bioversions 0.5.544__tar.gz → 0.5.546__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.544/src/bioversions.egg-info → bioversions-0.5.546}/PKG-INFO +1 -1
  2. {bioversions-0.5.544 → bioversions-0.5.546}/docs/_data/versions.yml +23 -2
  3. bioversions-0.5.546/docs/failures.md +5 -0
  4. {bioversions-0.5.544 → bioversions-0.5.546}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.544 → bioversions-0.5.546}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.544 → bioversions-0.5.546}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.544 → bioversions-0.5.546}/setup.cfg +1 -1
  8. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/resources/versions.json +39 -2
  9. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.544 → bioversions-0.5.546/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.544/docs/failures.md +0 -8
  12. {bioversions-0.5.544 → bioversions-0.5.546}/LICENSE +0 -0
  13. {bioversions-0.5.544 → bioversions-0.5.546}/MANIFEST.in +0 -0
  14. {bioversions-0.5.544 → bioversions-0.5.546}/README.md +0 -0
  15. {bioversions-0.5.544 → bioversions-0.5.546}/docs/_config.yml +0 -0
  16. {bioversions-0.5.544 → bioversions-0.5.546}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.544 → bioversions-0.5.546}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.544 → bioversions-0.5.546}/docs/download.md +0 -0
  19. {bioversions-0.5.544 → bioversions-0.5.546}/docs/index.md +0 -0
  20. {bioversions-0.5.544 → bioversions-0.5.546}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.544 → bioversions-0.5.546}/docs/summary.md +0 -0
  22. {bioversions-0.5.544 → bioversions-0.5.546}/pyproject.toml +0 -0
  23. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.544 → bioversions-0.5.546}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.544 → bioversions-0.5.546}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.544
3
+ Version: 0.5.546
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-11-12'
4
- revision: 841
3
+ date: '2024-11-14'
4
+ revision: 843
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -2730,6 +2730,10 @@ database:
2730
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  homepage: http://archive.geneontology.org/full/2024-09-08/
2731
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  retrieved: '2024-09-17'
2732
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  version: '2024-09-08'
2733
+ - date: '2024-11-03'
2734
+ homepage: http://archive.geneontology.org/full/2024-11-03/
2735
+ retrieved: '2024-11-13'
2736
+ version: '2024-11-03'
2733
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  vtype: date
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  - name: GENO ontology
2735
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  prefix: geno
@@ -4325,6 +4329,9 @@ database:
4325
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  - date: '2024-09-30'
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  retrieved: '2024-11-05'
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  version: 24.09e
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+ - date: '2024-10-28'
4333
+ retrieved: '2024-11-14'
4334
+ version: 24.10d
4328
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  vtype: other
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  - name: NCBI Gene
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  prefix: ncbigene
@@ -4934,6 +4941,12 @@ database:
4934
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  - date: '2024-11-08'
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  retrieved: '2024-11-10'
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  version: November 8, 2024
4944
+ - date: '2024-11-11'
4945
+ retrieved: '2024-11-13'
4946
+ version: November 11, 2024
4947
+ - date: '2024-11-12'
4948
+ retrieved: '2024-11-14'
4949
+ version: November 12, 2024
4937
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  vtype: date
4938
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
@@ -7881,6 +7894,10 @@ database:
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  version: '2024-11-11'
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  - retrieved: '2024-11-12'
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  version: '2024-11-12'
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+ - retrieved: '2024-11-13'
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+ version: '2024-11-13'
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+ - retrieved: '2024-11-14'
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+ version: '2024-11-14'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -10532,6 +10549,10 @@ database:
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  version: '2024-11-09'
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  - retrieved: '2024-11-12'
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  version: '2024-11-10'
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+ - retrieved: '2024-11-13'
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+ version: '2024-11-11'
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+ - retrieved: '2024-11-14'
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+ version: '2024-11-12'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -0,0 +1,5 @@
1
+ # Errors
2
+
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+ - failed to resolve DisGeNet
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+ - failed to resolve Antibody Registry
5
+ - failed to resolve DrugBank
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-11-12T01:07:03.734271</dc:date>
9
+ <dc:date>2024-11-14T01:01:21.641328</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-11-12T01:07:03.680824</dc:date>
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+ <dc:date>2024-11-14T01:01:21.589700</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-11-12T01:07:03.597967</dc:date>
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+ <dc:date>2024-11-14T01:01:21.508943</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
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  [metadata]
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  name = bioversions
3
- version = 0.5.544
3
+ version = 0.5.546
4
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  description = What's the current version for each biological database?
5
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  long_description = file: README.md
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
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  {
2
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  "annotations": {
3
- "revision": 841,
4
- "date": "2024-11-12",
3
+ "revision": 843,
4
+ "date": "2024-11-14",
5
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  "author": "runner"
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  },
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  "database": [
@@ -4993,6 +4993,12 @@
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  "version": "2024-09-08",
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  "homepage": "http://archive.geneontology.org/full/2024-09-08/",
4995
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  "date": "2024-09-08"
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+ },
4997
+ {
4998
+ "retrieved": "2024-11-13",
4999
+ "version": "2024-11-03",
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+ "homepage": "http://archive.geneontology.org/full/2024-11-03/",
5001
+ "date": "2024-11-03"
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  }
4997
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  ],
4998
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  "vtype": "date"
@@ -7861,6 +7867,11 @@
7861
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  "retrieved": "2024-11-05",
7862
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  "version": "24.09e",
7863
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  "date": "2024-09-30"
7870
+ },
7871
+ {
7872
+ "retrieved": "2024-11-14",
7873
+ "version": "24.10d",
7874
+ "date": "2024-10-28"
7864
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  }
7865
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  ],
7866
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  "name": "National Cancer Institute Thesaurus",
@@ -8919,6 +8930,16 @@
8919
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  "retrieved": "2024-11-10",
8920
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  "version": "November 8, 2024",
8921
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  "date": "2024-11-08"
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+ },
8934
+ {
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+ "retrieved": "2024-11-13",
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+ "version": "November 11, 2024",
8937
+ "date": "2024-11-11"
8938
+ },
8939
+ {
8940
+ "retrieved": "2024-11-14",
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+ "version": "November 12, 2024",
8942
+ "date": "2024-11-12"
8922
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  }
8923
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  ],
8924
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  "name": "Online Mendelian Inheritance in Man",
@@ -14487,6 +14508,14 @@
14487
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  {
14488
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  "retrieved": "2024-11-12",
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  "version": "2024-11-12"
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+ },
14512
+ {
14513
+ "retrieved": "2024-11-13",
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+ "version": "2024-11-13"
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+ },
14516
+ {
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+ "retrieved": "2024-11-14",
14518
+ "version": "2024-11-14"
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  }
14491
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  ],
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  "name": "SwissLipids",
@@ -19339,6 +19368,14 @@
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  {
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  "retrieved": "2024-11-12",
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  "version": "2024-11-10"
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+ },
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+ {
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+ "retrieved": "2024-11-13",
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+ "version": "2024-11-11"
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+ },
19376
+ {
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+ "retrieved": "2024-11-14",
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+ "version": "2024-11-12"
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  }
19343
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  ],
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
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  "VERSION",
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  ]
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- VERSION = "0.5.544"
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+ VERSION = "0.5.546"
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.544
3
+ Version: 0.5.546
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,8 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve DisGeNet
4
- - failed to resolve Antibody Registry
5
- - failed to resolve Cellosaurus
6
- - failed to resolve DrugBank
7
- - failed to resolve ExPASy
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- - failed to resolve Rhea
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