bioversions 0.5.390__tar.gz → 0.5.392__tar.gz

{bioversions-0.5.390/src/bioversions.egg-info → bioversions-0.5.392}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.390
+Version: 0.5.392
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases

{bioversions-0.5.390 → bioversions-0.5.392}/docs/_data/versions.yml

@@ -1,7 +1,7 @@
 annotations:
   author: runner
-  date: '2024-06-01'
-  revision: 691
+  date: '2024-06-03'
+  revision: 693
 database:
 - name: A nomenclatural ontology for biological names
   prefix: nomen
@@ -336,6 +336,9 @@ database:
   - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.233
     retrieved: '2024-05-02'
     version: 4.4.233
+  - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.234
+    retrieved: '2024-06-02'
+    version: 4.4.234
   vtype: semver
 - name: Bioinformatics operations, data types, formats, identifiers and topics
   prefix: edam
@@ -764,6 +767,9 @@ database:
   - homepage: ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel233/
     retrieved: '2024-05-02'
     version: '233'
+  - homepage: ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel234/
+    retrieved: '2024-06-02'
+    version: '234'
   vtype: sequential
 - name: ChEBI Integrated Role Ontology
   prefix: chiro
@@ -883,6 +889,8 @@ database:
     version: 01-Apr-2024
   - retrieved: '2024-05-01'
     version: 01-May-2024
+  - retrieved: '2024-06-02'
+    version: 01-Jun-2024
   vtype: date
 - name: clinical LABoratory Ontology
   prefix: labo
@@ -1080,6 +1088,8 @@ database:
     version: '2024-03-29'
   - retrieved: '2024-05-19'
     version: '2024-05-13'
+  - retrieved: '2024-06-02'
+    version: '2024-05-24'
   vtype: date
 - name: Confidence Information Ontology
   prefix: cio
@@ -3234,6 +3244,8 @@ database:
     version: '2024-03-27'
   - retrieved: '2024-05-05'
     version: '2024-04-23'
+  - retrieved: '2024-06-02'
+    version: '2024-05-28'
   vtype: date
 - name: Mass Spectrometry Controlled Vocabulary
   prefix: ms
@@ -3360,6 +3372,8 @@ database:
     version: '2024-02-05'
   - retrieved: '2024-05-19'
     version: '2024-05-07'
+  - retrieved: '2024-06-02'
+    version: '2024-05-24'
   vtype: date
 - name: Mental Disease Ontology
   prefix: mfomd
@@ -4203,6 +4217,9 @@ database:
   - date: '2024-05-30'
     retrieved: '2024-06-01'
     version: May 30, 2024
+  - date: '2024-05-31'
+    retrieved: '2024-06-02'
+    version: May 31, 2024
   vtype: date
 - name: 'OntoAvida: ontology for Avida digital evolution platform'
   prefix: ontoavida
@@ -4943,6 +4960,8 @@ database:
     version: '2023-07-25'
   - retrieved: '2024-05-19'
     version: '2017-11-06'
+  - retrieved: '2024-06-02'
+    version: '2023-11-10'
   vtype: date
 - name: Plant Ontology
   prefix: po
@@ -5097,6 +5116,10 @@ database:
     homepage: https://www.pombase.org/data/releases/pombase-2024-05-01/
     retrieved: '2024-05-02'
     version: '2024-05-01'
+  - date: '2024-06-01'
+    homepage: https://www.pombase.org/data/releases/pombase-2024-06-01/
+    retrieved: '2024-06-03'
+    version: '2024-06-01'
   vtype: date
 - name: Population and Community Ontology
   prefix: pco
@@ -6928,6 +6951,10 @@ database:
     version: '2024-05-31'
   - retrieved: '2024-06-01'
     version: '2024-06-01'
+  - retrieved: '2024-06-02'
+    version: '2024-06-02'
+  - retrieved: '2024-06-03'
+    version: '2024-06-03'
   vtype: date
 - name: SWO (The Software Ontology)
   prefix: swo
@@ -7410,6 +7437,8 @@ database:
     version: '2024-03-20'
   - retrieved: '2024-04-13'
     version: '2024-04-09'
+  - retrieved: '2024-06-02'
+    version: '2024-05-29'
   vtype: semver
 - name: Variation Ontology
   prefix: vario
@@ -7438,6 +7467,8 @@ database:
     version: '2024-01-04'
   - retrieved: '2024-05-05'
     version: '2024-04-18'
+  - retrieved: '2024-06-02'
+    version: '2024-05-22'
   vtype: date
 - name: Vertebrate Skeletal Anatomy Ontology
   prefix: vsao
@@ -9175,6 +9206,10 @@ database:
     version: '2024-05-29'
   - retrieved: '2024-06-01'
     version: '2024-05-30'
+  - retrieved: '2024-06-02'
+    version: '2024-05-31'
+  - retrieved: '2024-06-03'
+    version: '2024-06-01'
   vtype: date
 - name: Zebrafish Phenotype Ontology
   prefix: zp

bioversions-0.5.392/docs/failures.md

@@ -0,0 +1,6 @@
+# Errors
+
+- issue parsing Drug Gene Interaction Database: 
+- failed to resolve DisGeNet
+- failed to resolve Antibody Registry
+- failed to resolve Ensembl

