bioversions 0.5.510__tar.gz → 0.5.511__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.510/src/bioversions.egg-info → bioversions-0.5.511}/PKG-INFO +1 -1
  2. {bioversions-0.5.510 → bioversions-0.5.511}/docs/_data/versions.yml +65 -2
  3. {bioversions-0.5.510 → bioversions-0.5.511}/docs/failures.md +2 -2
  4. {bioversions-0.5.510 → bioversions-0.5.511}/docs/img/has_release_url.svg +27 -27
  5. {bioversions-0.5.510 → bioversions-0.5.511}/docs/img/version_date_types.svg +62 -62
  6. {bioversions-0.5.510 → bioversions-0.5.511}/docs/img/version_types.svg +73 -73
  7. {bioversions-0.5.510 → bioversions-0.5.511}/setup.cfg +1 -1
  8. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/resources/versions.json +127 -2
  9. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.510 → bioversions-0.5.511/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.510 → bioversions-0.5.511}/LICENSE +0 -0
  12. {bioversions-0.5.510 → bioversions-0.5.511}/MANIFEST.in +0 -0
  13. {bioversions-0.5.510 → bioversions-0.5.511}/README.md +0 -0
  14. {bioversions-0.5.510 → bioversions-0.5.511}/docs/_config.yml +0 -0
  15. {bioversions-0.5.510 → bioversions-0.5.511}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.510 → bioversions-0.5.511}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.510 → bioversions-0.5.511}/docs/download.md +0 -0
  18. {bioversions-0.5.510 → bioversions-0.5.511}/docs/index.md +0 -0
  19. {bioversions-0.5.510 → bioversions-0.5.511}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.510 → bioversions-0.5.511}/docs/summary.md +0 -0
  21. {bioversions-0.5.510 → bioversions-0.5.511}/pyproject.toml +0 -0
  22. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/civic.py +0 -0
  39. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.510 → bioversions-0.5.511}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.510 → bioversions-0.5.511}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.510
3
+ Version: 0.5.511
4
4
  Summary: What's the current version for each biological database?
5
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-10-12'
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- revision: 809
3
+ date: '2024-10-13'
4
+ revision: 810
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -42,6 +42,8 @@ database:
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  version: 2024/03
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  - retrieved: '2024-08-11'
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  version: 2024/06
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+ - retrieved: '2024-10-13'
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+ version: 2024/09
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  vtype: date
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  - name: Alzheimer's Disease Ontology
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  prefix: ado
@@ -151,6 +153,8 @@ database:
151
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  version: '2024-04-26'
152
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  - retrieved: '2024-08-11'
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  version: '2024-08-03'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-18'
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  vtype: date
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  - name: Bambara groundnut ontology
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  prefix: co_366
@@ -489,6 +493,8 @@ database:
489
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  version: '2024-01-16'
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  - retrieved: '2024-04-13'
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  version: '2024-04-09'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-26'
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  vtype: date
493
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  - name: C. elegans Gross Anatomy Ontology
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  prefix: wbbt
@@ -515,6 +521,8 @@ database:
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  version: '2024-04-01'
516
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  - retrieved: '2024-08-11'
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  version: '2024-07-01'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-24'
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  vtype: date
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  - name: C. elegans phenotype
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  prefix: wbphenotype
@@ -557,6 +565,8 @@ database:
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  version: '2024-04-09'
558
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  - retrieved: '2024-06-09'
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  version: '2024-06-05'
568
+ - retrieved: '2024-10-13'
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+ version: '2024-09-26'
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  vtype: date
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  - name: Cardiovascular Disease Ontology
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  prefix: cvdo
@@ -663,6 +673,8 @@ database:
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  version: '2024-07-10'
664
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  - retrieved: '2024-09-01'
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  version: '2024-08-16'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-26'
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  vtype: date
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  - name: Cell Type Ontology
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  prefix: cl
@@ -992,6 +1004,8 @@ database:
992
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  version: '2.222'
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  - retrieved: '2024-09-01'
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  version: '2.224'
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+ - retrieved: '2024-10-13'
1008
+ version: '2.227'
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  vtype: date
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  - name: Clinical Trials Ontology
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  prefix: cto
@@ -1193,6 +1207,8 @@ database:
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  version: '2023-05-12'
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  - retrieved: '2024-03-25'
