bioversions 0.5.372__tar.gz → 0.5.374__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.372/src/bioversions.egg-info → bioversions-0.5.374}/PKG-INFO +1 -1
  2. {bioversions-0.5.372 → bioversions-0.5.374}/docs/_data/versions.yml +16 -2
  3. bioversions-0.5.374/docs/failures.md +5 -0
  4. {bioversions-0.5.372 → bioversions-0.5.374}/docs/img/has_release_url.svg +2 -2
  5. {bioversions-0.5.372 → bioversions-0.5.374}/docs/img/version_date_types.svg +2 -2
  6. {bioversions-0.5.372 → bioversions-0.5.374}/docs/img/version_types.svg +2 -2
  7. {bioversions-0.5.372 → bioversions-0.5.374}/setup.cfg +1 -1
  8. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/resources/versions.json +28 -2
  9. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.372 → bioversions-0.5.374/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.372/docs/failures.md +0 -6
  12. {bioversions-0.5.372 → bioversions-0.5.374}/LICENSE +0 -0
  13. {bioversions-0.5.372 → bioversions-0.5.374}/MANIFEST.in +0 -0
  14. {bioversions-0.5.372 → bioversions-0.5.374}/README.md +0 -0
  15. {bioversions-0.5.372 → bioversions-0.5.374}/docs/_config.yml +0 -0
  16. {bioversions-0.5.372 → bioversions-0.5.374}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.372 → bioversions-0.5.374}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.372 → bioversions-0.5.374}/docs/download.md +0 -0
  19. {bioversions-0.5.372 → bioversions-0.5.374}/docs/index.md +0 -0
  20. {bioversions-0.5.372 → bioversions-0.5.374}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.372 → bioversions-0.5.374}/docs/summary.md +0 -0
  22. {bioversions-0.5.372 → bioversions-0.5.374}/pyproject.toml +0 -0
  23. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.372 → bioversions-0.5.374}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.372 → bioversions-0.5.374}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.372
3
+ Version: 0.5.374
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-05-14'
4
- revision: 673
3
+ date: '2024-05-16'
4
+ revision: 675
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -4123,6 +4123,12 @@ database:
4123
4123
  - date: '2024-05-10'
4124
4124
  retrieved: '2024-05-12'
4125
4125
  version: May 10, 2024
4126
+ - date: '2024-05-13'
4127
+ retrieved: '2024-05-15'
4128
+ version: May 13, 2024
4129
+ - date: '2024-05-14'
4130
+ retrieved: '2024-05-16'
4131
+ version: May 14, 2024
4126
4132
  vtype: date
4127
4133
  - name: 'OntoAvida: ontology for Avida digital evolution platform'
4128
4134
  prefix: ontoavida
@@ -6786,6 +6792,10 @@ database:
6786
6792
  version: '2024-05-13'
6787
6793
  - retrieved: '2024-05-14'
6788
6794
  version: '2024-05-14'
6795
+ - retrieved: '2024-05-15'
6796
+ version: '2024-05-15'
6797
+ - retrieved: '2024-05-16'
6798
+ version: '2024-05-16'
6789
6799
  vtype: date
6790
6800
  - name: SWO (The Software Ontology)
6791
6801
  prefix: swo
@@ -8985,6 +8995,10 @@ database:
8985
8995
  version: '2024-05-11'
8986
8996
  - retrieved: '2024-05-14'
8987
8997
  version: '2024-05-12'
8998
+ - retrieved: '2024-05-15'
8999
+ version: '2024-05-13'
9000
+ - retrieved: '2024-05-16'
9001
+ version: '2024-05-14'
8988
9002
  vtype: date
8989
9003
  - name: Zebrafish Phenotype Ontology
8990
9004
  prefix: zp
@@ -0,0 +1,5 @@
1
+ # Errors
2
+
3
+ - issue parsing Drug Gene Interaction Database:
4
+ - failed to resolve DisGeNet
5
+ - failed to resolve Antibody Registry
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-14T00:50:43.956794</dc:date>
9
+ <dc:date>2024-05-16T00:50:19.788213</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.8.4, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.9.0, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-14T00:50:43.903300</dc:date>
9
+ <dc:date>2024-05-16T00:50:19.734429</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.8.4, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.9.0, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-14T00:50:43.820981</dc:date>
9
+ <dc:date>2024-05-16T00:50:19.634448</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.8.4, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.9.0, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.372
3
+ version = 0.5.374
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 673,
4
- "date": "2024-05-14",
3
+ "revision": 675,
4
+ "date": "2024-05-16",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -7472,6 +7472,16 @@
7472
7472
  "retrieved": "2024-05-12",
7473
7473
  "version": "May 10, 2024",
7474
7474
  "date": "2024-05-10"
7475
+ },
7476
+ {
7477
+ "retrieved": "2024-05-15",
7478
+ "version": "May 13, 2024",
7479
+ "date": "2024-05-13"
7480
+ },
7481
+ {
7482
+ "retrieved": "2024-05-16",
7483
+ "version": "May 14, 2024",
7484
+ "date": "2024-05-14"
7475
7485
  }
7476
7486
  ],
7477
7487
  "name": "Online Mendelian Inheritance in Man",
@@ -12503,6 +12513,14 @@
12503
12513
  {
12504
12514
  "retrieved": "2024-05-14",
12505
12515
  "version": "2024-05-14"
12516
+ },
12517
+ {
12518
+ "retrieved": "2024-05-15",
12519
+ "version": "2024-05-15"
12520
+ },
12521
+ {
12522
+ "retrieved": "2024-05-16",
12523
+ "version": "2024-05-16"
12506
12524
  }
12507
12525
  ],
12508
12526
  "name": "SwissLipids",
@@ -16469,6 +16487,14 @@
16469
16487
  {
16470
16488
  "retrieved": "2024-05-14",
16471
16489
  "version": "2024-05-12"
16490
+ },
16491
+ {
16492
+ "retrieved": "2024-05-15",
16493
+ "version": "2024-05-13"
16494
+ },
16495
+ {
16496
+ "retrieved": "2024-05-16",
16497
+ "version": "2024-05-14"
16472
16498
  }
16473
16499
  ],
16474
16500
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.372"
12
+ VERSION = "0.5.374"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.372
3
+ Version: 0.5.374
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,6 +0,0 @@
1
- # Errors
2
-
3
- - issue parsing Drug Gene Interaction Database:
4
- - failed to resolve DisGeNet
5
- - failed to resolve Antibody Registry
6
- - failed to resolve National Cancer Institute Thesaurus
File without changes
File without changes
File without changes