bioversions 0.5.456__tar.gz → 0.5.457__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.456/src/bioversions.egg-info → bioversions-0.5.457}/PKG-INFO +1 -1
  2. {bioversions-0.5.456 → bioversions-0.5.457}/docs/_data/versions.yml +16 -2
  3. bioversions-0.5.457/docs/failures.md +8 -0
  4. {bioversions-0.5.456 → bioversions-0.5.457}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.456 → bioversions-0.5.457}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.456 → bioversions-0.5.457}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.456 → bioversions-0.5.457}/setup.cfg +1 -1
  8. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/resources/versions.json +30 -2
  9. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.456 → bioversions-0.5.457/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.456/docs/failures.md +0 -6
  12. {bioversions-0.5.456 → bioversions-0.5.457}/LICENSE +0 -0
  13. {bioversions-0.5.456 → bioversions-0.5.457}/MANIFEST.in +0 -0
  14. {bioversions-0.5.456 → bioversions-0.5.457}/README.md +0 -0
  15. {bioversions-0.5.456 → bioversions-0.5.457}/docs/_config.yml +0 -0
  16. {bioversions-0.5.456 → bioversions-0.5.457}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.456 → bioversions-0.5.457}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.456 → bioversions-0.5.457}/docs/download.md +0 -0
  19. {bioversions-0.5.456 → bioversions-0.5.457}/docs/index.md +0 -0
  20. {bioversions-0.5.456 → bioversions-0.5.457}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.456 → bioversions-0.5.457}/docs/summary.md +0 -0
  22. {bioversions-0.5.456 → bioversions-0.5.457}/pyproject.toml +0 -0
  23. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.456 → bioversions-0.5.457}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.456 → bioversions-0.5.457}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.456
3
+ Version: 0.5.457
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-08-17'
4
- revision: 756
3
+ date: '2024-08-18'
4
+ revision: 757
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -2101,6 +2101,8 @@ database:
2101
2101
  version: 3.67.0
2102
2102
  - retrieved: '2024-08-11'
2103
2103
  version: 3.68.0
2104
+ - retrieved: '2024-08-18'
2105
+ version: 3.69.0
2104
2106
  vtype: semver
2105
2107
  - name: Exposure ontology
2106
2108
  prefix: exo
@@ -4621,6 +4623,8 @@ database:
4621
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  version: '2024-01-10'
4622
4624
  - retrieved: '2024-03-29'
4623
4625
  version: '2024-03-22'
4626
+ - retrieved: '2024-08-18'
4627
+ version: '2024-08-14'
4624
4628
  vtype: date
4625
4629
  - name: Ontology for Nutritional Studies
4626
4630
  prefix: ons
@@ -7462,6 +7466,8 @@ database:
7462
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  version: '2024-05-13'
7463
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  - retrieved: '2024-08-11'
7464
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  version: '2024-07-03'
7469
+ - retrieved: '2024-08-18'
7470
+ version: '2024-08-06'
7465
7471
  vtype: date
7466
7472
  - name: The COVID-19 Infectious Disease Ontology
7467
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  prefix: idocovid19
@@ -7498,6 +7504,8 @@ database:
7498
7504
  version: '2024-03-03'
7499
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  - retrieved: '2024-08-11'
7500
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  version: '2024-08-05'
7507
+ - retrieved: '2024-08-18'
7508
+ version: '2024-08-07'
7501
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  vtype: date
7502
7510
  - name: The Echinoderm Anatomy and Development Ontology
7503
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  prefix: ecao
@@ -7876,6 +7884,8 @@ database:
7876
7884
  version: '2024-04-18'
7877
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  - retrieved: '2024-06-02'
7878
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  version: '2024-05-22'
7887
+ - retrieved: '2024-08-18'
7888
+ version: '2024-08-14'
7879
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  vtype: date
7880
7890
  - name: Vertebrate Skeletal Anatomy Ontology
7881
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  prefix: vsao
@@ -7916,6 +7926,8 @@ database:
7916
7926
  version: '2024-06-18'
7917
7927
  - retrieved: '2024-08-11'
7918
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  version: '2024-07-22'
7929
+ - retrieved: '2024-08-18'
7930
+ version: '2024-08-13'
7919
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  vtype: date
7920
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  - name: VEuPathDB Ontology
7921
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  prefix: eupath
@@ -9755,6 +9767,8 @@ database:
9755
9767
  version: '2024-08-14'
9756
9768
  - retrieved: '2024-08-17'
9757
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  version: '2024-08-15'
9770
+ - retrieved: '2024-08-18'
9771
+ version: '2024-08-16'
9758
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  vtype: date
9759
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  - name: Zebrafish Phenotype Ontology
9760
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  prefix: zp
@@ -0,0 +1,8 @@
1
+ # Errors
2
+
3
+ - failed to resolve DisGeNet
4
