bioversions 0.5.501__tar.gz → 0.5.502__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.501/src/bioversions.egg-info → bioversions-0.5.502}/PKG-INFO +1 -1
  2. {bioversions-0.5.501 → bioversions-0.5.502}/docs/_data/versions.yml +25 -2
  3. bioversions-0.5.502/docs/failures.md +6 -0
  4. {bioversions-0.5.501 → bioversions-0.5.502}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.501 → bioversions-0.5.502}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.501 → bioversions-0.5.502}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.501 → bioversions-0.5.502}/setup.cfg +1 -1
  8. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/resources/versions.json +39 -2
  9. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.501 → bioversions-0.5.502/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.501/docs/failures.md +0 -7
  12. {bioversions-0.5.501 → bioversions-0.5.502}/LICENSE +0 -0
  13. {bioversions-0.5.501 → bioversions-0.5.502}/MANIFEST.in +0 -0
  14. {bioversions-0.5.501 → bioversions-0.5.502}/README.md +0 -0
  15. {bioversions-0.5.501 → bioversions-0.5.502}/docs/_config.yml +0 -0
  16. {bioversions-0.5.501 → bioversions-0.5.502}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.501 → bioversions-0.5.502}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.501 → bioversions-0.5.502}/docs/download.md +0 -0
  19. {bioversions-0.5.501 → bioversions-0.5.502}/docs/index.md +0 -0
  20. {bioversions-0.5.501 → bioversions-0.5.502}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.501 → bioversions-0.5.502}/docs/summary.md +0 -0
  22. {bioversions-0.5.501 → bioversions-0.5.502}/pyproject.toml +0 -0
  23. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.501 → bioversions-0.5.502}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.501 → bioversions-0.5.502}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.501
3
+ Version: 0.5.502
4
4
  Summary: What's the current version for each biological database?
5
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-10-03'
4
- revision: 800
3
+ date: '2024-10-04'
4
+ revision: 801
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  database:
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -2768,6 +2768,10 @@ database:
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  homepage: https://www.guidetopharmacology.org/DATA/public_iuphardb_v2024.2.zip
2769
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  retrieved: '2024-06-27'
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  version: '2024.2'
2771
+ - date: '2024-10-03'
2772
+ homepage: https://www.guidetopharmacology.org/DATA/public_iuphardb_v2024.3.zip
2773
+ retrieved: '2024-10-04'
2774
+ version: '2024.3'
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  vtype: year_minor
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  - name: Health Surveillance Ontology
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  prefix: hso
@@ -3246,6 +3250,10 @@ database:
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  homepage: ftp://ftp.ebi.ac.uk/pub/databases/interpro/101.0/
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  retrieved: '2024-07-30'
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  version: '101.0'
3253
+ - date: '2024-10-03'
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+ homepage: ftp://ftp.ebi.ac.uk/pub/databases/interpro/102.0/
3255
+ retrieved: '2024-10-04'
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+ version: '102.0'
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  vtype: semver_minor
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  - name: ITIS
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  prefix: itis
@@ -3304,6 +3312,8 @@ database:
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  version: 26-Jun-2024
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  - retrieved: '2024-08-15'
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  version: ''
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+ - retrieved: '2024-10-04'
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+ version: 31-Aug-2023
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  vtype: date
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  - name: KEGG
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  prefix: kegg.pathway
@@ -3841,6 +3851,10 @@ database:
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  homepage: https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-09-05
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  retrieved: '2024-09-06'
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  version: '2024-09-05'
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+ - date: '2024-10-03'
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+ homepage: https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-10-03
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+ retrieved: '2024-10-04'
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+ version: '2024-10-03'
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  vtype: date
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  - name: Molecular Process Ontology
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  prefix: mop
@@ -4655,6 +4669,9 @@ database:
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  - date: '2024-10-01'
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  retrieved: '2024-10-03'
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  version: October 1, 2024
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+ - date: '2024-10-02'
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+ retrieved: '2024-10-04'
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+ version: October 2, 2024
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  vtype: date
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
@@ -7974,6 +7991,10 @@ database:
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  homepage: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_04/
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  retrieved: '2024-07-26'
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  version: '2024_04'
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+ - date: '2024-05-01'
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+ homepage: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_05/
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+ retrieved: '2024-10-04'
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+ version: '2024_05'
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  vtype: month
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  - name: Unit Ontology
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  prefix: uo
@@ -10039,6 +10060,8 @@ database:
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  version: '2024-09-29'
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  - retrieved: '2024-10-02'
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  version: '2024-09-30'
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+ - retrieved: '2024-10-04'
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+ version: '2024-10-02'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -0,0 +1,6 @@
1
+ # Errors
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+
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+ - failed to resolve DisGeNet
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+ - failed to resolve Antibody Registry
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+ - failed to resolve National Cancer Institute Thesaurus
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+ - failed to resolve SwissLipids
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-10-03T01:02:12.293993</dc:date>
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+ <dc:date>2024-10-04T01:01:44.184645</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-10-03T01:02:12.238925</dc:date>
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+ <dc:date>2024-10-04T01:01:44.131222</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-10-03T01:02:12.156642</dc:date>
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+ <dc:date>2024-10-04T01:01:44.048206</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
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  [metadata]
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  name = bioversions
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- version = 0.5.501
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+ version = 0.5.502
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  description = What's the current version for each biological database?
