bioversions 0.5.541__tar.gz → 0.5.542__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.541/src/bioversions.egg-info → bioversions-0.5.542}/PKG-INFO +1 -1
  2. {bioversions-0.5.541 → bioversions-0.5.542}/docs/_data/versions.yml +23 -2
  3. bioversions-0.5.542/docs/failures.md +5 -0
  4. {bioversions-0.5.541 → bioversions-0.5.542}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.541 → bioversions-0.5.542}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.541 → bioversions-0.5.542}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.541 → bioversions-0.5.542}/setup.cfg +1 -1
  8. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/resources/versions.json +43 -2
  9. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.541 → bioversions-0.5.542/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.541/docs/failures.md +0 -5
  12. {bioversions-0.5.541 → bioversions-0.5.542}/LICENSE +0 -0
  13. {bioversions-0.5.541 → bioversions-0.5.542}/MANIFEST.in +0 -0
  14. {bioversions-0.5.541 → bioversions-0.5.542}/README.md +0 -0
  15. {bioversions-0.5.541 → bioversions-0.5.542}/docs/_config.yml +0 -0
  16. {bioversions-0.5.541 → bioversions-0.5.542}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.541 → bioversions-0.5.542}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.541 → bioversions-0.5.542}/docs/download.md +0 -0
  19. {bioversions-0.5.541 → bioversions-0.5.542}/docs/index.md +0 -0
  20. {bioversions-0.5.541 → bioversions-0.5.542}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.541 → bioversions-0.5.542}/docs/summary.md +0 -0
  22. {bioversions-0.5.541 → bioversions-0.5.542}/pyproject.toml +0 -0
  23. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.541 → bioversions-0.5.542}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.541 → bioversions-0.5.542}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bioversions
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- Version: 0.5.541
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+ Version: 0.5.542
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  Summary: What's the current version for each biological database?
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
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  annotations:
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  author: runner
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- date: '2024-11-09'
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- revision: 838
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+ date: '2024-11-10'
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+ revision: 839
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  database:
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -1853,6 +1853,8 @@ database:
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  version: '2021-11-17'
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  - retrieved: '2023-05-11'
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  version: '2022-07-19'
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+ - retrieved: '2024-11-10'
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+ version: '2024-10-31'
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  vtype: date
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  - name: eNanoMapper Ontology
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  prefix: enm
@@ -3648,6 +3650,8 @@ database:
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  version: 4.1.179
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  - retrieved: '2024-10-27'
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  version: 4.1.181
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+ - retrieved: '2024-11-10'
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+ version: 4.1.184
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  vtype: date
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  - name: Mathematical modeling ontology
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  prefix: mamo
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  version: '2024-08-06'
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  - retrieved: '2024-10-16'
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  version: '2024-10-01'
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+ - retrieved: '2024-11-10'
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+ version: '2024-11-05'
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  vtype: date
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  - name: MOP
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  prefix: mop
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  - date: '2024-11-07'
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  retrieved: '2024-11-09'
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  version: November 7, 2024
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+ - date: '2024-11-08'
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+ retrieved: '2024-11-10'
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+ version: November 8, 2024
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  vtype: date
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
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  version: '2024-06-10'
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  - retrieved: '2024-10-27'
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  version: '2024-10-03'
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+ - retrieved: '2024-11-10'
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+ version: '2024-10-25'
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  vtype: date
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  - name: Ontology for General Medical Science
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  prefix: ogms
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  version: '2024-11-08'
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  - retrieved: '2024-11-09'
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  version: '2024-11-09'
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+ - retrieved: '2024-11-10'
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+ version: '2024-11-10'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  version: '2017-10-31'
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  - retrieved: '2024-10-16'
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  version: '2024-09-04'
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+ - retrieved: '2024-11-10'
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+ version: '2024-11-02'
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  vtype: date
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  - name: Unified phenotype ontology (uPheno)
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  prefix: upheno
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  version: '2024-05-22'
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  - retrieved: '2024-08-18'
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  version: '2024-08-14'
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+ - retrieved: '2024-11-10'
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+ version: '2024-11-06'
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  vtype: date
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  - name: Vertebrate Skeletal Anatomy Ontology
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  prefix: vsao
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  version: '2024-10-02'
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  - retrieved: '2024-10-27'
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  version: '2024-10-16'
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+ - retrieved: '2024-11-10'
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+ version: '2024-11-05'
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  - name: VEuPathDB Ontology
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  prefix: eupath
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  version: '2024-11-05'
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  - retrieved: '2024-11-09'
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  version: '2024-11-07'
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+ - retrieved: '2024-11-10'
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+ version: '2024-11-08'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -0,0 +1,5 @@
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+ # Errors
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+
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+ - failed to resolve DisGeNet
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+ - failed to resolve Antibody Registry
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+ - failed to resolve BioGRID
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-11-09T00:59:21.643372</dc:date>
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+ <dc:date>2024-11-10T01:05:01.501283</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-11-09T00:59:21.590732</dc:date>
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+ <dc:date>2024-11-10T01:05:01.446648</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-11-09T00:59:21.508359</dc:date>
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+ <dc:date>2024-11-10T01:05:01.362411</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
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  [metadata]
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  name = bioversions
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- version = 0.5.541
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+ version = 0.5.542
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  description = What's the current version for each biological database?
