. {bioversions-0.6.11 → bioversions-0.6.13}/docs/source/logo.png +0 -0
  33. {bioversions-0.6.11 → bioversions-0.6.13}/docs/source/usage.rst +0 -0
  34. {bioversions-0.6.11 → bioversions-0.6.13}/docs/summary.md +0 -0
  35. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/__init__.py +0 -0
  36. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/__main__.py +0 -0
  37. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/charts.py +0 -0
  38. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/cli.py +0 -0
  39. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/py.typed +0 -0
  40. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/resources/__init__.py +0 -0
  41. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/resources/update.py +0 -0
  42. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/slack_client.py +0 -0
  43. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/__init__.py +0 -0
  44. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/antibodyregistry.py +0 -0
  45. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/bigg.py +0 -0
  46. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/biogrid.py +0 -0
  47. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/cellosaurus.py +0 -0
  48. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/chebi.py +0 -0
  49. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/chembl.py +0 -0
  50. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/chemidplus.py +0 -0
  51. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/civic.py +0 -0
  52. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/complexportal.py +0 -0
  53. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/daily.py +0 -0
  54. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/depmap.py +0 -0
  55. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/dgi.py +0 -0
  56. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/disgenet.py +0 -0
  57. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/drugbank.py +0 -0
  58. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/drugcentral.py +0 -0
  59. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/ensembl.py +0 -0
  60. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/expasy.py +0 -0
  61. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/flybase.py +0 -0
  62. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/gtdb.py +0 -0
  63. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/guidetopharmacology.py +0 -0
  64. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/hgnc.py +0 -0
  65. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/homologene.py +0 -0
  66. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/icd10.py +0 -0
  67. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/icd11.py +0 -0
  68. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/icf.py +0 -0
  69. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/intact.py +0 -0
  70. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/interpro.py +0 -0
  71. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/itis.py +0 -0
  72. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/kegg.py +0 -0
  73. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/mesh.py +0 -0
  74. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/mgi.py +0 -0
  75. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/mirbase.py +0 -0
  76. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/moalmanac.py +0 -0
  77. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/msigdb.py +0 -0
  78. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/ncit.py +0 -0
  79. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/npass.py +0 -0
  80. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/obo.py +0 -0
  81. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/ols.py +0 -0
  82. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/omim.py +0 -0
  83. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/oncotree.py +0 -0
  84. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/pathbank.py +0 -0
  85. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/pathwaycommons.py +0 -0
  86. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/pfam.py +0 -0
  87. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/pombase.py +0 -0
  88. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/pr.py +0 -0
  89. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/pubchem.py +0 -0
  90. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/reactome.py +0 -0
  91. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/rfam.py +0 -0
  92. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/rgd.py +0 -0
  93. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/rhea.py +0 -0
  94. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/rxnorm.py +0 -0
  95. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/sgd.py +0 -0
  96. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/slm.py +0 -0
  97. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/stringdb.py +0 -0
  98. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/umls.py +0 -0
  99. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/uniprot.py +0 -0
  100. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/unversioned.py +0 -0
  101. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/wikipathways.py +0 -0
  102. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/sources/zfin.py +0 -0
  103. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/templates/base.html +0 -0
  104. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/templates/home.html +0 -0
  105. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/twitter_client.py +0 -0
  106. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/utils.py +0 -0
  107. {bioversions-0.6.11 → bioversions-0.6.13}/src/bioversions/wsgi.py +0 -0
  108. {bioversions-0.6.11 → bioversions-0.6.13}/tests/test_bioversions.py +0 -0
  109. {bioversions-0.6.11 → bioversions-0.6.13}/tox.ini +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bioversions
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- Version: 0.6.11
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+ Version: 0.6.13
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  Summary: Get the current version for biological databases
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  Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
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  Project-URL: Homepage, https://github.com/biopragmatics/bioversions
@@ -1,7 +1,7 @@
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  annotations:
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  author: runner
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- date: '2024-12-19'
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- revision: 875
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+ date: '2024-12-21'
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+ revision: 877
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  database:
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -739,6 +739,9 @@ database:
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  - date: '2024-09-10'
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  retrieved: '2024-09-11'
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  version: '50.0'
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+ - date: '2024-12-19'
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+ retrieved: '2024-12-20'
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+ version: '51.0'
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  vtype: sequential
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  - name: Cellular Microscopy Phenotype Ontology
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  prefix: cmpo
@@ -1619,6 +1622,10 @@ database:
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  homepage: https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-11-27
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  retrieved: '2024-12-03'
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  version: '2024-11-27'
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+ - date: '2024-12-18'
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+ homepage: https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-12-18
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+ retrieved: '2024-12-20'
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+ version: '2024-12-18'
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  vtype: date
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  - name: DisGeNet
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  releases:
@@ -5131,6 +5138,12 @@ database:
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  - date: '2024-12-17'
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  retrieved: '2024-12-19'
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  version: December 17, 2024
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+ - date: '2024-12-18'
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+ retrieved: '2024-12-20'
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+ version: December 18, 2024
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+ - date: '2024-12-19'
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+ retrieved: '2024-12-21'
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+ version: December 19, 2024
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  vtype: date
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
@@ -8189,6 +8202,10 @@ database:
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  version: '2024-12-18'
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  - retrieved: '2024-12-19'
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  version: '2024-12-19'
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+ - retrieved: '2024-12-20'
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+ version: '2024-12-20'
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+ - retrieved: '2024-12-21'
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+ version: '2024-12-21'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -10922,6 +10939,10 @@ database:
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  version: '2024-12-16'
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  - retrieved: '2024-12-19'
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  version: '2024-12-17'
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+ - retrieved: '2024-12-20'
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+ version: '2024-12-18'
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+ - retrieved: '2024-12-21'
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+ version: '2024-12-19'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -0,0 +1,145 @@
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+ # Summary of Errors
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+
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+ - DisGeNet - failed to resolve DisGeNet
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+ - Antibody Registry - failed to resolve Antibody Registry
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+ - DrugBank - failed to resolve DrugBank
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+
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+ ## DisGeNet
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+
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+ Using class: `DisGeNetGetter`
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+
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+ ```python-traceback
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+ Traceback (most recent call last):
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 974, in json
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+ return complexjson.loads(self.text, **kwargs)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/__init__.py", line 346, in loads
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+ return _default_decoder.decode(s)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/decoder.py", line 338, in decode
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+ obj, end = self.raw_decode(s, idx=_w(s, 0).end())
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/decoder.py", line 356, in raw_decode
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+ raise JSONDecodeError("Expecting value", s, err.value) from None
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+ json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
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+
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+ During handling of the above exception, another exception occurred:
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+
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+ Traceback (most recent call last):
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 216, in _iter_versions
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+ yv = resolve(cls.name)
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+ ^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 169, in resolve
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+ return _resolve_helper_cached(name)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
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+ return _calc_entry(core, key, func, args, kwds)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
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+ func_res = func(*args, **kwds)
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+ ^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 176, in _resolve_helper_cached
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+ return _resolve_helper(name)
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+ ^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 182, in _resolve_helper
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+ return getter.resolve()
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+ ^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 216, in resolve
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+ version=cls.version,
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+ ^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 94, in version
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+ if isinstance(cls._cache_prop, str):
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+ ^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 88, in _cache_prop
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+ cls._cache = cls().get()
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+ ^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/disgenet.py", line 24, in get
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+ res_json = res.json()
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+ ^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 978, in json
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+ raise RequestsJSONDecodeError(e.msg, e.doc, e.pos)
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+ requests.exceptions.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
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+
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+ ```
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+
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+ ## Antibody Registry
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+
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+ Using class: `AntibodyRegistryGetter`
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+
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+ ```python-traceback
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+ Traceback (most recent call last):
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 216, in _iter_versions
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+ yv = resolve(cls.name)
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+ ^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 169, in resolve
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+ return _resolve_helper_cached(name)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
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+ return _calc_entry(core, key, func, args, kwds)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
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+ func_res = func(*args, **kwds)
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+ ^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 176, in _resolve_helper_cached
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+ return _resolve_helper(name)
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+ ^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 182, in _resolve_helper
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+ return getter.resolve()
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+ ^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 216, in resolve
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+ version=cls.version,
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+ ^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 94, in version
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+ if isinstance(cls._cache_prop, str):
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+ ^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 88, in _cache_prop
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+ cls._cache = cls().get()
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+ ^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/antibodyregistry.py", line 21, in get
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+ return soup.find(**{"class": "footer"}).find("a").text.lstrip("v")
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ AttributeError: 'NoneType' object has no attribute 'find'
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+
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+ ```
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+
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+ ## DrugBank
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+
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+ Using class: `DrugBankGetter`
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+
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+ ```python-traceback
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+ Traceback (most recent call last):
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 216, in _iter_versions
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+ yv = resolve(cls.name)
