bioversions 0.5.561__tar.gz → 0.5.561.dev0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (112) hide show
  1. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/PKG-INFO +1 -1
  2. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/source/conf.py +1 -1
  3. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/pyproject.toml +2 -2
  4. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/resources/__init__.py +2 -15
  5. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/version.py +1 -1
  6. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.cruft.json +0 -0
  7. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.github/CODE_OF_CONDUCT.md +0 -0
  8. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.github/CONTRIBUTING.md +0 -0
  9. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.github/codecov.yml +0 -0
  10. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.github/workflows/cruft.yml +0 -0
  11. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.github/workflows/tests.yml +0 -0
  12. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.github/workflows/update.yml +0 -0
  13. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.gitignore +0 -0
  14. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.idea/bioversions.iml +0 -0
  15. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.idea/inspectionProfiles/Project_Default.xml +0 -0
  16. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.idea/inspectionProfiles/profiles_settings.xml +0 -0
  17. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.idea/modules.xml +0 -0
  18. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/.readthedocs.yml +0 -0
  19. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/LICENSE +0 -0
  20. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/MANIFEST.in +0 -0
  21. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/README.md +0 -0
  22. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/_config.yml +0 -0
  23. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/_data/versions.yml +0 -0
  24. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/_includes/footer.html +0 -0
  25. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/_includes/head.html +0 -0
  26. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/download.md +0 -0
  27. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/failures.md +0 -0
  28. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/img/has_release_url.svg +0 -0
  29. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/img/version_date_types.svg +0 -0
  30. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/img/version_types.svg +0 -0
  31. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/index.md +0 -0
  32. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/source/cli.rst +0 -0
  33. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/source/index.rst +0 -0
  34. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/source/installation.rst +0 -0
  35. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/source/logo.png +0 -0
  36. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/source/usage.rst +0 -0
  37. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/docs/summary.md +0 -0
  38. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/__init__.py +0 -0
  39. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/__main__.py +0 -0
  40. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/charts.py +0 -0
  41. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/cli.py +0 -0
  42. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/py.typed +0 -0
  43. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/resources/update.py +0 -0
  44. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/resources/versions.json +0 -0
  45. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/slack_client.py +0 -0
  46. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/__init__.py +0 -0
  47. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/antibodyregistry.py +0 -0
  48. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/bigg.py +0 -0
  49. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/biogrid.py +0 -0
  50. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/cellosaurus.py +0 -0
  51. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/chebi.py +0 -0
  52. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/chembl.py +0 -0
  53. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/chemidplus.py +0 -0
  54. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/civic.py +0 -0
  55. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/complexportal.py +0 -0
  56. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/daily.py +0 -0
  57. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/depmap.py +0 -0
  58. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/dgi.py +0 -0
  59. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/disgenet.py +0 -0
  60. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/drugbank.py +0 -0
  61. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/drugcentral.py +0 -0
  62. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/ensembl.py +0 -0
  63. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/expasy.py +0 -0
  64. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/flybase.py +0 -0
  65. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/gtdb.py +0 -0
  66. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/guidetopharmacology.py +0 -0
  67. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/hgnc.py +0 -0
  68. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/homologene.py +0 -0
  69. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/icd10.py +0 -0
  70. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/icd11.py +0 -0
  71. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/icf.py +0 -0
  72. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/intact.py +0 -0
  73. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/interpro.py +0 -0
  74. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/itis.py +0 -0
  75. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/kegg.py +0 -0
  76. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/mesh.py +0 -0
  77. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/mgi.py +0 -0
  78. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/mirbase.py +0 -0
  79. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/moalmanac.py +0 -0
  80. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/msigdb.py +0 -0
  81. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/ncit.py +0 -0
  82. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/npass.py +0 -0
  83. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/obo.py +0 -0
  84. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/ols.py +0 -0
  85. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/omim.py +0 -0
  86. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/oncotree.py +0 -0
  87. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/pathbank.py +0 -0
  88. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/pathwaycommons.py +0 -0
  89. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/pfam.py +0 -0
  90. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/pombase.py +0 -0
  91. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/pr.py +0 -0
  92. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/pubchem.py +0 -0
  93. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/reactome.py +0 -0
  94. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/rfam.py +0 -0
  95. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/rgd.py +0 -0
  96. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/rhea.py +0 -0
  97. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/rxnorm.py +0 -0
  98. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/sgd.py +0 -0
  99. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/slm.py +0 -0
  100. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/stringdb.py +0 -0
  101. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/umls.py +0 -0
  102. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/uniprot.py +0 -0
  103. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/unversioned.py +0 -0
  104. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/wikipathways.py +0 -0
  105. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/sources/zfin.py +0 -0
  106. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/templates/base.html +0 -0
  107. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/templates/home.html +0 -0
  108. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/twitter_client.py +0 -0
  109. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/utils.py +0 -0
  110. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/src/bioversions/wsgi.py +0 -0
  111. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/tests/test_bioversions.py +0 -0
  112. {bioversions-0.5.561 → bioversions-0.5.561.dev0}/tox.ini +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.3
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  Name: bioversions
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- Version: 0.5.561
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+ Version: 0.5.561.dev0
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  Summary: Get the current version for biological databases
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  Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
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  Project-URL: Homepage, https://github.com/biopragmatics/bioversions
@@ -26,7 +26,7 @@ copyright = f"{date.today().year}, Charles Tapley Hoyt"
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  author = "Charles Tapley Hoyt"
27
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28
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  # The full version, including alpha/beta/rc tags.
29
- release = "0.5.561"
29
+ release = "0.5.561-dev"
30
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31
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  # The short X.Y version.
32
32
  parsed_version = re.match(
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
4
4
 
