bioversions 0.5.371__tar.gz → 0.5.373__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.371/src/bioversions.egg-info → bioversions-0.5.373}/PKG-INFO +1 -1
  2. {bioversions-0.5.371 → bioversions-0.5.373}/docs/_data/versions.yml +19 -2
  3. bioversions-0.5.373/docs/failures.md +5 -0
  4. {bioversions-0.5.371 → bioversions-0.5.373}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.371 → bioversions-0.5.373}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.371 → bioversions-0.5.373}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.371 → bioversions-0.5.373}/setup.cfg +1 -1
  8. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/resources/versions.json +33 -2
  9. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.371 → bioversions-0.5.373/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.371/docs/failures.md +0 -6
  12. {bioversions-0.5.371 → bioversions-0.5.373}/LICENSE +0 -0
  13. {bioversions-0.5.371 → bioversions-0.5.373}/MANIFEST.in +0 -0
  14. {bioversions-0.5.371 → bioversions-0.5.373}/README.md +0 -0
  15. {bioversions-0.5.371 → bioversions-0.5.373}/docs/_config.yml +0 -0
  16. {bioversions-0.5.371 → bioversions-0.5.373}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.371 → bioversions-0.5.373}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.371 → bioversions-0.5.373}/docs/download.md +0 -0
  19. {bioversions-0.5.371 → bioversions-0.5.373}/docs/index.md +0 -0
  20. {bioversions-0.5.371 → bioversions-0.5.373}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.371 → bioversions-0.5.373}/docs/summary.md +0 -0
  22. {bioversions-0.5.371 → bioversions-0.5.373}/pyproject.toml +0 -0
  23. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.371 → bioversions-0.5.373}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.371 → bioversions-0.5.373}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.371
3
+ Version: 0.5.373
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-05-13'
4
- revision: 672
3
+ date: '2024-05-15'
4
+ revision: 674
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -1691,6 +1691,10 @@ database:
1691
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  homepage: https://www.ensembl.org
1692
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  retrieved: '2024-03-25'
1693
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  version: '111'
1694
+ - date: '2024-05-01'
1695
+ homepage: https://www.ensembl.org
1696
+ retrieved: '2024-05-14'
1697
+ version: '112'
1694
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  vtype: sequential
1695
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  - name: Ensembl Glossary
1696
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  prefix: ensemblglossary
@@ -4119,6 +4123,9 @@ database:
4119
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  - date: '2024-05-10'
4120
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  retrieved: '2024-05-12'
4121
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  version: May 10, 2024
4126
+ - date: '2024-05-13'
4127
+ retrieved: '2024-05-15'
4128
+ version: May 13, 2024
4122
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  vtype: date
4123
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
4124
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  prefix: ontoavida
@@ -5314,6 +5321,8 @@ database:
5314
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  version: '2024-04-26'
5315
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  - retrieved: '2024-05-07'
5316
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  version: '2024-05-03'
5324
+ - retrieved: '2024-05-14'
5325
+ version: '2024-05-10'
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  vtype: date
5318
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  - name: Rat Strain Ontology
5319
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  prefix: rs
@@ -6778,6 +6787,10 @@ database:
6778
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  version: '2024-05-12'
6779
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  - retrieved: '2024-05-13'
6780
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  version: '2024-05-13'
6790
+ - retrieved: '2024-05-14'
6791
+ version: '2024-05-14'
6792
+ - retrieved: '2024-05-15'
6793
+ version: '2024-05-15'
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  vtype: date
6782
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -8975,6 +8988,10 @@ database:
8975
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  version: '2024-05-10'
8976
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  - retrieved: '2024-05-13'
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  version: '2024-05-11'
8991
+ - retrieved: '2024-05-14'
8992
+ version: '2024-05-12'
8993
+ - retrieved: '2024-05-15'
8994
+ version: '2024-05-13'
8978
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  vtype: date
8979
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  - name: Zebrafish Phenotype Ontology
8980
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  prefix: zp
@@ -0,0 +1,5 @@
1
+ # Errors
2
+
3
+ - issue parsing Drug Gene Interaction Database:
4
+ - failed to resolve DisGeNet
5
+ - failed to resolve Antibody Registry
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-13T00:51:50.840903</dc:date>
9
+ <dc:date>2024-05-15T00:49:57.710854</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-05-13T00:51:50.770525</dc:date>
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+ <dc:date>2024-05-15T00:49:57.640609</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-13T00:51:50.663677</dc:date>
9
+ <dc:date>2024-05-15T00:49:57.533205</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
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  [metadata]
2
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  name = bioversions
3
- version = 0.5.371
3
+ version = 0.5.373
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 672,
4
- "date": "2024-05-13",
3
+ "revision": 674,
4
+ "date": "2024-05-15",
5
5
  "author": "runner"
6
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  },
7
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  "database": [
@@ -3059,6 +3059,12 @@
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  "version": "111",
3060
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  "homepage": "https://www.ensembl.org",
3061
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  "date": "2024-01-01"
3062
+ },
3063
+ {
3064
+ "retrieved": "2024-05-14",
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+ "version": "112",
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+ "homepage": "https://www.ensembl.org",
3067
+ "date": "2024-05-01"
3062
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  }
3063
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  ],
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  "name": "Ensembl",
@@ -7466,6 +7472,11 @@
7466
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  "retrieved": "2024-05-12",
7467
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  "version": "May 10, 2024",
7468
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  "date": "2024-05-10"
7475
+ },
7476
+ {
7477
+ "retrieved": "2024-05-15",
7478
+ "version": "May 13, 2024",
7479
+ "date": "2024-05-13"
7469
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  }
7470
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  ],
7471
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  "name": "Online Mendelian Inheritance in Man",
@@ -9641,6 +9652,10 @@
9641
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  {
9642
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  "retrieved": "2024-05-07",
9643
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  "version": "2024-05-03"
9655
+ },
9656
+ {
9657
+ "retrieved": "2024-05-14",
9658
+ "version": "2024-05-10"
9644
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  }
9645
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  ],
9646
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  "name": "Rat Genome Database",
@@ -12489,6 +12504,14 @@
12489
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  {
12490
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  "retrieved": "2024-05-13",
12491
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  "version": "2024-05-13"
12507
+ },
12508
+ {
12509
+ "retrieved": "2024-05-14",
12510
+ "version": "2024-05-14"
12511
+ },
12512
+ {
12513
+ "retrieved": "2024-05-15",
12514
+ "version": "2024-05-15"
12492
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  }
12493
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  ],
12494
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  "name": "SwissLipids",
@@ -16451,6 +16474,14 @@
16451
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  {
16452
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  "retrieved": "2024-05-13",
16453
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  "version": "2024-05-11"
16477
+ },
16478
+ {
16479
+ "retrieved": "2024-05-14",
16480
+ "version": "2024-05-12"
16481
+ },
16482
+ {
16483
+ "retrieved": "2024-05-15",
16484
+ "version": "2024-05-13"
16454
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  }
16455
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  ],
16456
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
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  ]
11
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12
- VERSION = "0.5.371"
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+ VERSION = "0.5.373"
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14
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15
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.371
3
+ Version: 0.5.373
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,6 +0,0 @@
1
- # Errors
2
-
3
- - issue parsing Drug Gene Interaction Database:
4
- - failed to resolve DisGeNet
5
- - failed to resolve Antibody Registry
6
- - failed to resolve National Cancer Institute Thesaurus
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