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+ ^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 169, in resolve
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+ return _resolve_helper_cached(name)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
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+ return _calc_entry(core, key, func, args, kwds)
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+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
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+ func_res = func(*args, **kwds)
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+ ^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 176, in _resolve_helper_cached
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+ return _resolve_helper(name)
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+ ^^^^^^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 182, in _resolve_helper
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+ return getter.resolve()
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+ ^^^^^^^^^^^^^^^^
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+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 216, in resolve
130
+ version=cls.version,
131
+ ^^^^^^^^^^^
132
+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 94, in version
133
+ if isinstance(cls._cache_prop, str):
134
+ ^^^^^^^^^^^^^^^
135
+ File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 88, in _cache_prop
136
+ cls._cache = cls().get()
137
+ ^^^^^^^^^^^
138
+ File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/drugbank.py", line 28, in get
139
+ res.raise_for_status()
140
+ File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 1024, in raise_for_status
141
+ raise HTTPError(http_error_msg, response=self)
142
+ requests.exceptions.HTTPError: 403 Client Error: Forbidden for url: https://go.drugbank.com/releases.json
143
+
144
+ ```
145
+
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-12-19T01:05:15.034275</dc:date>
9
+ <dc:date>2024-12-21T01:00:53.003670</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-12-19T01:05:14.918357</dc:date>
9
+ <dc:date>2024-12-21T01:00:52.908275</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-12-19T01:05:14.842043</dc:date>
9
+ <dc:date>2024-12-21T01:00:52.837547</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -26,7 +26,7 @@ copyright = f"{date.today().year}, Charles Tapley Hoyt"
26
26
  author = "Charles Tapley Hoyt"
27
27
 
28
28
  # The full version, including alpha/beta/rc tags.
29
- release = "0.6.11"
29
+ release = "0.6.13"
30
30
 
31
31
  # The short X.Y version.
32
32
  parsed_version = re.match(
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
4
4
 
5
5
  [project]
6
6
  name = "bioversions"
7
- version = "0.6.11"
7
+ version = "0.6.13"
8
8
  description = "Get the current version for biological databases"
9
9
  readme = "README.md"
10
10
  authors = [
@@ -222,7 +222,7 @@ known-first-party = [
222
222
  docstring-code-format = true
223
223
 
224
224
  [tool.bumpversion]
225
- current_version = "0.6.11"
225
+ current_version = "0.6.13"
226
226
  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
227
227
  serialize = [
228
228
  "{major}.{minor}.{patch}-{release}+{build}",
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 875,
4
- "date": "2024-12-19",
3
+ "revision": 877,
4
+ "date": "2024-12-21",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -1378,6 +1378,11 @@
1378
1378
  "retrieved": "2024-09-11",
1379
1379
  "version": "50.0",
1380
1380
  "date": "2024-09-10"
1381
+ },
1382
+ {
1383
+ "retrieved": "2024-12-20",
1384
+ "version": "51.0",
1385
+ "date": "2024-12-19"
1381
1386
  }
1382
1387
  ],
1383
1388
  "name": "Cellosaurus",
@@ -2928,6 +2933,12 @@
2928
2933
  "version": "2024-11-27",
2929
2934
  "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-11-27",
2930
2935
  "date": "2024-11-27"
2936
+ },
2937
+ {
2938
+ "retrieved": "2024-12-20",
2939
+ "version": "2024-12-18",
2940
+ "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-12-18",
2941
+ "date": "2024-12-18"
2931
2942
  }
2932
2943
  ],
2933
2944
  "vtype": "date"
@@ -9261,6 +9272,16 @@
9261
9272
  "retrieved": "2024-12-19",
9262
9273
  "version": "December 17, 2024",
9263
9274
  "date": "2024-12-17"
9275
+ },
9276
+ {
9277
+ "retrieved": "2024-12-20",
9278
+ "version": "December 18, 2024",
9279
+ "date": "2024-12-18"
9280
+ },
9281
+ {
9282
+ "retrieved": "2024-12-21",
9283
+ "version": "December 19, 2024",
9284
+ "date": "2024-12-19"
9264
9285
  }
9265
9286
  ],
9266
9287
  "name": "Online Mendelian Inheritance in Man",
@@ -15044,6 +15065,14 @@
15044
15065
  {
15045
15066
  "retrieved": "2024-12-19",
15046
15067
  "version": "2024-12-19"
15068
+ },
15069
+ {
15070
+ "retrieved": "2024-12-20",
15071
+ "version": "2024-12-20"
15072
+ },
15073
+ {
15074
+ "retrieved": "2024-12-21",
15075
+ "version": "2024-12-21"
15047
15076
  }
15048
15077
  ],
15049
15078
  "name": "SwissLipids",
@@ -20056,6 +20085,14 @@
20056
20085
  {
20057
20086
  "retrieved": "2024-12-19",
20058
20087
  "version": "2024-12-17"
20088
+ },
20089
+ {
20090
+ "retrieved": "2024-12-20",
20091
+ "version": "2024-12-18"
20092
+ },
20093
+ {
20094
+ "retrieved": "2024-12-21",
20095
+ "version": "2024-12-19"
20059
20096
  }
20060
20097
  ],
20061
20098
  "name": "Zebrafish Information Network",
@@ -7,7 +7,7 @@ __all__ = [
7
7
  "VERSION",
8
8
  ]
9
9
 
10
- VERSION = "0.6.11"
10
+ VERSION = "0.6.13"
11
11
 
12
12
 
13
13
  def get_git_hash() -> str:
@@ -1,274 +0,0 @@
1
- # Summary of Errors
2
-
3
- - DisGeNet - failed to resolve DisGeNet
4
- - Antibody Registry - failed to resolve Antibody Registry
5
- - DrugBank - failed to resolve DrugBank
6
- - InterPro - failed to resolve InterPro
7
-
8
- ## DisGeNet
9
-
10
- Using class: `DisGeNetGetter`
11
-
12
- ```python-traceback
13
- Traceback (most recent call last):
14
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 974, in json
15
- return complexjson.loads(self.text, **kwargs)
16
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
17
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/__init__.py", line 346, in loads
18
- return _default_decoder.decode(s)
