bioversions 0.5.388__tar.gz → 0.5.390__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.388/src/bioversions.egg-info → bioversions-0.5.390}/PKG-INFO +1 -1
  2. {bioversions-0.5.388 → bioversions-0.5.390}/docs/_data/versions.yml +23 -2
  3. {bioversions-0.5.388 → bioversions-0.5.390}/docs/failures.md +2 -0
  4. {bioversions-0.5.388 → bioversions-0.5.390}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.388 → bioversions-0.5.390}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.388 → bioversions-0.5.390}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.388 → bioversions-0.5.390}/setup.cfg +1 -1
  8. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/resources/versions.json +39 -2
  9. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.388 → bioversions-0.5.390/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.388 → bioversions-0.5.390}/LICENSE +0 -0
  12. {bioversions-0.5.388 → bioversions-0.5.390}/MANIFEST.in +0 -0
  13. {bioversions-0.5.388 → bioversions-0.5.390}/README.md +0 -0
  14. {bioversions-0.5.388 → bioversions-0.5.390}/docs/_config.yml +0 -0
  15. {bioversions-0.5.388 → bioversions-0.5.390}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.388 → bioversions-0.5.390}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.388 → bioversions-0.5.390}/docs/download.md +0 -0
  18. {bioversions-0.5.388 → bioversions-0.5.390}/docs/index.md +0 -0
  19. {bioversions-0.5.388 → bioversions-0.5.390}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.388 → bioversions-0.5.390}/docs/summary.md +0 -0
  21. {bioversions-0.5.388 → bioversions-0.5.390}/pyproject.toml +0 -0
  22. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/civic.py +0 -0
  39. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.388 → bioversions-0.5.390}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.388 → bioversions-0.5.390}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.388
3
+ Version: 0.5.390
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-05-30'
4
- revision: 689
3
+ date: '2024-06-01'
4
+ revision: 691
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -3041,6 +3041,10 @@ database:
3041
3041
  homepage: ftp://ftp.ebi.ac.uk/pub/databases/interpro/99.0/
3042
3042
  retrieved: '2024-03-30'
3043
3043
  version: '99.0'
3044
+ - date: '2024-05-30'
3045
+ homepage: ftp://ftp.ebi.ac.uk/pub/databases/interpro/100.0/
3046
+ retrieved: '2024-05-31'
3047
+ version: '100.0'
3044
3048
  vtype: semver_minor
3045
3049
  - name: ITIS
3046
3050
  prefix: itis
@@ -4193,6 +4197,12 @@ database:
4193
4197
  - date: '2024-05-28'
4194
4198
  retrieved: '2024-05-30'
4195
4199
  version: May 28, 2024
4200
+ - date: '2024-05-29'
4201
+ retrieved: '2024-05-31'
4202
+ version: May 29, 2024
4203
+ - date: '2024-05-30'
4204
+ retrieved: '2024-06-01'
4205
+ version: May 30, 2024
4196
4206
  vtype: date
4197
4207
  - name: 'OntoAvida: ontology for Avida digital evolution platform'
4198
4208
  prefix: ontoavida
@@ -5280,6 +5290,9 @@ database:
5280
5290
  - homepage: https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2024-05-01
5281
5291
  retrieved: '2024-05-01'
5282
5292
  version: '2024-05-01'
5293
+ - homepage: https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2024-06-01
5294
+ retrieved: '2024-06-01'
5295
+ version: '2024-06-01'
5283
5296
  vtype: date
5284
5297
  - name: Radiation Biology Ontology
5285
5298
  prefix: rbo
@@ -6911,6 +6924,10 @@ database:
6911
6924
  version: '2024-05-29'
6912
6925
  - retrieved: '2024-05-30'
6913
6926
  version: '2024-05-30'
6927
+ - retrieved: '2024-05-31'
6928
+ version: '2024-05-31'
6929
+ - retrieved: '2024-06-01'
6930
+ version: '2024-06-01'
6914
6931
  vtype: date
6915
6932