+ - issue parsing Online Mendelian Inheritance in Man: Issue parsing OMIMGetter version Augu 16, 2024 with fmt %B %d, %Y
5
+ - failed to resolve Antibody Registry
6
+ - failed to resolve National Cancer Institute Thesaurus
7
+ - failed to resolve PathBank
8
+ - failed to resolve SwissLipids
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-08-17T00:53:56.576567</dc:date>
9
+ <dc:date>2024-08-18T00:59:23.772657</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-08-17T00:53:56.523925</dc:date>
9
+ <dc:date>2024-08-18T00:59:23.719239</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
12
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-08-17T00:53:56.441800</dc:date>
9
+ <dc:date>2024-08-18T00:59:23.636649</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
12
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
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  name = bioversions
3
- version = 0.5.456
3
+ version = 0.5.457
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 756,
4
- "date": "2024-08-17",
3
+ "revision": 757,
4
+ "date": "2024-08-18",
5
5
  "author": "runner"
6
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  },
7
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  "database": [
@@ -3846,6 +3846,10 @@
3846
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  {
3847
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  "retrieved": "2024-08-11",
3848
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  "version": "3.68.0"
3849
+ },
3850
+ {
3851
+ "retrieved": "2024-08-18",
3852
+ "version": "3.69.0"
3849
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  }
3850
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  ],
3851
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  "vtype": "semver"
@@ -8370,6 +8374,10 @@
8370
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  {
8371
8375
  "retrieved": "2024-03-29",
8372
8376
  "version": "2024-03-22"
8377
+ },
8378
+ {
8379
+ "retrieved": "2024-08-18",
8380
+ "version": "2024-08-14"
8373
8381
  }
8374
8382
  ],
8375
8383
  "name": "Ontology for Modeling and Representation of Social Entities",
@@ -13743,6 +13751,10 @@
13743
13751
  {
13744
13752
  "retrieved": "2024-08-11",
13745
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  "version": "2024-07-03"
13754
+ },
13755
+ {
13756
+ "retrieved": "2024-08-18",
13757
+ "version": "2024-08-06"
13746
13758
  }
13747
13759
  ],
13748
13760
  "vtype": "date"
@@ -13813,6 +13825,10 @@
13813
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  {
13814
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  "retrieved": "2024-08-11",
13815
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  "version": "2024-08-05"
13828
+ },
13829
+ {
13830
+ "retrieved": "2024-08-18",
13831
+ "version": "2024-08-07"
13816
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  }
13817
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  ],
13818
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  "vtype": "date"
@@ -14506,6 +14522,10 @@
14506
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  {
14507
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  "retrieved": "2024-06-02",
14508
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  "version": "2024-05-22"
14525
+ },
14526
+ {
14527
+ "retrieved": "2024-08-18",
14528
+ "version": "2024-08-14"
14509
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  }
14510
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  ],
14511
14531
  "name": "Vertebrate Breed Ontology",
@@ -14585,6 +14605,10 @@
14585
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  {
14586
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  "retrieved": "2024-08-11",
14587
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  "version": "2024-07-22"
14608
+ },
14609
+ {
14610
+ "retrieved": "2024-08-18",
14611
+ "version": "2024-08-13"
14588
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  }
14589
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  ],
14590
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  "vtype": "date"
@@ -17897,6 +17921,10 @@
17897
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  {
17898
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  "retrieved": "2024-08-17",
17899
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  "version": "2024-08-15"
17924
+ },
17925
+ {
17926
+ "retrieved": "2024-08-18",
17927
+ "version": "2024-08-16"
17900
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  }
17901
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  ],
17902
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
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12
- VERSION = "0.5.456"
12
+ VERSION = "0.5.457"
13
13
 
14
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15
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.456
3
+ Version: 0.5.457
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,6 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve DisGeNet
4
- - issue parsing Online Mendelian Inheritance in Man: Issue parsing OMIMGetter version Augu 15, 2024 with fmt %B %d, %Y
5
- - failed to resolve Antibody Registry
6
- - failed to resolve SwissLipids
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