19
- ^^^^^^^^^^^^^^^^^^^^^^^^^^
20
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/decoder.py", line 338, in decode
21
- obj, end = self.raw_decode(s, idx=_w(s, 0).end())
22
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
23
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/json/decoder.py", line 356, in raw_decode
24
- raise JSONDecodeError("Expecting value", s, err.value) from None
25
- json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
26
-
27
- During handling of the above exception, another exception occurred:
28
-
29
- Traceback (most recent call last):
30
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 216, in _iter_versions
31
- yv = resolve(cls.name)
32
- ^^^^^^^^^^^^^^^^^
33
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 169, in resolve
34
- return _resolve_helper_cached(name)
35
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
36
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
37
- return _calc_entry(core, key, func, args, kwds)
38
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
39
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
40
- func_res = func(*args, **kwds)
41
- ^^^^^^^^^^^^^^^^^^^
42
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 176, in _resolve_helper_cached
43
- return _resolve_helper(name)
44
- ^^^^^^^^^^^^^^^^^^^^^
45
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 182, in _resolve_helper
46
- return getter.resolve()
47
- ^^^^^^^^^^^^^^^^
48
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 216, in resolve
49
- version=cls.version,
50
- ^^^^^^^^^^^
51
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 94, in version
52
- if isinstance(cls._cache_prop, str):
53
- ^^^^^^^^^^^^^^^
54
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 88, in _cache_prop
55
- cls._cache = cls().get()
56
- ^^^^^^^^^^^
57
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/disgenet.py", line 24, in get
58
- res_json = res.json()
59
- ^^^^^^^^^^
60
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 978, in json
61
- raise RequestsJSONDecodeError(e.msg, e.doc, e.pos)
62
- requests.exceptions.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
63
-
64
- ```
65
-
66
- ## Antibody Registry
67
-
68
- Using class: `AntibodyRegistryGetter`
69
-
70
- ```python-traceback
71
- Traceback (most recent call last):
72
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 216, in _iter_versions
73
- yv = resolve(cls.name)
74
- ^^^^^^^^^^^^^^^^^
75
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 169, in resolve
76
- return _resolve_helper_cached(name)
77
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
78
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
79
- return _calc_entry(core, key, func, args, kwds)
80
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
81
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
82
- func_res = func(*args, **kwds)
83
- ^^^^^^^^^^^^^^^^^^^
84
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 176, in _resolve_helper_cached
85
- return _resolve_helper(name)
86
- ^^^^^^^^^^^^^^^^^^^^^
87
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 182, in _resolve_helper
88
- return getter.resolve()
89
- ^^^^^^^^^^^^^^^^
90
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 216, in resolve
91
- version=cls.version,
92
- ^^^^^^^^^^^
93
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 94, in version
94
- if isinstance(cls._cache_prop, str):
95
- ^^^^^^^^^^^^^^^
96
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 88, in _cache_prop
97
- cls._cache = cls().get()
98
- ^^^^^^^^^^^
99
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/antibodyregistry.py", line 21, in get
100
- return soup.find(**{"class": "footer"}).find("a").text.lstrip("v")
101
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
102
- AttributeError: 'NoneType' object has no attribute 'find'
103
-
104
- ```
105
-
106
- ## DrugBank
107
-
108
- Using class: `DrugBankGetter`
109
-
110
- ```python-traceback
111
- Traceback (most recent call last):
112
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 216, in _iter_versions
113
- yv = resolve(cls.name)
114
- ^^^^^^^^^^^^^^^^^
115
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 169, in resolve
116
- return _resolve_helper_cached(name)
117
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
118
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
119
- return _calc_entry(core, key, func, args, kwds)
120
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
121
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
122
- func_res = func(*args, **kwds)
123
- ^^^^^^^^^^^^^^^^^^^
124
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 176, in _resolve_helper_cached
125
- return _resolve_helper(name)
126
- ^^^^^^^^^^^^^^^^^^^^^
127
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 182, in _resolve_helper
128
- return getter.resolve()
129
- ^^^^^^^^^^^^^^^^
130
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 216, in resolve
131
- version=cls.version,
132
- ^^^^^^^^^^^
133
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 94, in version
134
- if isinstance(cls._cache_prop, str):
135
- ^^^^^^^^^^^^^^^
136
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 88, in _cache_prop
137
- cls._cache = cls().get()
138
- ^^^^^^^^^^^
139
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/drugbank.py", line 28, in get
140
- res.raise_for_status()
141
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 1024, in raise_for_status
142
- raise HTTPError(http_error_msg, response=self)
143
- requests.exceptions.HTTPError: 403 Client Error: Forbidden for url: https://go.drugbank.com/releases.json
144
-
145
- ```
146
-
147
- ## InterPro
148
-
149
- Using class: `InterProGetter`
150
-
151
- ```python-traceback
152
- Traceback (most recent call last):
153
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 789, in urlopen
154
- response = self._make_request(
155
- ^^^^^^^^^^^^^^^^^^^
156
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 490, in _make_request
157
- raise new_e
158
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 466, in _make_request
159
- self._validate_conn(conn)
160
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 1095, in _validate_conn