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  long_description = file: README.md
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
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  {
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  "annotations": {
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- "revision": 838,
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- "date": "2024-11-09",
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+ "revision": 839,
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+ "date": "2024-11-10",
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  "author": "runner"
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  },
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  "database": [
@@ -3372,6 +3372,10 @@
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  {
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  "retrieved": "2023-05-11",
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  "version": "2022-07-19"
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+ },
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+ {
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+ "retrieved": "2024-11-10",
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+ "version": "2024-10-31"
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  }
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  ],
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  "vtype": "date"
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  {
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  "retrieved": "2024-10-27",
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  "version": "4.1.181"
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+ },
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+ {
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+ "retrieved": "2024-11-10",
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+ "version": "4.1.184"
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  }
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  ],
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  "name": "Mass spectrometry ontology",
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  {
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  "retrieved": "2024-10-16",
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  "version": "2024-10-01"
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+ },
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+ {
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+ "retrieved": "2024-11-10",
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+ "version": "2024-11-05"
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  }
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  ],
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  "vtype": "date"
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  "retrieved": "2024-11-09",
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  "version": "November 7, 2024",
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  "date": "2024-11-07"
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+ },
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+ {
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+ "retrieved": "2024-11-10",
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+ "version": "November 8, 2024",
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+ "date": "2024-11-08"
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  }
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  ],
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  "name": "Online Mendelian Inheritance in Man",
@@ -9030,6 +9047,10 @@
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  {
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  "retrieved": "2024-10-27",
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  "version": "2024-10-03"
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+ },
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+ {
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+ "retrieved": "2024-11-10",
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+ "version": "2024-10-25"
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  }
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  ],
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  "vtype": "date"
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  {
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  "retrieved": "2024-11-09",
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  "version": "2024-11-09"
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+ },
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+ {
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+ "retrieved": "2024-11-10",
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+ "version": "2024-11-10"
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  }
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  ],
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  "name": "SwissLipids",
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  {
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  "retrieved": "2024-10-16",
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  "version": "2024-09-04"
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+ },
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+ {
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+ "retrieved": "2024-11-10",
15200
+ "version": "2024-11-02"
15172
15201
  }
15173
15202
  ],
15174
15203
  "name": "Unified Phenotype Ontology",
@@ -15533,6 +15562,10 @@
15533
15562
  {
15534
15563
  "retrieved": "2024-08-18",
15535
15564
  "version": "2024-08-14"
15565
+ },
15566
+ {
15567
+ "retrieved": "2024-11-10",
15568
+ "version": "2024-11-06"
15536
15569
  }
15537
15570
  ],
15538
15571
  "name": "Vertebrate Breed Ontology",
@@ -15632,6 +15665,10 @@
15632
15665
  {
15633
15666
  "retrieved": "2024-10-27",
15634
15667
  "version": "2024-10-16"
15668
+ },
15669
+ {
15670
+ "retrieved": "2024-11-10",
15671
+ "version": "2024-11-05"
15635
15672
  }
15636
15673
  ],
15637
15674
  "vtype": "date"
@@ -19272,6 +19309,10 @@
19272
19309
  {
19273
19310
  "retrieved": "2024-11-09",
19274
19311
  "version": "2024-11-07"
19312
+ },
19313
+ {
19314
+ "retrieved": "2024-11-10",
19315
+ "version": "2024-11-08"
19275
19316
  }
19276
19317
  ],
19277
19318
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.541"
12
+ VERSION = "0.5.542"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.541
3
+ Version: 0.5.542
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,5 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve DisGeNet
4
- - failed to resolve KEGG
5
- - failed to resolve Antibody Registry
File without changes
File without changes
File without changes