bioversions 0.5.376__tar.gz → 0.5.378__tar.gz

{bioversions-0.5.376/src/bioversions.egg-info → bioversions-0.5.378}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.376
+Version: 0.5.378
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases

{bioversions-0.5.376 → bioversions-0.5.378}/docs/_data/versions.yml

@@ -1,7 +1,7 @@
 annotations:
   author: runner
-  date: '2024-05-18'
-  revision: 677
+  date: '2024-05-20'
+  revision: 679
 database:
 - name: A nomenclatural ontology for biological names
   prefix: nomen
@@ -628,6 +628,8 @@ database:
     version: '2024-02-13'
   - retrieved: '2024-04-12'
     version: '2024-04-05'
+  - retrieved: '2024-05-19'
+    version: '2024-05-15'
   vtype: date
 - name: Cell Type Ontology
   prefix: cl
@@ -1070,6 +1072,8 @@ database:
     version: '2024-03-20'
   - retrieved: '2024-04-06'
     version: '2024-03-29'
+  - retrieved: '2024-05-19'
+    version: '2024-05-13'
   vtype: date
 - name: Confidence Information Ontology
   prefix: cio
@@ -1974,6 +1978,8 @@ database:
     version: 3.64.0
   - retrieved: '2024-04-19'
     version: 3.65.0
+  - retrieved: '2024-05-19'
+    version: 3.66.0
   vtype: semver
 - name: Exposure ontology
   prefix: exo
@@ -3230,6 +3236,8 @@ database:
     version: 4.1.146
   - retrieved: '2024-04-28'
     version: 4.1.152
+  - retrieved: '2024-05-19'
+    version: 4.1.153
   vtype: date
 - name: Mathematical modeling ontology
   prefix: mamo
@@ -3324,6 +3332,8 @@ database:
     version: '2023-12-01'
   - retrieved: '2024-03-25'
     version: '2024-02-05'
+  - retrieved: '2024-05-19'
+    version: '2024-05-07'
   vtype: date
 - name: Mental Disease Ontology
   prefix: mfomd
@@ -4138,6 +4148,9 @@ database:
   - date: '2024-05-16'
     retrieved: '2024-05-18'
     version: May 16, 2024
+  - date: '2024-05-17'
+    retrieved: '2024-05-19'
+    version: May 17, 2024
   vtype: date
 - name: 'OntoAvida: ontology for Avida digital evolution platform'
   prefix: ontoavida
@@ -4298,6 +4311,8 @@ database:
     version: '2023-04-14'
   - retrieved: '2024-03-25'
     version: '2024-03-16'
+  - retrieved: '2024-05-19'
+    version: '2024-05-11'
   vtype: date
 - name: Ontology of Adverse Events
   prefix: oae
@@ -4352,6 +4367,8 @@ database:
     version: '2024-01-12'
   - retrieved: '2024-03-31'
     version: '2024-03-27'
+  - retrieved: '2024-05-19'
+    version: '2024-05-13'
   vtype: date
 - name: Ontology of Genetic Susceptibility Factor
   prefix: ogsf
@@ -4550,6 +4567,8 @@ database:
     version: 2.0.54
   - retrieved: '2024-04-21'
     version: 2.0.55
+  - retrieved: '2024-05-19'
+    version: 2.0.56
   vtype: semver
 - name: Ontology of units of Measure (OM)
   prefix: om
@@ -4617,6 +4636,8 @@ database:
 
       @authors T.M. de Farias, H. Chiba, J.T. Fernandez-Breis, E. Antezana, D. Kuznetsov,
       C. Dessimoz and F. Villiers.'
+  - retrieved: '2024-05-19'
+    version: '2.0'
   vtype: garbage
 - name: 'OVAE: Ontology of Vaccine Adverse Events'
   prefix: ovae
@@ -4866,6 +4887,8 @@ database:
     version: '2020-08-21'
   - retrieved: '2023-09-28'
     version: '2023-07-25'
+  - retrieved: '2024-05-19'
+    version: '2017-11-06'
   vtype: date
 - name: Plant Ontology
   prefix: po
@@ -5239,6 +5262,8 @@ database:
     version: '2023-09-05'
   - retrieved: '2024-03-25'
     version: '2024-02-29'
+  - retrieved: '2024-05-19'
+    version: '2024-05-13'
   vtype: date
 - name: Rat Genome Database
   prefix: rgd
@@ -6809,6 +6834,10 @@ database:
     version: '2024-05-17'
   - retrieved: '2024-05-18'
     version: '2024-05-18'
+  - retrieved: '2024-05-19'
+    version: '2024-05-19'
+  - retrieved: '2024-05-20'
+    version: '2024-05-20'
   vtype: date
 - name: SWO (The Software Ontology)
   prefix: swo
@@ -6925,6 +6954,8 @@ database:
     version: '2023-11-22'
   - retrieved: '2024-03-25'
     version: '2024-03-12'
+  - retrieved: '2024-05-19'
+    version: '2024-05-13'
   vtype: date
 - name: The COVID-19 Infectious Disease Ontology
   prefix: idocovid19
@@ -7104,6 +7135,8 @@ database:
     version: '2024-02-20'
   - retrieved: '2024-03-28'
     version: '2024-03-22'
+  - retrieved: '2024-05-19'
+    version: '2024-05-13'
   vtype: date
 - name: UBERON
   prefix: uberon
@@ -7339,6 +7372,8 @@ database:
     version: '2024-04-15'
   - retrieved: '2024-04-28'
     version: '2024-04-23'
+  - retrieved: '2024-05-19'
+    version: '2024-05-13'
   vtype: date
 - name: VEuPathDB Ontology
   prefix: eupath
@@ -9016,6 +9051,10 @@ database:
     version: '2024-05-15'
   - retrieved: '2024-05-18'
     version: '2024-05-16'
+  - retrieved: '2024-05-19'
+    version: '2024-05-17'
+  - retrieved: '2024-05-20'
+    version: '2024-05-18'
   vtype: date
 - name: Zebrafish Phenotype Ontology
   prefix: zp