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  version: '2023-11-16'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-20'
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  vtype: date
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  - name: Coronavirus Infectious Disease Ontology
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  prefix: cido
@@ -1318,6 +1334,8 @@ database:
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  version: 2024b_20240331
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  - retrieved: '2024-06-23'
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  version: 2024c_20240617
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+ - retrieved: '2024-10-13'
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+ version: 2024d_20240922
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  vtype: other
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  - name: Dicty Phenotype Ontology (DDPHENO)
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  prefix: ddpheno
@@ -1755,6 +1773,8 @@ database:
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  releases:
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  - retrieved: '2021-02-02'
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  version: 17-07-2019
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+ - retrieved: '2024-10-13'
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+ version: 1.25-20240924T0027Z-unstable(1.26)
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  vtype: date
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  - name: Emotion Ontology
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  prefix: mfoem
@@ -2062,6 +2082,8 @@ database:
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  version: '4.178'
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  - retrieved: '2024-09-01'
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  version: '4.179'
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+ - retrieved: '2024-10-13'
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+ version: '4.184'
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  vtype: date
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  - name: Experimental Factor Ontology
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  prefix: efo
@@ -2138,6 +2160,8 @@ database:
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  version: 3.68.0
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  - retrieved: '2024-08-18'
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  version: 3.69.0
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+ - retrieved: '2024-10-13'
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+ version: 3.70.0
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  vtype: semver
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  - name: Exposure ontology
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  prefix: exo
@@ -2284,6 +2308,8 @@ database:
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  version: '2024-08-01'
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  - retrieved: '2024-09-08'
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  version: '2024-09-02'
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+ - retrieved: '2024-10-13'
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+ version: '2024-10-07'
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  vtype: date
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  - name: Flora Phenotype Ontology
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  prefix: flopo
@@ -2697,6 +2723,8 @@ database:
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  version: '2024-04-17'
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  - retrieved: '2024-05-26'
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  version: '2024-05-21'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-26'
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  vtype: semver
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  - name: Glycan Naming and Subsumption Ontology (GNOme)
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  prefix: gno
@@ -3468,6 +3496,8 @@ database:
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  version: '2024-07-02'
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  - retrieved: '2024-08-17'
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  version: '2024-08-08'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-18'
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  vtype: date
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  - name: Mass Spectrometry Controlled Vocabulary
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  prefix: ms
@@ -3508,6 +3538,8 @@ database:
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  version: 4.1.172
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  - retrieved: '2024-09-08'
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  version: 4.1.173
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+ - retrieved: '2024-10-13'
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+ version: 4.1.179
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  vtype: date
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  - name: Mathematical modeling ontology
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  prefix: mamo
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  version: '2.136'
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  - retrieved: '2024-09-01'
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  version: '2.138'
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+ - retrieved: '2024-10-13'
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+ version: '2.141'
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  vtype: date
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  - name: Medaka Developmental Stages
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  prefix: olatdv
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  version: '2024-06-04'
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  - retrieved: '2024-08-11'
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  version: '2024-08-06'
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+ - retrieved: '2024-10-13'
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+ version: '2024-10-01'
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  vtype: date
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  - name: MOP
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  prefix: mop
@@ -4231,6 +4267,8 @@ database:
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  releases:
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  - retrieved: '2023-05-11'
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  version: '2022-10-05'
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+ - retrieved: '2024-10-13'
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+ version: '2024-08-27'
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  vtype: date
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  - name: NMR-instrument specific component of metabolomics investigations
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  prefix: nmr
@@ -4692,6 +4730,9 @@ database:
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  - date: '2024-10-10'
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  retrieved: '2024-10-12'
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  version: October 10, 2024
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+ - date: '2024-10-11'
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+ retrieved: '2024-10-13'
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+ version: October 11, 2024
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  vtype: date
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
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  version: '2024-05-13'
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  - retrieved: '2024-08-11'
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  version: '2024-06-27'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-12'
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  vtype: date
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  - name: Ontology of Genetic Susceptibility Factor
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  prefix: ogsf
@@ -5030,6 +5073,8 @@ database:
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  version: '2023-03-30'
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  - retrieved: '2024-03-25'
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  version: '2024-01-25'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-30'
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  vtype: date
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  - name: Ontology of Precision Medicine and Investigation
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  prefix: opmi
@@ -5379,6 +5424,8 @@ database:
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  version: '2023-05-18'
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  - retrieved: '2024-04-06'
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  version: '2024-03-28'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-04'
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  vtype: date
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  - name: PHI-base Ontology
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  prefix: phi
@@ -6038,6 +6085,8 @@ database:
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  version: '6.229'
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  - retrieved: '2024-09-01'
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  version: '6.230'
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+ - retrieved: '2024-10-13'
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+ version: '6.235'
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  vtype: date
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  - name: Reactome
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  prefix: reactome
@@ -7693,6 +7742,8 @@ database:
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  version: '2024-07-03'
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  - retrieved: '2024-08-18'
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  version: '2024-08-06'
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+ - retrieved: '2024-10-13'
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+ version: '2024-09-17'
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  vtype: date
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  - name: The COVID-19 Infectious Disease Ontology
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  prefix: idocovid19
@@ -7731,6 +7782,8 @@ database:
7731
7782
  version: '2024-08-05'
7732
7783
  - retrieved: '2024-08-18'
7733
7784
  version: '2024-08-07'
7785
+ - retrieved: '2024-10-13'
7786
+ version: '2024-09-04'
7734
7787
  vtype: date
7735
7788
  - name: The Echinoderm Anatomy and Development Ontology
7736
7789
  prefix: ecao
@@ -7886,6 +7939,8 @@ database:
7886
7939
  version: '2024-05-13'
7887
7940
  - retrieved: '2024-08-11'
7888
7941
  version: '2024-08-07'
7942
+ - retrieved: '2024-10-13'
7943
+ version: '2024-09-03'
7889
7944
  vtype: date
7890
7945
  - name: UBERON
7891
7946
  prefix: uberon
@@ -7918,6 +7973,8 @@ database:
7918
7973
  version: 31-10-2017
7919
7974
  - retrieved: '2021-06-14'
7920
7975
  version: '2017-10-31'
7976
+ - retrieved: '2024-10-13'
7977
+ version: '2024-09-04'
7921
7978
  vtype: date
7922
7979
  - name: Unified phenotype ontology (uPheno)
7923
7980
  prefix: upheno
@@ -8085,6 +8142,8 @@ database:
8085
8142
  version: '2024-07-13'
8086
8143
  - retrieved: '2024-08-17'
8087
8144
  version: '2024-08-11'
8145
+ - retrieved: '2024-10-13'
8146
+ version: '2024-09-22'
8088
8147
  vtype: semver
8089
8148
  - name: Variation Ontology
8090
8149
  prefix: vario
@@ -8159,6 +8218,8 @@ database:
8159
8218
  version: '2024-07-22'
8160
8219
  - retrieved: '2024-08-18'
8161
8220
  version: '2024-08-13'
8221
+ - retrieved: '2024-10-13'
8222
+ version: '2024-10-02'
8162
8223
  vtype: date
8163
8224
  - name: VEuPathDB Ontology
8164
8225
  prefix: eupath
@@ -8380,6 +8441,8 @@ database:
8380
8441
  version: '2022-08-29'
8381
8442
  - retrieved: '2024-09-01'
8382
8443
  version: '2024-08-23'
8444
+ - retrieved: '2024-10-13'
8445
+ version: '2024-09-03'
8383
8446
  vtype: date
8384
8447
  - name: Xenopus Phenotype Ontology
8385
8448
  prefix: xpo
@@ -1,7 +1,7 @@
1
1
  # Errors
2
2
 
3
3
  - failed to resolve DisGeNet
4
- - failed to resolve StringDB
5
4
  - failed to resolve Antibody Registry
6
5
  - issue parsing HGNC: max() arg is an empty sequence
7
- - failed to resolve SwissLipids
6
+ - failed to resolve SwissLipids
7
+ - failed to resolve Zebrafish Information Network
@@ -6,7 +6,7 @@
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