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  long_description = file: README.md
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
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  {
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  "annotations": {
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- "revision": 800,
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- "date": "2024-10-03",
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+ "revision": 801,
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+ "date": "2024-10-04",
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  "author": "runner"
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  },
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  "database": [
@@ -5045,6 +5045,12 @@
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  "version": "2024.2",
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  "homepage": "https://www.guidetopharmacology.org/DATA/public_iuphardb_v2024.2.zip",
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  "date": "2024-06-26"
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+ },
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+ {
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+ "retrieved": "2024-10-04",
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+ "version": "2024.3",
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+ "homepage": "https://www.guidetopharmacology.org/DATA/public_iuphardb_v2024.3.zip",
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+ "date": "2024-10-03"
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  }
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  ],
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  "name": "Guide to Pharmacology",
@@ -5874,6 +5880,12 @@
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  "version": "101.0",
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  "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/101.0/",
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  "date": "2024-07-25"
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+ },
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+ {
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+ "retrieved": "2024-10-04",
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+ "version": "102.0",
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+ "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/102.0/",
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+ "date": "2024-10-03"
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  }
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  ],
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  "vtype": "semver_minor"
@@ -5987,6 +5999,10 @@
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  {
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  "retrieved": "2024-08-15",
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  "version": ""
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+ },
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+ {
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+ "retrieved": "2024-10-04",
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+ "version": "31-Aug-2023"
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  }
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  ],
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  "name": "ITIS",
@@ -6969,6 +6985,12 @@
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  "version": "2024-09-05",
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  "homepage": "https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-09-05",
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  "date": "2024-09-05"
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+ },
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+ {
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+ "retrieved": "2024-10-04",
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+ "version": "2024-10-03",
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+ "homepage": "https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-10-03",
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+ "date": "2024-10-03"
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  }
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  ],
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  "name": "Molecular Oncology Almanac",
@@ -8408,6 +8430,11 @@
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  "retrieved": "2024-10-03",
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  "version": "October 1, 2024",
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  "date": "2024-10-01"
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+ },
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+ {
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+ "retrieved": "2024-10-04",
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+ "version": "October 2, 2024",
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+ "date": "2024-10-02"
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  }
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  ],
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  "name": "Online Mendelian Inheritance in Man",
@@ -14659,6 +14686,12 @@
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  "version": "2024_04",
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  "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_04/",
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  "date": "2024-04-01"
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+ },
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+ {
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+ "retrieved": "2024-10-04",
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+ "version": "2024_05",
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+ "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_05/",
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+ "date": "2024-05-01"
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  }
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  ],
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  "vtype": "month"
@@ -18412,6 +18445,10 @@
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  {
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  "retrieved": "2024-10-02",
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  "version": "2024-09-30"
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+ },
18449
+ {
18450
+ "retrieved": "2024-10-04",
18451
+ "version": "2024-10-02"
18415
18452
  }
18416
18453
  ],
18417
18454
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.501"
12
+ VERSION = "0.5.502"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.501
3
+ Version: 0.5.502
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve DisGeNet
4
- - failed to resolve Antibody Registry
5
- - failed to resolve PathBank
6
- - failed to resolve SwissLipids
7
- - failed to resolve Zebrafish Information Network
File without changes
File without changes
File without changes