bioversions 0.5.473__tar.gz → 0.5.475__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.473/src/bioversions.egg-info → bioversions-0.5.475}/PKG-INFO +1 -1
  2. {bioversions-0.5.473 → bioversions-0.5.475}/docs/_data/versions.yml +19 -2
  3. bioversions-0.5.475/docs/failures.md +5 -0
  4. {bioversions-0.5.473 → bioversions-0.5.475}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.473 → bioversions-0.5.475}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.473 → bioversions-0.5.475}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.473 → bioversions-0.5.475}/setup.cfg +1 -1
  8. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/resources/versions.json +31 -2
  9. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.473 → bioversions-0.5.475/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.473/docs/failures.md +0 -9
  12. {bioversions-0.5.473 → bioversions-0.5.475}/LICENSE +0 -0
  13. {bioversions-0.5.473 → bioversions-0.5.475}/MANIFEST.in +0 -0
  14. {bioversions-0.5.473 → bioversions-0.5.475}/README.md +0 -0
  15. {bioversions-0.5.473 → bioversions-0.5.475}/docs/_config.yml +0 -0
  16. {bioversions-0.5.473 → bioversions-0.5.475}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.473 → bioversions-0.5.475}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.473 → bioversions-0.5.475}/docs/download.md +0 -0
  19. {bioversions-0.5.473 → bioversions-0.5.475}/docs/index.md +0 -0
  20. {bioversions-0.5.473 → bioversions-0.5.475}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.473 → bioversions-0.5.475}/docs/summary.md +0 -0
  22. {bioversions-0.5.473 → bioversions-0.5.475}/pyproject.toml +0 -0
  23. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.473 → bioversions-0.5.475}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.473 → bioversions-0.5.475}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.473
3
+ Version: 0.5.475
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-09-02'
4
- revision: 772
3
+ date: '2024-09-06'
4
+ revision: 774
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -3804,6 +3804,10 @@ database:
3804
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  homepage: https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-07-11
3805
3805
  retrieved: '2024-07-12'
3806
3806
  version: '2024-07-11'
3807
+ - date: '2024-09-05'
3808
+ homepage: https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-09-05
3809
+ retrieved: '2024-09-06'
3810
+ version: '2024-09-05'
3807
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  vtype: date
3808
3812
  - name: Molecular Process Ontology
3809
3813
  prefix: mop
@@ -4558,6 +4562,12 @@ database:
4558
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  - date: '2024-07-31'
4559
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  retrieved: '2024-08-02'
4560
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  version: July 31, 2024
4565
+ - date: '2024-09-03'
4566
+ retrieved: '2024-09-05'
4567
+ version: September 3, 2024
4568
+ - date: '2024-09-04'
4569
+ retrieved: '2024-09-06'
4570
+ version: September 4, 2024
4561
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  vtype: date
4562
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
4563
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  prefix: ontoavida
@@ -6164,6 +6174,9 @@ database:
6164
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  - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_08052024.zip
6165
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  retrieved: '2024-08-06'
6166
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  version: '2024-08-05'
6177
+ - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_09032024.zip
6178
+ retrieved: '2024-09-05'
6179
+ version: '2024-09-03'
6167
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  vtype: date
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  - name: Saccharomyces Genome Database
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  prefix: sgd
@@ -9852,6 +9865,10 @@ database:
9852
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  version: '2024-08-30'
9853
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  - retrieved: '2024-09-02'
9854
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  version: '2024-08-31'
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+ - retrieved: '2024-09-05'
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+ version: '2024-09-03'
9870
+ - retrieved: '2024-09-06'
9871
+ version: '2024-09-04'
9855
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  vtype: date
9856
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  - name: Zebrafish Phenotype Ontology
9857
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  prefix: zp
@@ -0,0 +1,5 @@
1
+ # Errors
2
+
3
+ - failed to resolve DisGeNet
4
+ - failed to resolve Antibody Registry
5
+ - failed to resolve SwissLipids
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-09-03T00:58:19.084964</dc:date>
9
+ <dc:date>2024-09-06T00:58:21.190193</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-09-03T00:58:19.032254</dc:date>
9
+ <dc:date>2024-09-06T00:58:21.136800</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-09-03T00:58:18.951152</dc:date>
9
+ <dc:date>2024-09-06T00:58:21.053581</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
12
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
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  [metadata]
2
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  name = bioversions
3
- version = 0.5.473
3
+ version = 0.5.475
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 772,
4
- "date": "2024-09-02",
3
+ "revision": 774,
4
+ "date": "2024-09-06",
5
5
  "author": "runner"
6
6
  },
7
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  "database": [
@@ -6908,6 +6908,12 @@
6908
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  "version": "2024-07-11",
6909
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  "homepage": "https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-07-11",
6910
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  "date": "2024-07-11"
6911
+ },
6912
+ {
6913
+ "retrieved": "2024-09-06",
6914
+ "version": "2024-09-05",
6915
+ "homepage": "https://github.com/vanallenlab/moalmanac-db/releases/tag/v.2024-09-05",
6916
+ "date": "2024-09-05"
6911
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  }
6912
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  ],
6913
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  "name": "Molecular Oncology Almanac",
@@ -8247,6 +8253,16 @@
8247
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  "retrieved": "2024-08-02",
8248
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  "version": "July 31, 2024",
8249
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  "date": "2024-07-31"
8256
+ },
8257
+ {
8258
+ "retrieved": "2024-09-05",
8259
+ "version": "September 3, 2024",
8260
+ "date": "2024-09-03"
8261
+ },
8262
+ {
8263
+ "retrieved": "2024-09-06",
8264
+ "version": "September 4, 2024",
8265
+ "date": "2024-09-04"
8250
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  }
8251
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  ],
8252
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  "name": "Online Mendelian Inheritance in Man",
@@ -11167,6 +11183,11 @@
11167
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  "retrieved": "2024-08-06",
11168
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  "version": "2024-08-05",
11169
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  "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_08052024.zip"
11186
+ },
11187
+ {
11188
+ "retrieved": "2024-09-05",
11189
+ "version": "2024-09-03",
11190
+ "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_09032024.zip"
11170
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  }
11171
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  ],
11172
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  "name": "RxNorm",
@@ -18080,6 +18101,14 @@
18080
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  {
18081
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  "retrieved": "2024-09-02",
18082
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  "version": "2024-08-31"
18104
+ },
18105
+ {
18106
+ "retrieved": "2024-09-05",
18107
+ "version": "2024-09-03"
18108
+ },
18109
+ {
18110
+ "retrieved": "2024-09-06",
18111
+ "version": "2024-09-04"
18083
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  }
18084
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  ],
18085
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
10
  ]
11
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12
- VERSION = "0.5.473"
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+ VERSION = "0.5.475"
13
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14
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15
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.473
3
+ Version: 0.5.475
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,9 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve DisGeNet
4
- - issue parsing Online Mendelian Inheritance in Man: Issue parsing OMIMGetter version Augu 30, 2024 with fmt %B %d, %Y
5
- - failed to resolve Pathway Commons
6
- - failed to resolve Antibody Registry
7
- - failed to resolve PathBank
8
- - failed to resolve SwissLipids
9
- - failed to resolve Zebrafish Information Network
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