bioversions 0.5.445__tar.gz → 0.5.447__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.445/src/bioversions.egg-info → bioversions-0.5.447}/PKG-INFO +1 -1
  2. {bioversions-0.5.445 → bioversions-0.5.447}/docs/_data/versions.yml +9 -2
  3. {bioversions-0.5.445 → bioversions-0.5.447}/docs/failures.md +1 -2
  4. {bioversions-0.5.445 → bioversions-0.5.447}/docs/img/has_release_url.svg +2 -2
  5. {bioversions-0.5.445 → bioversions-0.5.447}/docs/img/version_date_types.svg +2 -2
  6. {bioversions-0.5.445 → bioversions-0.5.447}/docs/img/version_types.svg +2 -2
  7. {bioversions-0.5.445 → bioversions-0.5.447}/setup.cfg +1 -1
  8. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/resources/versions.json +15 -2
  9. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.445 → bioversions-0.5.447/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.445 → bioversions-0.5.447}/LICENSE +0 -0
  12. {bioversions-0.5.445 → bioversions-0.5.447}/MANIFEST.in +0 -0
  13. {bioversions-0.5.445 → bioversions-0.5.447}/README.md +0 -0
  14. {bioversions-0.5.445 → bioversions-0.5.447}/docs/_config.yml +0 -0
  15. {bioversions-0.5.445 → bioversions-0.5.447}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.445 → bioversions-0.5.447}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.445 → bioversions-0.5.447}/docs/download.md +0 -0
  18. {bioversions-0.5.445 → bioversions-0.5.447}/docs/index.md +0 -0
  19. {bioversions-0.5.445 → bioversions-0.5.447}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.445 → bioversions-0.5.447}/docs/summary.md +0 -0
  21. {bioversions-0.5.445 → bioversions-0.5.447}/pyproject.toml +0 -0
  22. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/civic.py +0 -0
  39. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.445 → bioversions-0.5.447}/tests/test_bioversions.py +0 -0
{bioversions-0.5.445/src/bioversions.egg-info → bioversions-0.5.447}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.445
3
+ Version: 0.5.447
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.445 → bioversions-0.5.447}/docs/_data/versions.yml RENAMED
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-08-05'
4
- revision: 745
3
+ date: '2024-08-07'
4
+ revision: 747
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -6016,6 +6016,9 @@ database:
6016
6016
  - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_07012024.zip
6017
6017
  retrieved: '2024-07-02'
6018
6018
  version: '2024-07-01'
6019
+ - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_08052024.zip
6020
+ retrieved: '2024-08-06'
6021
+ version: '2024-08-05'
6019
6022
  vtype: date
6020
6023
  - name: Saccharomyces Genome Database
6021
6024
  prefix: sgd
@@ -9622,6 +9625,10 @@ database:
9622
9625
  version: '2024-08-02'
9623
9626
  - retrieved: '2024-08-05'
9624
9627
  version: '2024-08-03'
9628
+ - retrieved: '2024-08-06'
9629
+ version: '2024-08-04'
9630
+ - retrieved: '2024-08-07'
9631
+ version: '2024-08-05'
9625
9632
  vtype: date
9626
9633
  - name: Zebrafish Phenotype Ontology
9627
9634
  prefix: zp
{bioversions-0.5.445 → bioversions-0.5.447}/docs/failures.md RENAMED
@@ -2,7 +2,6 @@
2
2
 
3
3
  - issue parsing Drug Gene Interaction Database:
4
4
  - failed to resolve DisGeNet
5
- - issue parsing Online Mendelian Inheritance in Man: Issue parsing OMIMGetter version Augu 2, 2024 with fmt %B %d, %Y
5
+ - issue parsing Online Mendelian Inheritance in Man: Issue parsing OMIMGetter version Augu 5, 2024 with fmt %B %d, %Y
6
6
  - failed to resolve Antibody Registry
7
- - failed to resolve PathBank
8
7
  - failed to resolve SwissLipids
{bioversions-0.5.445 → bioversions-0.5.447}/docs/img/has_release_url.svg RENAMED
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-08-05T00:56:40.995253</dc:date>
9
+ <dc:date>2024-08-07T00:55:37.245845</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.9.1, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.9.1.post1, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
{bioversions-0.5.445 → bioversions-0.5.447}/docs/img/version_date_types.svg RENAMED
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-08-05T00:56:40.941212</dc:date>
9
+ <dc:date>2024-08-07T00:55:37.193189</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.9.1, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.9.1.post1, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
{bioversions-0.5.445 → bioversions-0.5.447}/docs/img/version_types.svg RENAMED
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-08-05T00:56:40.860093</dc:date>
9
+ <dc:date>2024-08-07T00:55:37.111211</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.9.1, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.9.1.post1, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
{bioversions-0.5.445 → bioversions-0.5.447}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.445
3
+ version = 0.5.447
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
{bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/resources/versions.json RENAMED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 745,
4
- "date": "2024-08-05",
3
+ "revision": 747,
4
+ "date": "2024-08-07",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -10885,6 +10885,11 @@
10885
10885
  "retrieved": "2024-07-02",
10886
10886
  "version": "2024-07-01",
10887
10887
  "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_07012024.zip"
10888
+ },
10889
+ {
10890
+ "retrieved": "2024-08-06",
10891
+ "version": "2024-08-05",
10892
+ "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_08052024.zip"
10888
10893
  }
10889
10894
  ],
10890
10895
  "name": "RxNorm",
@@ -17636,6 +17641,14 @@
17636
17641
  {
17637
17642
  "retrieved": "2024-08-05",
17638
17643
  "version": "2024-08-03"
17644
+ },
17645
+ {
17646
+ "retrieved": "2024-08-06",
17647
+ "version": "2024-08-04"
17648
+ },
17649
+ {
17650
+ "retrieved": "2024-08-07",
17651
+ "version": "2024-08-05"
17639
17652
  }
17640
17653
  ],
17641
17654
  "name": "Zebrafish Information Network",
{bioversions-0.5.445 → bioversions-0.5.447}/src/bioversions/version.py RENAMED
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.445"
12
+ VERSION = "0.5.447"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
{bioversions-0.5.445 → bioversions-0.5.447/src/bioversions.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.445
3
+ Version: 0.5.447
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.445 → bioversions-0.5.447}/LICENSE RENAMED
File without changes
{bioversions-0.5.445 → bioversions-0.5.447}/MANIFEST.in RENAMED
File without changes
{bioversions-0.5.445 → bioversions-0.5.447}/README.md RENAMED
File without changes