{bioversions-0.5.376 → bioversions-0.5.378}/docs/failures.md

@@ -2,4 +2,5 @@
 
 - issue parsing Drug Gene Interaction Database: 
 - failed to resolve DisGeNet
-- failed to resolve Antibody Registry
+- failed to resolve Antibody Registry
+- failed to resolve Ensembl

{bioversions-0.5.376 → bioversions-0.5.378}/docs/img/has_release_url.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-05-18T00:49:20.715949</dc:date>
+    <dc:date>2024-05-20T00:51:10.725953</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.376 → bioversions-0.5.378}/docs/img/version_date_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-05-18T00:49:20.644752</dc:date>
+    <dc:date>2024-05-20T00:51:10.654457</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.376 → bioversions-0.5.378}/docs/img/version_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-05-18T00:49:20.536855</dc:date>
+    <dc:date>2024-05-20T00:51:10.545484</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.376 → bioversions-0.5.378}/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = bioversions
-version = 0.5.376
+version = 0.5.378
 description = What's the current version for each biological database?
 long_description = file: README.md
 long_description_content_type = text/markdown

{bioversions-0.5.376 → bioversions-0.5.378}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 677,
-    "date": "2024-05-18",
+    "revision": 679,
+    "date": "2024-05-20",
     "author": "runner"
   },
   "database": [
@@ -1172,6 +1172,10 @@
         {
           "retrieved": "2024-04-12",
           "version": "2024-04-05"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-15"
         }
       ],
       "prefix": "cl",
@@ -1952,6 +1956,10 @@
         {
           "retrieved": "2024-04-06",
           "version": "2024-03-29"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-13"
         }
       ],
       "name": "Compositional Dietary Nutrition Ontology",
@@ -3607,6 +3615,10 @@
         {
           "retrieved": "2024-04-19",
           "version": "3.65.0"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "3.66.0"
         }
       ],
       "vtype": "semver"
@@ -5853,6 +5865,10 @@
         {
           "retrieved": "2024-04-28",
           "version": "4.1.152"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "4.1.153"
         }
       ],
       "name": "Mass spectrometry ontology",
@@ -6038,6 +6054,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-02-05"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-07"
         }
       ],
       "vtype": "date"
@@ -7497,6 +7517,11 @@
           "retrieved": "2024-05-18",
           "version": "May 16, 2024",
           "date": "2024-05-16"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "May 17, 2024",
+          "date": "2024-05-17"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -7802,6 +7827,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-03-16"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-11"
         }
       ],
       "name": "Ontology for the Anatomy of the Insect SkeletoMuscular system",
@@ -7908,6 +7937,10 @@
         {
           "retrieved": "2024-03-31",
           "version": "2024-03-27"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-13"
         }
       ],
       "vtype": "date"
@@ -8247,6 +8280,10 @@
         {
           "retrieved": "2024-04-21",
           "version": "2.0.55"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2.0.56"
         }
       ],
       "name": "Ontology of units of Measure",
@@ -8365,6 +8402,10 @@
         {
           "retrieved": "2021-03-29",
           "version": "This ontology is the second version of the orthology ontology first published in 2015 and available at http://purl.bioontology.org/ontology/ORTH .\n@authors T.M. de Farias, H. Chiba, J.T. Fernandez-Breis, E. Antezana, D. Kuznetsov, C. Dessimoz and F. Villiers."
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2.0"
         }
       ],
       "name": "Orthology Ontology",
@@ -8837,6 +8878,10 @@
         {
           "retrieved": "2023-09-28",
           "version": "2023-07-25"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2017-11-06"
         }
       ],
       "name": "Plant Experimental Conditions Ontology",
@@ -9487,6 +9532,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-02-29"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-13"
         }
       ],
       "vtype": "date"
@@ -12544,6 +12593,14 @@
         {
           "retrieved": "2024-05-18",
           "version": "2024-05-18"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-19"
+        },
+        {
+          "retrieved": "2024-05-20",
+          "version": "2024-05-20"
         }
       ],
       "name": "SwissLipids",
@@ -12766,6 +12823,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-03-12"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-13"
         }
       ],
       "vtype": "date"
@@ -13106,6 +13167,10 @@
         {
           "retrieved": "2024-03-28",
           "version": "2024-03-22"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-13"
         }
       ],
       "name": "Uber Anatomy Ontology",
@@ -13532,6 +13597,10 @@
         {
           "retrieved": "2024-04-28",
           "version": "2024-04-23"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-13"
         }
       ],
       "vtype": "date"
@@ -16526,6 +16595,14 @@
         {
           "retrieved": "2024-05-18",
           "version": "2024-05-16"
+        },
+        {
+          "retrieved": "2024-05-19",
+          "version": "2024-05-17"
+        },
+        {
+          "retrieved": "2024-05-20",
+          "version": "2024-05-18"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.5.376 → bioversions-0.5.378}/src/bioversions/version.py

@@ -9,7 +9,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.5.376"
+VERSION = "0.5.378"
 
 
 def get_git_hash() -> str:

{bioversions-0.5.376 → bioversions-0.5.378/src/bioversions.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.376
+Version: 0.5.378
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases