bioversions 0.5.510__tar.gz → 0.5.511__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {bioversions-0.5.510/src/bioversions.egg-info → bioversions-0.5.511}/PKG-INFO +1 -1
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/_data/versions.yml +65 -2
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/failures.md +2 -2
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/img/has_release_url.svg +27 -27
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/img/version_date_types.svg +62 -62
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/img/version_types.svg +73 -73
- {bioversions-0.5.510 → bioversions-0.5.511}/setup.cfg +1 -1
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/resources/versions.json +127 -2
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/version.py +1 -1
- {bioversions-0.5.510 → bioversions-0.5.511/src/bioversions.egg-info}/PKG-INFO +1 -1
- {bioversions-0.5.510 → bioversions-0.5.511}/LICENSE +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/MANIFEST.in +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/README.md +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/_config.yml +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/_includes/footer.html +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/_includes/head.html +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/download.md +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/index.md +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/source/logo.png +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/docs/summary.md +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/pyproject.toml +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/__init__.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/__main__.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/charts.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/cli.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/py.typed +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/resources/__init__.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/resources/update.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/slack_client.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/__init__.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/antibodyregistry.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/bigg.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/biogrid.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/cellosaurus.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/chebi.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/chembl.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/chemidplus.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/civic.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/complexportal.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/daily.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/depmap.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/dgi.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/disgenet.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/drugbank.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/drugcentral.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/ensembl.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/expasy.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/flybase.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/guidetopharmacology.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/hgnc.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/homologene.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/icd10.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/icd11.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/icf.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/intact.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/interpro.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/itis.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/kegg.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/mesh.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/mgi.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/mirbase.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/moalmanac.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/msigdb.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/ncit.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/npass.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/obo.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/ols.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/omim.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/oncotree.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pathbank.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pathwaycommons.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pfam.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pombase.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pr.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pubchem.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/reactome.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rfam.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rgd.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rhea.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rxnorm.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/sgd.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/slm.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/stringdb.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/umls.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/uniprot.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/unversioned.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/wikipathways.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/zfin.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/templates/base.html +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/templates/home.html +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/twitter_client.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/utils.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/wsgi.py +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/SOURCES.txt +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/dependency_links.txt +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/entry_points.txt +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/not-zip-safe +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/requires.txt +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/top_level.txt +0 -0
- {bioversions-0.5.510 → bioversions-0.5.511}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: bioversions
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Version: 0.5.
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Version: 0.5.511
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Summary: What's the current version for each biological database?
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Home-page: https://github.com/biopragmatics/bioversions
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Download-URL: https://github.com/biopragmatics/bioversions/releases
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annotations:
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author: runner
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date: '2024-10-
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revision:
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date: '2024-10-13'
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revision: 810
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database:
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- name: A nomenclatural ontology for biological names
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prefix: nomen
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version: 2024/03
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version: 2024/09
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vtype: date
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- name: Alzheimer's Disease Ontology
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prefix: ado
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version: '2024-04-26'
