bioversions 0.5.533__tar.gz → 0.5.535__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.533/src/bioversions.egg-info → bioversions-0.5.535}/PKG-INFO +1 -1
  2. {bioversions-0.5.533 → bioversions-0.5.535}/docs/_data/versions.yml +11 -2
  3. bioversions-0.5.535/docs/failures.md +5 -0
  4. {bioversions-0.5.533 → bioversions-0.5.535}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.533 → bioversions-0.5.535}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.533 → bioversions-0.5.535}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.533 → bioversions-0.5.535}/setup.cfg +1 -1
  8. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/resources/versions.json +19 -2
  9. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/slm.py +4 -3
  10. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/version.py +1 -1
  11. {bioversions-0.5.533 → bioversions-0.5.535/src/bioversions.egg-info}/PKG-INFO +1 -1
  12. bioversions-0.5.533/docs/failures.md +0 -6
  13. {bioversions-0.5.533 → bioversions-0.5.535}/LICENSE +0 -0
  14. {bioversions-0.5.533 → bioversions-0.5.535}/MANIFEST.in +0 -0
  15. {bioversions-0.5.533 → bioversions-0.5.535}/README.md +0 -0
  16. {bioversions-0.5.533 → bioversions-0.5.535}/docs/_config.yml +0 -0
  17. {bioversions-0.5.533 → bioversions-0.5.535}/docs/_includes/footer.html +0 -0
  18. {bioversions-0.5.533 → bioversions-0.5.535}/docs/_includes/head.html +0 -0
  19. {bioversions-0.5.533 → bioversions-0.5.535}/docs/download.md +0 -0
  20. {bioversions-0.5.533 → bioversions-0.5.535}/docs/index.md +0 -0
  21. {bioversions-0.5.533 → bioversions-0.5.535}/docs/source/logo.png +0 -0
  22. {bioversions-0.5.533 → bioversions-0.5.535}/docs/summary.md +0 -0
  23. {bioversions-0.5.533 → bioversions-0.5.535}/pyproject.toml +0 -0
  24. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/__init__.py +0 -0
  25. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/__main__.py +0 -0
  26. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/charts.py +0 -0
  27. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/cli.py +0 -0
  28. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/py.typed +0 -0
  29. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/resources/__init__.py +0 -0
  30. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/resources/update.py +0 -0
  31. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/slack_client.py +0 -0
  32. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/__init__.py +0 -0
  33. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/antibodyregistry.py +0 -0
  34. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/bigg.py +0 -0
  35. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/biogrid.py +0 -0
  36. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/cellosaurus.py +0 -0
  37. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/chebi.py +0 -0
  38. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/chembl.py +0 -0
  39. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/chemidplus.py +0 -0
  40. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/civic.py +0 -0
  41. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/complexportal.py +0 -0
  42. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/daily.py +0 -0
  43. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/depmap.py +0 -0
  44. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/dgi.py +0 -0
  45. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/disgenet.py +0 -0
  46. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/drugbank.py +0 -0
  47. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/drugcentral.py +0 -0
  48. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/ensembl.py +0 -0
  49. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/expasy.py +0 -0
  50. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/flybase.py +0 -0
  51. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/guidetopharmacology.py +0 -0
  52. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/hgnc.py +0 -0
  53. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/homologene.py +0 -0
  54. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/icd10.py +0 -0
  55. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/icd11.py +0 -0
  56. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/icf.py +0 -0
  57. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/intact.py +0 -0
  58. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/interpro.py +0 -0
  59. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/itis.py +0 -0
  60. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/kegg.py +0 -0
  61. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/mesh.py +0 -0
  62. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/mgi.py +0 -0
  63. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/mirbase.py +0 -0
  64. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/moalmanac.py +0 -0
  65. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/msigdb.py +0 -0
  66. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/ncit.py +0 -0
  67. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/npass.py +0 -0
  68. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/obo.py +0 -0
  69. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/ols.py +0 -0
  70. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/omim.py +0 -0
  71. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/oncotree.py +0 -0
  72. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/pathbank.py +0 -0
  73. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/pathwaycommons.py +0 -0
  74. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/pfam.py +0 -0
  75. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/pombase.py +0 -0
  76. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/pr.py +0 -0
  77. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/pubchem.py +0 -0
  78. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/reactome.py +0 -0
  79. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/rfam.py +0 -0
  80. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/rgd.py +0 -0
  81. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/rhea.py +0 -0
  82. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/rxnorm.py +0 -0
  83. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/sgd.py +0 -0
  84. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.533 → bioversions-0.5.535}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.533 → bioversions-0.5.535}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.533
3
+ Version: 0.5.535
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-11-02'
4
- revision: 831
3
+ date: '2024-11-03'
4
+ revision: 832
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -2389,6 +2389,8 @@ database:
2389
2389
  version: '2024-10-07'
2390
2390
  - retrieved: '2024-10-27'
2391
2391
  version: '2024-10-14'
2392
+ - retrieved: '2024-11-03'
2393
+ version: '2024-10-28'
2392
2394
  vtype: date
2393
2395
  - name: Flora Phenotype Ontology
2394
2396
  prefix: flopo
@@ -3703,6 +3705,8 @@ database:
3703
3705
  version: '2.138'
3704
3706
  - retrieved: '2024-10-16'
3705
3707
  version: '2.141'
3708
+ - retrieved: '2024-11-03'
3709
+ version: '2.142'
3706
3710
  vtype: date
3707
3711
  - name: Medaka Developmental Stages
3708
3712
  prefix: olatdv
@@ -4893,6 +4897,9 @@ database:
4893
4897
  - date: '2024-10-31'
4894
4898
  retrieved: '2024-11-02'
4895
4899
  version: October 31, 2024
4900
+ - date: '2024-11-01'
4901
+ retrieved: '2024-11-03'
4902
+ version: November 1, 2024
4896
4903
  vtype: date
4897
4904
  - name: 'OntoAvida: ontology for Avida digital evolution platform'
4898
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  prefix: ontoavida
@@ -10434,6 +10441,8 @@ database:
10434
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  version: '2024-10-29'
10435
10442
  - retrieved: '2024-11-02'
10436
10443
  version: '2024-10-31'
10444
+ - retrieved: '2024-11-03'
10445
+ version: '2024-11-01'
10437
10446
  vtype: date
10438
10447
  - name: Zebrafish Phenotype Ontology
10439
10448
  prefix: zp
@@ -0,0 +1,5 @@
1
+ # Errors
2
+
3
+ - failed to resolve DisGeNet
4
+ - failed to resolve Antibody Registry
5
+ - failed to resolve SwissLipids
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-11-02T01:00:50.608878</dc:date>
9
+ <dc:date>2024-11-03T01:06:33.849410</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-11-02T01:00:50.553527</dc:date>
9
+ <dc:date>2024-11-03T01:06:33.797408</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
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  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-11-02T01:00:50.467510</dc:date>
9
+ <dc:date>2024-11-03T01:06:33.716453</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.533
3
+ version = 0.5.535
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 831,
4
- "date": "2024-11-02",
3
+ "revision": 832,
4
+ "date": "2024-11-03",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -4404,6 +4404,10 @@
4404
4404
  {
4405
4405
  "retrieved": "2024-10-27",
4406
4406
  "version": "2024-10-14"
4407
+ },
4408
+ {
4409
+ "retrieved": "2024-11-03",
4410
+ "version": "2024-10-28"
4407
4411
  }
4408
4412
  ],
4409
4413
  "vtype": "date"
@@ -6739,6 +6743,10 @@
6739
6743
  {
6740
6744
  "retrieved": "2024-10-16",
6741
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  "version": "2.141"
6746
+ },
6747
+ {
6748
+ "retrieved": "2024-11-03",
6749
+ "version": "2.142"
6742
6750
  }
6743
6751
  ],
6744
6752
  "vtype": "date"
@@ -8848,6 +8856,11 @@
8848
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  "retrieved": "2024-11-02",
8849
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  "version": "October 31, 2024",
8850
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  "date": "2024-10-31"
8859
+ },
8860
+ {
8861
+ "retrieved": "2024-11-03",
8862
+ "version": "November 1, 2024",
8863
+ "date": "2024-11-01"
8851
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  }
8852
8865
  ],
8853
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  "name": "Online Mendelian Inheritance in Man",
@@ -19157,6 +19170,10 @@
19157
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  {
19158
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  "retrieved": "2024-11-02",
19159
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  "version": "2024-10-31"
19173
+ },
19174
+ {
19175
+ "retrieved": "2024-11-03",
19176
+ "version": "2024-11-01"
19160
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  }
19161
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  ],
19162
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  "name": "Zebrafish Information Network",
@@ -1,5 +1,3 @@
1
- # -*- coding: utf-8 -*-
2
-
3
1
  """A getter for SwissLipids."""
4
2
 
5
3
  import datetime
@@ -12,6 +10,9 @@ __all__ = [
12
10
  "SwissLipidGetter",
13
11
  ]
14
12
 
13
+ # View docs at https://www.swisslipids.org/#/api
14
+ URL = "https://www.swisslipids.org/api/index.php/downloadData"
15
+
15
16
 
16
17
  class SwissLipidGetter(Getter):
17
18
  """A getter for SwissLipids."""
@@ -22,7 +23,7 @@ class SwissLipidGetter(Getter):
22
23
 
23
24
  def get(self):
24
25
  """Get the latest SwissLipids version number."""
25
- res = requests.get("https://www.swisslipids.org/api/downloadData").json()
26
+ res = requests.get(URL).json()
26
27
  record = next(record for record in res if record["file"] == "lipids.tsv")
27
28
  return datetime.datetime.strptime(record["date"], "%B %d %Y")
28
29
 
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.533"
12
+ VERSION = "0.5.535"
13
13
 
14
14
 
15
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.533
3
+ Version: 0.5.535
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,6 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve DisGeNet
4
- - failed to resolve Antibody Registry
5
- - issue parsing HGNC: HGNC hasn't posted new data for this month under version 2024-11-01
6
- - failed to resolve SwissLipids
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