  - name: SWO (The Software Ontology)
6916
6933
  prefix: swo
@@ -9154,6 +9171,10 @@ database:
9154
9171
  version: '2024-05-27'
9155
9172
  - retrieved: '2024-05-30'
9156
9173
  version: '2024-05-28'
9174
+ - retrieved: '2024-05-31'
9175
+ version: '2024-05-29'
9176
+ - retrieved: '2024-06-01'
9177
+ version: '2024-05-30'
9157
9178
  vtype: date
9158
9179
  - name: Zebrafish Phenotype Ontology
9159
9180
  prefix: zp
@@ -2,6 +2,8 @@
2
2
 
3
3
  - issue parsing Drug Gene Interaction Database:
4
4
  - failed to resolve DisGeNet
5
+ - failed to resolve Pathway Commons
5
6
  - failed to resolve Antibody Registry
6
7
  - failed to resolve Ensembl
8
+ - failed to resolve NPASS
7
9
  - issue parsing PomBase: Issue parsing PombaseGetter version web_2024-05-25-prod.docker_image with fmt %Y-%m-%d
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-30T00:51:34.869852</dc:date>
9
+ <dc:date>2024-06-01T00:55:00.749775</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-30T00:51:34.795491</dc:date>
9
+ <dc:date>2024-06-01T00:55:00.677925</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-30T00:51:34.684037</dc:date>
9
+ <dc:date>2024-06-01T00:55:00.569115</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.388
3
+ version = 0.5.390
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 689,
4
- "date": "2024-05-30",
3
+ "revision": 691,
4
+ "date": "2024-06-01",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -5503,6 +5503,12 @@
5503
5503
  "version": "99.0",
5504
5504
  "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/99.0/",
5505
5505
  "date": "2024-03-28"
5506
+ },
5507
+ {
5508
+ "retrieved": "2024-05-31",
5509
+ "version": "100.0",
5510
+ "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/100.0/",
5511
+ "date": "2024-05-30"
5506
5512
  }
5507
5513
  ],
5508
5514
  "vtype": "semver_minor"
@@ -7594,6 +7600,16 @@
7594
7600
  "retrieved": "2024-05-30",
7595
7601
  "version": "May 28, 2024",
7596
7602
  "date": "2024-05-28"
7603
+ },
7604
+ {
7605
+ "retrieved": "2024-05-31",
7606
+ "version": "May 29, 2024",
7607
+ "date": "2024-05-29"
7608
+ },
7609
+ {
7610
+ "retrieved": "2024-06-01",
7611
+ "version": "May 30, 2024",
7612
+ "date": "2024-05-30"
7597
7613
  }
7598
7614
  ],
7599
7615
  "name": "Online Mendelian Inheritance in Man",
@@ -9556,6 +9572,11 @@
9556
9572
  "retrieved": "2024-05-01",
9557
9573
  "version": "2024-05-01",
9558
9574
  "homepage": "https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2024-05-01"
9575
+ },
9576
+ {
9577
+ "retrieved": "2024-06-01",
9578
+ "version": "2024-06-01",
9579
+ "homepage": "https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2024-06-01"
9559
9580
  }
9560
9581
  ],
9561
9582
  "name": "PubChem",
@@ -12734,6 +12755,14 @@
12734
12755
  {
12735
12756
  "retrieved": "2024-05-30",
12736
12757
  "version": "2024-05-30"
12758
+ },
12759
+ {
12760
+ "retrieved": "2024-05-31",
12761
+ "version": "2024-05-31"
12762
+ },
12763
+ {
12764
+ "retrieved": "2024-06-01",
12765
+ "version": "2024-06-01"
12737
12766
  }
12738
12767
  ],
12739
12768
  "name": "SwissLipids",
@@ -16786,6 +16815,14 @@
16786
16815
  {
16787
16816
  "retrieved": "2024-05-30",
16788
16817
  "version": "2024-05-28"
16818
+ },
16819
+ {
16820
+ "retrieved": "2024-05-31",
16821
+ "version": "2024-05-29"
16822
+ },
16823
+ {
16824
+ "retrieved": "2024-06-01",
16825
+ "version": "2024-05-30"
16789
16826
  }
16790
16827
  ],
16791
16828
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.388"
12
+ VERSION = "0.5.390"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.388
3
+ Version: 0.5.390
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
File without changes
File without changes
File without changes