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- name: Bambara groundnut ontology
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prefix: co_366
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version: '2024-01-16'
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- name: C. elegans Gross Anatomy Ontology
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version: '2024-04-01'
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- retrieved: '2024-08-11'
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version: '2024-07-01'
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version: '2024-09-24'
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- name: C. elegans phenotype
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- name: Cardiovascular Disease Ontology
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- name: Cell Type Ontology
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retrieved: '2024-10-13'
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4735
|
+
version: October 11, 2024
|
4695
4736
|
vtype: date
|
4696
4737
|
- name: 'OntoAvida: ontology for Avida digital evolution platform'
|
4697
4738
|
prefix: ontoavida
|
@@ -4924,6 +4965,8 @@ database:
|
|
4924
4965
|
version: '2024-05-13'
|
4925
4966
|
- retrieved: '2024-08-11'
|
4926
4967
|
version: '2024-06-27'
|
4968
|
+
- retrieved: '2024-10-13'
|
4969
|
+
version: '2024-09-12'
|
4927
4970
|
vtype: date
|
4928
4971
|
- name: Ontology of Genetic Susceptibility Factor
|
4929
4972
|
prefix: ogsf
|
@@ -5030,6 +5073,8 @@ database:
|
|
5030
5073
|
version: '2023-03-30'
|
5031
5074
|
- retrieved: '2024-03-25'
|
5032
5075
|
version: '2024-01-25'
|
5076
|
+
- retrieved: '2024-10-13'
|
5077
|
+
version: '2024-09-30'
|
5033
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vtype: date
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5034
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|
- name: Ontology of Precision Medicine and Investigation
|
5035
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prefix: opmi
|
@@ -5379,6 +5424,8 @@ database:
|
|
5379
5424
|
version: '2023-05-18'
|
5380
5425
|
- retrieved: '2024-04-06'
|
5381
5426
|
version: '2024-03-28'
|
5427
|
+
- retrieved: '2024-10-13'
|
5428
|
+
version: '2024-09-04'
|
5382
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|
vtype: date
|
5383
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- name: PHI-base Ontology
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5384
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prefix: phi
|
@@ -6038,6 +6085,8 @@ database:
|
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version: '6.229'
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6039
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- retrieved: '2024-09-01'
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6040
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|
version: '6.230'
|
6088
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+
- retrieved: '2024-10-13'
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6089
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+
version: '6.235'
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vtype: date
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- name: Reactome
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6043
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prefix: reactome
|
@@ -7693,6 +7742,8 @@ database:
|
|
7693
7742
|
version: '2024-07-03'
|
7694
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|
- retrieved: '2024-08-18'
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7695
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|
version: '2024-08-06'
|
7745
|
+
- retrieved: '2024-10-13'
|
7746
|
+
version: '2024-09-17'
|
7696
7747
|
vtype: date
|
7697
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- name: The COVID-19 Infectious Disease Ontology
|
7698
7749
|
prefix: idocovid19
|
@@ -7731,6 +7782,8 @@ database:
|
|
7731
7782
|
version: '2024-08-05'
|
7732
7783
|
- retrieved: '2024-08-18'
|
7733
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|
version: '2024-08-07'
|
7785
|
+
- retrieved: '2024-10-13'
|
7786
|
+
version: '2024-09-04'
|
7734
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|
vtype: date
|
7735
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|
- name: The Echinoderm Anatomy and Development Ontology
|
7736
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|
prefix: ecao
|
@@ -7886,6 +7939,8 @@ database:
|
|
7886
7939
|
version: '2024-05-13'
|
7887
7940
|
- retrieved: '2024-08-11'
|
7888
7941
|
version: '2024-08-07'
|
7942
|
+
- retrieved: '2024-10-13'
|
7943
|
+
version: '2024-09-03'
|
7889
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|
vtype: date
|
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|
- name: UBERON
|
7891
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prefix: uberon
|
@@ -7918,6 +7973,8 @@ database:
|
|
7918
7973
|
version: 31-10-2017
|
7919
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|
- retrieved: '2021-06-14'
|
7920
7975
|
version: '2017-10-31'
|
7976
|
+
- retrieved: '2024-10-13'
|
7977
|
+
version: '2024-09-04'
|
7921
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|
vtype: date
|
7922
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|
- name: Unified phenotype ontology (uPheno)
|
7923
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prefix: upheno
|
@@ -8085,6 +8142,8 @@ database:
|
|
8085
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|
version: '2024-07-13'
|
8086
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|
- retrieved: '2024-08-17'
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8087
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|
version: '2024-08-11'
|
8145
|
+
- retrieved: '2024-10-13'
|
8146
|
+
version: '2024-09-22'
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8088
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vtype: semver
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- name: Variation Ontology
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prefix: vario
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@@ -8159,6 +8218,8 @@ database:
|
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8159
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version: '2024-07-22'
|
8160
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|
- retrieved: '2024-08-18'
|
8161
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|
version: '2024-08-13'
|
8221
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+
- retrieved: '2024-10-13'
|
8222
|
+
version: '2024-10-02'
|
8162
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vtype: date
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8163
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|
- name: VEuPathDB Ontology
|
8164
8225
|
prefix: eupath
|
@@ -8380,6 +8441,8 @@ database:
|
|
8380
8441
|
version: '2022-08-29'
|
8381
8442
|
- retrieved: '2024-09-01'
|
8382
8443
|
version: '2024-08-23'
|
8444
|
+
- retrieved: '2024-10-13'
|
8445
|
+
version: '2024-09-03'
|
8383
8446
|
vtype: date
|
8384
8447
|
- name: Xenopus Phenotype Ontology
|
8385
8448
|
prefix: xpo
|
@@ -1,7 +1,7 @@
|
|
1
1
|
# Errors
|
2
2
|
|
3
3
|
- failed to resolve DisGeNet
|
4
|
-
- failed to resolve StringDB
|
5
4
|
- failed to resolve Antibody Registry
|
6
5
|
- issue parsing HGNC: max() arg is an empty sequence
|
7
|
-
- failed to resolve SwissLipids
|
6
|
+
- failed to resolve SwissLipids
|
7
|
+
- failed to resolve Zebrafish Information Network
|
@@ -6,7 +6,7 @@
|
|
6
6
|
<rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
|
7
7
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<cc:Work>
|
8
8
|
<dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
|
9
|
-
<dc:date>2024-10-
|
9
|
+
<dc:date>2024-10-13T01:05:56.343932</dc:date>
|
10
10
|
<dc:format>image/svg+xml</dc:format>
|
11
11
|
<dc:creator>
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12
12
|
<cc:Agent>
|
@@ -32,38 +32,38 @@ z
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<g id="matplotlib.axis_1"/>
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<g id="patch_2">
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<path d="M 333.
