bioversions 0.5.385__tar.gz → 0.5.387__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.385/src/bioversions.egg-info → bioversions-0.5.387}/PKG-INFO +1 -1
  2. {bioversions-0.5.385 → bioversions-0.5.387}/docs/_data/versions.yml +10 -2
  3. bioversions-0.5.387/docs/failures.md +8 -0
  4. {bioversions-0.5.385 → bioversions-0.5.387}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.385 → bioversions-0.5.387}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.385 → bioversions-0.5.387}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.385 → bioversions-0.5.387}/setup.cfg +1 -1
  8. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/resources/versions.json +18 -2
  9. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.385 → bioversions-0.5.387/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.385/docs/failures.md +0 -6
  12. {bioversions-0.5.385 → bioversions-0.5.387}/LICENSE +0 -0
  13. {bioversions-0.5.385 → bioversions-0.5.387}/MANIFEST.in +0 -0
  14. {bioversions-0.5.385 → bioversions-0.5.387}/README.md +0 -0
  15. {bioversions-0.5.385 → bioversions-0.5.387}/docs/_config.yml +0 -0
  16. {bioversions-0.5.385 → bioversions-0.5.387}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.385 → bioversions-0.5.387}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.385 → bioversions-0.5.387}/docs/download.md +0 -0
  19. {bioversions-0.5.385 → bioversions-0.5.387}/docs/index.md +0 -0
  20. {bioversions-0.5.385 → bioversions-0.5.387}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.385 → bioversions-0.5.387}/docs/summary.md +0 -0
  22. {bioversions-0.5.385 → bioversions-0.5.387}/pyproject.toml +0 -0
  23. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.385 → bioversions-0.5.387}/tests/test_bioversions.py +0 -0
{bioversions-0.5.385/src/bioversions.egg-info → bioversions-0.5.387}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.385
3
+ Version: 0.5.387
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.385 → bioversions-0.5.387}/docs/_data/versions.yml RENAMED
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-05-27'
4
- revision: 686
3
+ date: '2024-05-29'
4
+ revision: 688
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -6885,6 +6885,10 @@ database:
6885
6885
  version: '2024-05-26'
6886
6886
  - retrieved: '2024-05-27'
6887
6887
  version: '2024-05-27'
6888
+ - retrieved: '2024-05-28'
6889
+ version: '2024-05-28'
6890
+ - retrieved: '2024-05-29'
6891
+ version: '2024-05-29'
6888
6892
  vtype: date
6889
6893
  - name: SWO (The Software Ontology)
6890
6894
  prefix: swo
@@ -9118,6 +9122,10 @@ database:
9118
9122
  version: '2024-05-24'
9119
9123
  - retrieved: '2024-05-27'
9120
9124
  version: '2024-05-25'
9125
+ - retrieved: '2024-05-28'
9126
+ version: '2024-05-26'
9127
+ - retrieved: '2024-05-29'
9128
+ version: '2024-05-27'
9121
9129
  vtype: date
9122
9130
  - name: Zebrafish Phenotype Ontology
9123
9131
  prefix: zp
bioversions-0.5.387/docs/failures.md ADDED
@@ -0,0 +1,8 @@
1
+ # Errors
2
+
3
+ - issue parsing Drug Gene Interaction Database:
4
+ - failed to resolve DisGeNet
5
+ - failed to resolve Antibody Registry
6
+ - failed to resolve Ensembl
7
+ - failed to resolve National Cancer Institute Thesaurus
8
+ - issue parsing PomBase: Issue parsing PombaseGetter version web_2024-05-25-prod.docker_image with fmt %Y-%m-%d
{bioversions-0.5.385 → bioversions-0.5.387}/docs/img/has_release_url.svg RENAMED
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-27T00:52:12.041811</dc:date>
9
+ <dc:date>2024-05-29T00:55:00.592528</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
{bioversions-0.5.385 → bioversions-0.5.387}/docs/img/version_date_types.svg RENAMED
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-27T00:52:11.970643</dc:date>
9
+ <dc:date>2024-05-29T00:55:00.520247</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
{bioversions-0.5.385 → bioversions-0.5.387}/docs/img/version_types.svg RENAMED
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-27T00:52:11.861161</dc:date>
9
+ <dc:date>2024-05-29T00:55:00.411691</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
{bioversions-0.5.385 → bioversions-0.5.387}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.385
3
+ version = 0.5.387
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
{bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/resources/versions.json RENAMED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 686,
4
- "date": "2024-05-27",
3
+ "revision": 688,
4
+ "date": "2024-05-29",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -12690,6 +12690,14 @@
12690
12690
  {
12691
12691
  "retrieved": "2024-05-27",
12692
12692
  "version": "2024-05-27"
12693
+ },
12694
+ {
12695
+ "retrieved": "2024-05-28",
12696
+ "version": "2024-05-28"
12697
+ },
12698
+ {
12699
+ "retrieved": "2024-05-29",
12700
+ "version": "2024-05-29"
12693
12701
  }
12694
12702
  ],
12695
12703
  "name": "SwissLipids",
@@ -16724,6 +16732,14 @@
16724
16732
  {
16725
16733
  "retrieved": "2024-05-27",
16726
16734
  "version": "2024-05-25"
16735
+ },
16736
+ {
16737
+ "retrieved": "2024-05-28",
16738
+ "version": "2024-05-26"
16739
+ },
16740
+ {
16741
+ "retrieved": "2024-05-29",
16742
+ "version": "2024-05-27"
16727
16743
  }
16728
16744
  ],
16729
16745
  "name": "Zebrafish Information Network",
{bioversions-0.5.385 → bioversions-0.5.387}/src/bioversions/version.py RENAMED
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.385"
12
+ VERSION = "0.5.387"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
{bioversions-0.5.385 → bioversions-0.5.387/src/bioversions.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.385
3
+ Version: 0.5.387
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
bioversions-0.5.385/docs/failures.md DELETED
@@ -1,6 +0,0 @@
1
- # Errors
2
-
3
- - issue parsing Drug Gene Interaction Database:
4
- - failed to resolve DisGeNet
5
- - failed to resolve Antibody Registry
6
- - failed to resolve PathBank
{bioversions-0.5.385 → bioversions-0.5.387}/LICENSE RENAMED
File without changes
{bioversions-0.5.385 → bioversions-0.5.387}/MANIFEST.in RENAMED
File without changes
{bioversions-0.5.385 → bioversions-0.5.387}/README.md RENAMED
File without changes