161
- conn.connect()
162
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 730, in connect
163
- sock_and_verified = _ssl_wrap_socket_and_match_hostname(
164
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
165
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 909, in _ssl_wrap_socket_and_match_hostname
166
- ssl_sock = ssl_wrap_socket(
167
- ^^^^^^^^^^^^^^^^
168
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 469, in ssl_wrap_socket
169
- ssl_sock = _ssl_wrap_socket_impl(sock, context, tls_in_tls, server_hostname)
170
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
171
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 513, in _ssl_wrap_socket_impl
172
- return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
173
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
174
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/ssl.py", line 455, in wrap_socket
175
- return self.sslsocket_class._create(
176
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
177
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/ssl.py", line 1041, in _create
178
- self.do_handshake()
179
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/ssl.py", line 1319, in do_handshake
180
- self._sslobj.do_handshake()
181
- ConnectionResetError: [Errno 104] Connection reset by peer
182
-
183
- During handling of the above exception, another exception occurred:
184
-
185
- Traceback (most recent call last):
186
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 667, in send
187
- resp = conn.urlopen(
188
- ^^^^^^^^^^^^^
189
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 843, in urlopen
190
- retries = retries.increment(
191
- ^^^^^^^^^^^^^^^^^^
192
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/retry.py", line 474, in increment
193
- raise reraise(type(error), error, _stacktrace)
194
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
195
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/util.py", line 38, in reraise
196
- raise value.with_traceback(tb)
197
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 789, in urlopen
198
- response = self._make_request(
199
- ^^^^^^^^^^^^^^^^^^^
200
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 490, in _make_request
201
- raise new_e
202
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 466, in _make_request
203
- self._validate_conn(conn)
204
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 1095, in _validate_conn
205
- conn.connect()
206
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 730, in connect
207
- sock_and_verified = _ssl_wrap_socket_and_match_hostname(
208
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
209
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 909, in _ssl_wrap_socket_and_match_hostname
210
- ssl_sock = ssl_wrap_socket(
211
- ^^^^^^^^^^^^^^^^
212
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 469, in ssl_wrap_socket
213
- ssl_sock = _ssl_wrap_socket_impl(sock, context, tls_in_tls, server_hostname)
214
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
215
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 513, in _ssl_wrap_socket_impl
216
- return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
217
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
218
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/ssl.py", line 455, in wrap_socket
219
- return self.sslsocket_class._create(
220
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
221
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/ssl.py", line 1041, in _create
222
- self.do_handshake()
223
- File "/opt/hostedtoolcache/Python/3.12.8/x64/lib/python3.12/ssl.py", line 1319, in do_handshake
224
- self._sslobj.do_handshake()
225
- urllib3.exceptions.ProtocolError: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
226
-
227
- During handling of the above exception, another exception occurred:
228
-
229
- Traceback (most recent call last):
230
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 216, in _iter_versions
231
- yv = resolve(cls.name)
232
- ^^^^^^^^^^^^^^^^^
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- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 169, in resolve
234
- return _resolve_helper_cached(name)
235
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
236
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
237
- return _calc_entry(core, key, func, args, kwds)
238
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
239
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
240
- func_res = func(*args, **kwds)
241
- ^^^^^^^^^^^^^^^^^^^
242
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 176, in _resolve_helper_cached
243
- return _resolve_helper(name)
244
- ^^^^^^^^^^^^^^^^^^^^^
245
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 182, in _resolve_helper
246
- return getter.resolve()
247
- ^^^^^^^^^^^^^^^^
248
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 216, in resolve
249
- version=cls.version,
250
- ^^^^^^^^^^^
251
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 94, in version
252
- if isinstance(cls._cache_prop, str):
253
- ^^^^^^^^^^^^^^^
254
- File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 88, in _cache_prop
255
- cls._cache = cls().get()
256
- ^^^^^^^^^^^
257
- File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/interpro.py", line 28, in get
258
- res = session.get(
259
- ^^^^^^^^^^^^
260
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 602, in get
261
- return self.request("GET", url, **kwargs)
262
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
263
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
264
- resp = self.send(prep, **send_kwargs)
265
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
266
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 703, in send
267
- r = adapter.send(request, **kwargs)
268
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
269
- File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 682, in send
270
- raise ConnectionError(err, request=request)
271
- requests.exceptions.ConnectionError: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
272
-
273
- ```
274
-
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