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C 294.
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C 253.
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C 210.
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C 168.
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C 133.
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C 110.
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43
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C 101.
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44
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C 108.
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45
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C 129.
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46
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C 162.
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47
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C 203.
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48
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C 246.
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49
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-
C
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C 321.
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C 343.
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L 226.
|
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+
<path d="M 333.314223 111.249773
|
36
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+
C 326.019608 98.615129 316.545422 87.371123 305.33107 78.039244
|
37
|
+
C 294.116718 68.707365 281.338293 61.434145 267.588447 56.556912
|
38
|
+
C 253.838602 51.679678 239.333242 49.275015 224.745114 49.454447
|
39
|
+
C 210.156987 49.63388 195.715161 52.394592 182.089436 57.608544
|
40
|
+
C 168.463712 62.822495 155.868046 70.407814 144.886614 80.0127
|
41
|
+
C 133.905183 89.617585 124.710423 101.091218 117.728777 113.901459
|
42
|
+
C 110.747132 126.711701 106.088232 140.6574 103.968151 155.091766
|
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+
C 101.848071 169.526132 102.300102 184.22251 105.303279 198.499295
|
44
|
+
C 108.306456 212.77608 113.813621 226.409091 121.569358 238.766041
|
45
|
+
C 129.325095 251.122991 139.207619 262.009844 150.758587 270.921679
|
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|
+
C 162.309555 279.833514 175.347588 286.630393 189.267994 290.997081
|
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|
+
C 203.1884 295.363769 217.772593 297.2317 232.344172 296.514239
|
48
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+
C 246.915751 295.796779 261.245905 292.505193 274.670015 286.792144
|
49
|
+
C 288.094125 281.079095 300.401399 273.03429 311.021036 263.030842
|
50
|
+
C 321.640672 253.027393 330.405917 241.22238 336.910246 228.163308
|
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C 343.414575 215.104236 347.555854 200.996164 349.142014 186.493414
|
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L 226.265386 173.054449
|
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" style="fill: #4c72b0; stroke: #ffffff; stroke-linejoin: miter"/>
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<path d="M 351.561254 185.984517
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C 352.980971 173.003611 352.334766 159.879324 349.64673 147.100672
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C 346.958687 134.322019 342.262623 122.0497 335.733463 110.740868
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L 228.684628 172.545551
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<!-- No Stable Version URL -->
|
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<g style="fill: #262626" transform="translate(-29.
|
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+
<g style="fill: #262626" transform="translate(-29.358708 204.079116) scale(0.11 -0.11)">
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<g style="fill: #262626" transform="translate(140.
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+
<g style="fill: #262626" transform="translate(140.352187 191.63262) scale(0.12 -0.12)">
|
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|
<defs>
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L 703 672
|
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</g>
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<g id="text_3">
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|
<!-- Has Stable Version URL -->
|
524
|
-
<g style="fill: #262626" transform="translate(361.
|
524
|
+
<g style="fill: #262626" transform="translate(361.742924 147.591433) scale(0.11 -0.11)">
|
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|
<defs>
|
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|
<path id="DejaVuSans-48" d="M 628 4666
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L 1259 4666
|
@@ -565,7 +565,7 @@ z
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|
</g>
|
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<g id="text_4">
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|
<!-- 10% -->
|
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|
-
<g style="fill: #262626" transform="translate(287.
|
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|
+
<g style="fill: #262626" transform="translate(287.925943 160.589839) scale(0.12 -0.12)">
|
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|
<defs>
|
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|
<path id="DejaVuSans-31" d="M 794 531
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L 1825 531
|
@@ -6,7 +6,7 @@
|
|
6
6
|
<rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
|
7
7
|
<cc:Work>
|
8
8
|
<dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
|
9
|
-
<dc:date>2024-10-
|
9
|
+
<dc:date>2024-10-13T01:05:56.290388</dc:date>
|
10
10
|
<dc:format>image/svg+xml</dc:format>
|
11
11
|
<dc:creator>
|
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|
<cc:Agent>
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@@ -32,86 +32,86 @@ z
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<path d="M 339.
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|
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C 356.
|
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L 229.
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C 297.49777 63.970945 283.619979 56.432769 268.726536 51.589748
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|
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C 253.833094 46.746727 238.175861 44.68076 222.535956 45.494915
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|
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C 206.896051 46.309071 191.537958 49.989581 177.227872 56.352829
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C 162.917787 62.716077 149.897704 71.654456 138.817179 82.722041
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C 127.736654 93.789626 118.783068 106.799256 112.403103 121.101897
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C 224.482699 301.93569 240.270776 301.543494 255.594176 298.308854
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L 229.183496 173.194009
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