bioversions 0.5.487__tar.gz → 0.5.489__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.487/src/bioversions.egg-info → bioversions-0.5.489}/PKG-INFO +1 -1
  2. {bioversions-0.5.487 → bioversions-0.5.489}/docs/_data/versions.yml +23 -2
  3. bioversions-0.5.489/docs/failures.md +9 -0
  4. {bioversions-0.5.487 → bioversions-0.5.489}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.487 → bioversions-0.5.489}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.487 → bioversions-0.5.489}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.487 → bioversions-0.5.489}/setup.cfg +1 -1
  8. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/resources/versions.json +37 -2
  9. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.487 → bioversions-0.5.489/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.487/docs/failures.md +0 -6
  12. {bioversions-0.5.487 → bioversions-0.5.489}/LICENSE +0 -0
  13. {bioversions-0.5.487 → bioversions-0.5.489}/MANIFEST.in +0 -0
  14. {bioversions-0.5.487 → bioversions-0.5.489}/README.md +0 -0
  15. {bioversions-0.5.487 → bioversions-0.5.489}/docs/_config.yml +0 -0
  16. {bioversions-0.5.487 → bioversions-0.5.489}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.487 → bioversions-0.5.489}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.487 → bioversions-0.5.489}/docs/download.md +0 -0
  19. {bioversions-0.5.487 → bioversions-0.5.489}/docs/index.md +0 -0
  20. {bioversions-0.5.487 → bioversions-0.5.489}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.487 → bioversions-0.5.489}/docs/summary.md +0 -0
  22. {bioversions-0.5.487 → bioversions-0.5.489}/pyproject.toml +0 -0
  23. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.487 → bioversions-0.5.489}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.487 → bioversions-0.5.489}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.487
3
+ Version: 0.5.489
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-09-18'
4
- revision: 786
3
+ date: '2024-09-20'
4
+ revision: 788
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -1118,6 +1118,10 @@ database:
1118
1118
  homepage: ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/2024-05-20/
1119
1119
  retrieved: '2024-05-30'
1120
1120
  version: '2024-05-20'
1121
+ - date: '2024-09-08'
1122
+ homepage: ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/2024-09-08/
1123
+ retrieved: '2024-09-19'
1124
+ version: '2024-09-08'
1121
1125
  vtype: date
1122
1126
  - name: Compositional Dietary Nutrition Ontology
1123
1127
  prefix: cdno
@@ -3121,6 +3125,10 @@ database:
3121
3125
  homepage: ftp://ftp.ebi.ac.uk/pub/databases/intact/2024-05-20/
3122
3126
  retrieved: '2024-05-30'
3123
3127
  version: '2024-05-20'
3128
+ - date: '2024-09-08'
3129
+ homepage: ftp://ftp.ebi.ac.uk/pub/databases/intact/2024-09-08/
3130
+ retrieved: '2024-09-19'
3131
+ version: '2024-09-08'
3124
3132
  vtype: date
3125
3133
  - name: Integrative and Conjugative Element Ontology
3126
3134
  prefix: iceo
@@ -4603,6 +4611,12 @@ database:
4603
4611
  - date: '2024-09-16'
4604
4612
  retrieved: '2024-09-18'
4605
4613
  version: September 16, 2024
4614
+ - date: '2024-09-17'
4615
+ retrieved: '2024-09-19'
4616
+ version: September 17, 2024
4617
+ - date: '2024-09-18'
4618
+ retrieved: '2024-09-20'
4619
+ version: September 18, 2024
4606
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  vtype: date
4607
4621
  - name: 'OntoAvida: ontology for Avida digital evolution platform'
4608
4622
  prefix: ontoavida
@@ -6056,6 +6070,9 @@ database:
6056
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  - homepage: ftp://ftp.ebi.ac.uk/pub/databases/Rfam/14.10/
6057
6071
  retrieved: '2023-11-15'
6058
6072
  version: '14.10'
6073
+ - homepage: ftp://ftp.ebi.ac.uk/pub/databases/Rfam/15.0/
6074
+ retrieved: '2024-09-19'
6075
+ version: '15.0'
6059
6076
  vtype: semver_minor
6060
6077
  - name: Rhea
6061
6078
  prefix: rhea
@@ -9942,6 +9959,10 @@ database:
9942
9959
  version: '2024-09-15'
9943
9960
  - retrieved: '2024-09-18'
9944
9961
  version: '2024-09-16'
9962
+ - retrieved: '2024-09-19'
9963
+ version: '2024-09-17'
9964
+ - retrieved: '2024-09-20'
9965
+ version: '2024-09-18'
9945
9966
  vtype: date
9946
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  - name: Zebrafish Phenotype Ontology
9947
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  prefix: zp
@@ -0,0 +1,9 @@
1
+ # Errors
2
+
3
+ - failed to resolve DisGeNet
4
+ - failed to resolve Antibody Registry
5
+ - failed to resolve ITIS
6
+ - failed to resolve NPASS
7
+ - failed to resolve PathBank
8
+ - failed to resolve SwissLipids
9
+ - failed to resolve UniProt
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-09-18T00:58:50.709943</dc:date>
9
+ <dc:date>2024-09-20T01:01:52.169002</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
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  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-09-18T00:58:50.654639</dc:date>
9
+ <dc:date>2024-09-20T01:01:52.115090</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-09-18T00:58:50.569427</dc:date>
9
+ <dc:date>2024-09-20T01:01:52.031685</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
12
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.487
3
+ version = 0.5.489
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 786,
4
- "date": "2024-09-18",
3
+ "revision": 788,
4
+ "date": "2024-09-20",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -2041,6 +2041,12 @@
2041
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  "version": "2024-05-20",
2042
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  "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/2024-05-20/",
2043
2043
  "date": "2024-05-20"
2044
+ },
2045
+ {
2046
+ "retrieved": "2024-09-19",
2047
+ "version": "2024-09-08",
2048
+ "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/2024-09-08/",
2049
+ "date": "2024-09-08"
2044
2050
  }
2045
2051
  ],
2046
2052
  "vtype": "date"
@@ -5673,6 +5679,12 @@
5673
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  "version": "2024-05-20",
5674
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  "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/intact/2024-05-20/",
5675
5681
  "date": "2024-05-20"
5682
+ },
5683
+ {
5684
+ "retrieved": "2024-09-19",
5685
+ "version": "2024-09-08",
5686
+ "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/intact/2024-09-08/",
5687
+ "date": "2024-09-08"
5676
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  }
5677
5689
  ],
5678
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  "vtype": "date"
@@ -8322,6 +8334,16 @@
8322
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  "retrieved": "2024-09-18",
8323
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  "version": "September 16, 2024",
8324
8336
  "date": "2024-09-16"
8337
+ },
8338
+ {
8339
+ "retrieved": "2024-09-19",
8340
+ "version": "September 17, 2024",
8341
+ "date": "2024-09-17"
8342
+ },
8343
+ {
8344
+ "retrieved": "2024-09-20",
8345
+ "version": "September 18, 2024",
8346
+ "date": "2024-09-18"
8325
8347
  }
8326
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  ],
8327
8349
  "name": "Online Mendelian Inheritance in Man",
@@ -10987,6 +11009,11 @@
10987
11009
  "retrieved": "2023-11-15",
10988
11010
  "version": "14.10",
10989
11011
  "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/Rfam/14.10/"
11012
+ },
11013
+ {
11014
+ "retrieved": "2024-09-19",
11015
+ "version": "15.0",
11016
+ "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/Rfam/15.0/"
10990
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  }
10991
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  ],
10992
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  "vtype": "semver_minor"
@@ -18241,6 +18268,14 @@
18241
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  {
18242
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  "retrieved": "2024-09-18",
18243
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  "version": "2024-09-16"
18271
+ },
18272
+ {
18273
+ "retrieved": "2024-09-19",
18274
+ "version": "2024-09-17"
18275
+ },
18276
+ {
18277
+ "retrieved": "2024-09-20",
18278
+ "version": "2024-09-18"
18244
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  }
18245
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  ],
18246
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.487"
12
+ VERSION = "0.5.489"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.487
3
+ Version: 0.5.489
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,6 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve DisGeNet
4
- - failed to resolve Antibody Registry
5
- - failed to resolve ITIS
6
- - failed to resolve SwissLipids
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