{bioversions-0.5.390 → bioversions-0.5.392}/docs/img/has_release_url.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-06-01T00:55:00.749775</dc:date>
+    <dc:date>2024-06-03T00:52:34.728170</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.390 → bioversions-0.5.392}/docs/img/version_date_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-06-01T00:55:00.677925</dc:date>
+    <dc:date>2024-06-03T00:52:34.657228</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.390 → bioversions-0.5.392}/docs/img/version_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-06-01T00:55:00.569115</dc:date>
+    <dc:date>2024-06-03T00:52:34.549544</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.390 → bioversions-0.5.392}/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = bioversions
-version = 0.5.390
+version = 0.5.392
 description = What's the current version for each biological database?
 long_description = file: README.md
 long_description_content_type = text/markdown

{bioversions-0.5.390 → bioversions-0.5.392}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 691,
-    "date": "2024-06-01",
+    "revision": 693,
+    "date": "2024-06-03",
     "author": "runner"
   },
   "database": [
@@ -611,6 +611,11 @@
           "retrieved": "2024-05-02",
           "version": "4.4.233",
           "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.233"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "4.4.234",
+          "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.234"
         }
       ],
       "vtype": "semver"
@@ -1406,6 +1411,11 @@
           "retrieved": "2024-05-02",
           "version": "233",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel233/"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "234",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel234/"
         }
       ],
       "vtype": "sequential"
@@ -1611,6 +1621,10 @@
         {
           "retrieved": "2024-05-01",
           "version": "01-May-2024"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "01-Jun-2024"
         }
       ],
       "name": "CiVIC",
@@ -1970,6 +1984,10 @@
         {
           "retrieved": "2024-05-19",
           "version": "2024-05-13"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2024-05-24"
         }
       ],
       "name": "Compositional Dietary Nutrition Ontology",
@@ -5857,6 +5875,10 @@
         {
           "retrieved": "2024-05-05",
           "version": "2024-04-23"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2024-05-28"
         }
       ],
       "vtype": "date"
@@ -6102,6 +6124,10 @@
         {
           "retrieved": "2024-05-19",
           "version": "2024-05-07"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2024-05-24"
         }
       ],
       "vtype": "date"
@@ -7610,6 +7636,11 @@
           "retrieved": "2024-06-01",
           "version": "May 30, 2024",
           "date": "2024-05-30"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "May 31, 2024",
+          "date": "2024-05-31"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -8974,6 +9005,10 @@
         {
           "retrieved": "2024-05-19",
           "version": "2017-11-06"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2023-11-10"
         }
       ],
       "name": "Plant Experimental Conditions Ontology",
@@ -9228,6 +9263,12 @@
           "version": "2024-05-01",
           "homepage": "https://www.pombase.org/data/releases/pombase-2024-05-01/",
           "date": "2024-05-01"
+        },
+        {
+          "retrieved": "2024-06-03",
+          "version": "2024-06-01",
+          "homepage": "https://www.pombase.org/data/releases/pombase-2024-06-01/",
+          "date": "2024-06-01"
         }
       ],
       "name": "PomBase",
@@ -12763,6 +12804,14 @@
         {
           "retrieved": "2024-06-01",
           "version": "2024-06-01"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2024-06-02"
+        },
+        {
+          "retrieved": "2024-06-03",
+          "version": "2024-06-03"
         }
       ],
       "name": "SwissLipids",
@@ -13659,6 +13708,10 @@
         {
           "retrieved": "2024-04-13",
           "version": "2024-04-09"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2024-05-29"
         }
       ],
       "vtype": "semver"
@@ -13710,6 +13763,10 @@
         {
           "retrieved": "2024-05-05",
           "version": "2024-04-18"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2024-05-22"
         }
       ],
       "name": "Vertebrate Breed Ontology",
@@ -16823,6 +16880,14 @@
         {
           "retrieved": "2024-06-01",
           "version": "2024-05-30"
+        },
+        {
+          "retrieved": "2024-06-02",
+          "version": "2024-05-31"
+        },
+        {
+          "retrieved": "2024-06-03",
+          "version": "2024-06-01"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.5.390 → bioversions-0.5.392}/src/bioversions/version.py

@@ -9,7 +9,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.5.390"
+VERSION = "0.5.392"
 
 
 def get_git_hash() -> str:

{bioversions-0.5.390 → bioversions-0.5.392/src/bioversions.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.390
+Version: 0.5.392
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases

bioversions-0.5.390/docs/failures.md

@@ -1,9 +0,0 @@
-# Errors
-
-- issue parsing Drug Gene Interaction Database: 
-- failed to resolve DisGeNet
-- failed to resolve Pathway Commons
-- failed to resolve Antibody Registry
-- failed to resolve Ensembl
-- failed to resolve NPASS
-- issue parsing PomBase: Issue parsing PombaseGetter version web_2024-05-25-prod.docker_image with fmt %Y-%m-%d