5
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  [project]
6
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  name = "bioversions"
7
- version = "0.5.561"
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+ version = "0.5.561-dev"
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  description = "Get the current version for biological databases"
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  readme = "README.md"
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10
  authors = [
@@ -223,7 +223,7 @@ known-first-party = [
223
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  docstring-code-format = true
224
224
 
225
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  [tool.bumpversion]
226
- current_version = "0.5.561"
226
+ current_version = "0.5.561-dev"
227
227
  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
228
228
  serialize = [
229
229
  "{major}.{minor}.{patch}-{release}+{build}",
@@ -18,7 +18,6 @@ HERE = Path(__file__).parent.resolve()
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18
  VERSIONS_PATH = HERE.joinpath(HERE, "versions.json")
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19
 
20
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  ROOT = HERE.parent.parent.parent.resolve()
21
- PYPROJECT_TOML_PATH = ROOT.joinpath("pyproject.toml")
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  DOCS = ROOT.joinpath("docs")
23
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  EXPORTS_DIRECTORY = DOCS.joinpath("_data")
24
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  EXPORT_PATH = EXPORTS_DIRECTORY.joinpath("versions.yml")
@@ -27,11 +26,6 @@ FAILURES_PATH = DOCS.joinpath("failures.md")
27
26
 
28
27
  def load_versions():
29
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  """Load Bioversions data."""
30
- if not VERSIONS_PATH.is_file():
31
- raise RuntimeError(
32
- f"bioversions was not packaged/built/installed properly -"
33
- f"{VERSIONS_PATH.name} was not found inside the distribution"
34
- )
35
29
  with open(VERSIONS_PATH) as file:
36
30
  return json.load(file)
37
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@@ -41,20 +35,13 @@ def _date_converter(o):
41
35
  return o.strftime("%Y-%m-%d")
42
36
 
43
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44
- def write_versions(versions, indent: int = 2, **kwargs) -> None:
38
+ def write_versions(versions, indent: int = 2, **kwargs):
45
39
  """Write Bioversions data."""
46
- _ensure_editable()
47
40
  with open(VERSIONS_PATH, "w") as file:
48
41
  json.dump(versions, file, indent=indent, default=_date_converter, **kwargs)
49
42
 
50
43
 
51
- def write_export(versions) -> None:
44
+ def write_export(versions):
52
45
  """Write Bioversions data to the export directory."""
53
- _ensure_editable()
54
46
  with open(EXPORT_PATH, "w") as file:
55
47
  yaml.safe_dump(versions, file)
56
-
57
-
58
- def _ensure_editable() -> None:
59
- if not PYPROJECT_TOML_PATH.is_file():
60
- raise RuntimeError("can not make export when bioversions is not installed in editable mode")
@@ -7,7 +7,7 @@ __all__ = [
7
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  "VERSION",
8
8
  ]
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10
- VERSION = "0.5.561"
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+ VERSION = "0.5.561-dev"
11
11
 
12
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13
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  def get_git_hash() -> str: