bioversions 0.5.531__tar.gz → 0.5.533__tar.gz

{bioversions-0.5.531/src/bioversions.egg-info → bioversions-0.5.533}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.531
+Version: 0.5.533
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases

{bioversions-0.5.531 → bioversions-0.5.533}/docs/_data/versions.yml

@@ -1,7 +1,7 @@
 annotations:
   author: runner
-  date: '2024-11-01'
-  revision: 830
+  date: '2024-11-02'
+  revision: 831
 database:
 - name: A nomenclatural ontology for biological names
   prefix: nomen
@@ -371,6 +371,9 @@ database:
   - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.238
     retrieved: '2024-10-02'
     version: 4.4.238
+  - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.239
+    retrieved: '2024-11-02'
+    version: 4.4.239
   vtype: semver
 - name: Bioinformatics operations, data types, formats, identifiers and topics
   prefix: edam
@@ -976,6 +979,8 @@ database:
     version: 01-Sep-2024
   - retrieved: '2024-10-01'
     version: 01-Oct-2024
+  - retrieved: '2024-11-02'
+    version: 01-Nov-2024
   vtype: date
 - name: clinical LABoratory Ontology
   prefix: labo
@@ -1575,6 +1580,10 @@ database:
     homepage: https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-09-27
     retrieved: '2024-09-28'
     version: '2024-09-27'
+  - date: '2024-11-01'
+    homepage: https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-11-01
+    retrieved: '2024-11-02'
+    version: '2024-11-01'
   vtype: date
 - name: DisGeNet
   releases:
@@ -4881,6 +4890,9 @@ database:
   - date: '2024-10-30'
     retrieved: '2024-11-01'
     version: October 30, 2024
+  - date: '2024-10-31'
+    retrieved: '2024-11-02'
+    version: October 31, 2024
   vtype: date
 - name: 'OntoAvida: ontology for Avida digital evolution platform'
   prefix: ontoavida
@@ -5848,6 +5860,10 @@ database:
     homepage: https://www.pombase.org/data/releases/pombase-2024-10-01/
     retrieved: '2024-10-02'
     version: '2024-10-01'
+  - date: '2024-11-01'
+    homepage: https://www.pombase.org/data/releases/pombase-2024-11-01/
+    retrieved: '2024-11-02'
+    version: '2024-11-01'
   vtype: date
 - name: Population and Community Ontology
   prefix: pco
@@ -10416,6 +10432,8 @@ database:
     version: '2024-10-28'
   - retrieved: '2024-10-31'
     version: '2024-10-29'
+  - retrieved: '2024-11-02'
+    version: '2024-10-31'
   vtype: date
 - name: Zebrafish Phenotype Ontology
   prefix: zp

{bioversions-0.5.531 → bioversions-0.5.533}/docs/failures.md

@@ -3,5 +3,4 @@
 - failed to resolve DisGeNet
 - failed to resolve Antibody Registry
 - issue parsing HGNC: HGNC hasn't posted new data for this month under version 2024-11-01
-- failed to resolve SwissLipids
-- failed to resolve Zebrafish Information Network
+- failed to resolve SwissLipids

{bioversions-0.5.531 → bioversions-0.5.533}/docs/img/has_release_url.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-11-01T01:07:05.070236</dc:date>
+    <dc:date>2024-11-02T01:00:50.608878</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.531 → bioversions-0.5.533}/docs/img/version_date_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-11-01T01:07:05.016227</dc:date>
+    <dc:date>2024-11-02T01:00:50.553527</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.531 → bioversions-0.5.533}/docs/img/version_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-11-01T01:07:04.933404</dc:date>
+    <dc:date>2024-11-02T01:00:50.467510</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.531 → bioversions-0.5.533}/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = bioversions
-version = 0.5.531
+version = 0.5.533
 description = What's the current version for each biological database?
 long_description = file: README.md
 long_description_content_type = text/markdown

{bioversions-0.5.531 → bioversions-0.5.533}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 830,
-    "date": "2024-11-01",
+    "revision": 831,
+    "date": "2024-11-02",
     "author": "runner"
   },
   "database": [
@@ -676,6 +676,11 @@
           "retrieved": "2024-10-02",
           "version": "4.4.238",
           "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.238"
+        },
+        {
+          "retrieved": "2024-11-02",
+          "version": "4.4.239",
+          "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.239"
         }
       ],
       "vtype": "semver"
@@ -1788,6 +1793,10 @@
         {
           "retrieved": "2024-10-01",
           "version": "01-Oct-2024"
+        },
+        {
+          "retrieved": "2024-11-02",
+          "version": "01-Nov-2024"
         }
       ],
       "name": "CiVIC",
@@ -2852,6 +2861,12 @@
           "version": "2024-09-27",
           "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-09-27",
           "date": "2024-09-27"
+        },
+        {
+          "retrieved": "2024-11-02",
+          "version": "2024-11-01",
+          "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-11-01",
+          "date": "2024-11-01"
         }
       ],
       "vtype": "date"
@@ -8828,6 +8843,11 @@
           "retrieved": "2024-11-01",
           "version": "October 30, 2024",
           "date": "2024-10-30"
+        },
+        {
+          "retrieved": "2024-11-02",
+          "version": "October 31, 2024",
+          "date": "2024-10-31"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -10581,6 +10601,12 @@
           "version": "2024-10-01",
           "homepage": "https://www.pombase.org/data/releases/pombase-2024-10-01/",
           "date": "2024-10-01"
+        },
+        {
+          "retrieved": "2024-11-02",
+          "version": "2024-11-01",
+          "homepage": "https://www.pombase.org/data/releases/pombase-2024-11-01/",
+          "date": "2024-11-01"
         }
       ],
       "name": "PomBase",
@@ -19127,6 +19153,10 @@
         {
           "retrieved": "2024-10-31",
           "version": "2024-10-29"
+        },
+        {
+          "retrieved": "2024-11-02",
+          "version": "2024-10-31"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.5.531 → bioversions-0.5.533}/src/bioversions/sources/hgnc.py

@@ -1,5 +1,3 @@
-# -*- coding: utf-8 -*-
-
 """A getter for HGNC."""
 
 import datetime
@@ -32,11 +30,17 @@ class HGNCGetter(Getter):
     def get(self) -> str:
         """Get the latest HGNC version number."""
         today = datetime.date.today()
+        this_year = int(today.strftime("%Y"))
+        this_month = int(today.strftime("%m"))
         maybe = today.strftime("%Y-%m-01")
         res = requests.head(self.homepage_fmt.format(version=maybe))
         if res.status_code == 200:
             return maybe
-        raise ValueError(f"HGNC hasn't posted new data for this month under version {maybe}")
+        if this_month == 1:
+            maybe_last_month = f"{this_year - 1}-12-01"
+        else:
+            maybe_last_month = f"{this_year}-{this_month - 1}-01"
+        return maybe_last_month
 
 
 if __name__ == "__main__":

{bioversions-0.5.531 → bioversions-0.5.533}/src/bioversions/sources/kegg.py

@@ -4,9 +4,10 @@
 
 from typing import Mapping
 
-from bioversions.utils import Getter, VersionType, get_soup
 import bioregistry
 
+from bioversions.utils import Getter, VersionType, get_soup
+
 __all__ = [
     "KEGGGetter",
 ]

{bioversions-0.5.531 → bioversions-0.5.533}/src/bioversions/version.py

@@ -9,7 +9,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.5.531"
+VERSION = "0.5.533"
 
 
 def get_git_hash() -> str:

{bioversions-0.5.531 → bioversions-0.5.533/src/bioversions.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.531
+Version: 0.5.533
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases