bioversions 0.5.369__tar.gz → 0.5.370__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.369/src/bioversions.egg-info → bioversions-0.5.370}/PKG-INFO +1 -1
  2. {bioversions-0.5.369 → bioversions-0.5.370}/docs/_data/versions.yml +19 -2
  3. {bioversions-0.5.369 → bioversions-0.5.370}/docs/failures.md +1 -2
  4. {bioversions-0.5.369 → bioversions-0.5.370}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.369 → bioversions-0.5.370}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.369 → bioversions-0.5.370}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.369 → bioversions-0.5.370}/setup.cfg +1 -1
  8. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/resources/versions.json +35 -2
  9. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.369 → bioversions-0.5.370/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.369 → bioversions-0.5.370}/LICENSE +0 -0
  12. {bioversions-0.5.369 → bioversions-0.5.370}/MANIFEST.in +0 -0
  13. {bioversions-0.5.369 → bioversions-0.5.370}/README.md +0 -0
  14. {bioversions-0.5.369 → bioversions-0.5.370}/docs/_config.yml +0 -0
  15. {bioversions-0.5.369 → bioversions-0.5.370}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.369 → bioversions-0.5.370}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.369 → bioversions-0.5.370}/docs/download.md +0 -0
  18. {bioversions-0.5.369 → bioversions-0.5.370}/docs/index.md +0 -0
  19. {bioversions-0.5.369 → bioversions-0.5.370}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.369 → bioversions-0.5.370}/docs/summary.md +0 -0
  21. {bioversions-0.5.369 → bioversions-0.5.370}/pyproject.toml +0 -0
  22. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/civic.py +0 -0
  39. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.369 → bioversions-0.5.370}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.369 → bioversions-0.5.370}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.369
3
+ Version: 0.5.370
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-05-11'
4
- revision: 670
3
+ date: '2024-05-12'
4
+ revision: 671
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -919,6 +919,8 @@ database:
919
919
  version: '2.208'
920
920
  - retrieved: '2024-05-05'
921
921
  version: '2.209'
922
+ - retrieved: '2024-05-12'
923
+ version: '2.210'
922
924
  vtype: date
923
925
  - name: Clinical Trials Ontology
924
926
  prefix: cto
@@ -1898,6 +1900,8 @@ database:
1898
1900
  version: '4.164'
1899
1901
  - retrieved: '2024-05-05'
1900
1902
  version: '4.165'
1903
+ - retrieved: '2024-05-12'
1904
+ version: '4.166'
1901
1905
  vtype: date
1902
1906
  - name: Experimental Factor Ontology
1903
1907
  prefix: efo
@@ -2102,6 +2106,8 @@ database:
2102
2106
  version: '2024-04-15'
2103
2107
  - retrieved: '2024-05-05'
2104
2108
  version: '2024-04-27'
2109
+ - retrieved: '2024-05-12'
2110
+ version: '2024-05-08'
2105
2111
  vtype: date
2106
2112
  - name: Flora Phenotype Ontology
2107
2113
  prefix: flopo
@@ -3609,6 +3615,8 @@ database:
3609
3615
  version: '2024-03-04'
3610
3616
  - retrieved: '2024-04-06'
3611
3617
  version: '2024-04-02'
3618
+ - retrieved: '2024-05-12'
3619
+ version: '2024-05-08'
3612
3620
  vtype: date
3613
3621
  - name: MOP
3614
3622
  prefix: mop
@@ -3844,6 +3852,8 @@ database:
3844
3852
  version: '2024-02-28'
3845
3853
  - retrieved: '2024-03-30'
3846
3854
  version: '2024-03-26'
3855
+ - retrieved: '2024-05-12'
3856
+ version: '2024-05-08'
3847
3857
  vtype: date
3848
3858
  - name: NCI Thesaurus
3849
3859
  prefix: ncit
@@ -4106,6 +4116,9 @@ database:
4106
4116
  - date: '2024-05-09'
4107
4117
  retrieved: '2024-05-11'
4108
4118
  version: May 9, 2024
4119
+ - date: '2024-05-10'
4120
+ retrieved: '2024-05-12'
4121
+ version: May 10, 2024
4109
4122
  vtype: date
4110
4123
  - name: 'OntoAvida: ontology for Avida digital evolution platform'
4111
4124
  prefix: ontoavida
@@ -6761,6 +6774,8 @@ database:
6761
6774
  version: '2024-05-10'
6762
6775
  - retrieved: '2024-05-11'
6763
6776
  version: '2024-05-11'
6777
+ - retrieved: '2024-05-12'
6778
+ version: '2024-05-12'
6764
6779
  vtype: date
6765
6780
  - name: SWO (The Software Ontology)
6766
6781
  prefix: swo
@@ -8954,6 +8969,8 @@ database:
8954
8969
  version: '2024-05-07'
8955
8970
  - retrieved: '2024-05-11'
8956
8971
  version: '2024-05-09'
8972
+ - retrieved: '2024-05-12'
8973
+ version: '2024-05-10'
8957
8974
  vtype: date
8958
8975
  - name: Zebrafish Phenotype Ontology
8959
8976
  prefix: zp
@@ -2,5 +2,4 @@
2
2
 
3
3
  - issue parsing Drug Gene Interaction Database:
4
4
  - failed to resolve DisGeNet
5
- - failed to resolve Antibody Registry
6
- - failed to resolve Ensembl
5
+ - failed to resolve Antibody Registry
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-11T00:48:41.826111</dc:date>
9
+ <dc:date>2024-05-12T00:53:54.832706</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-11T00:48:41.756836</dc:date>
9
+ <dc:date>2024-05-12T00:53:54.762116</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-05-11T00:48:41.650464</dc:date>
9
+ <dc:date>2024-05-12T00:53:54.655635</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.369
3
+ version = 0.5.370
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 670,
4
- "date": "2024-05-11",
3
+ "revision": 671,
4
+ "date": "2024-05-12",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -1682,6 +1682,10 @@
1682
1682
  {
1683
1683
  "retrieved": "2024-05-05",
1684
1684
  "version": "2.209"
1685
+ },
1686
+ {
1687
+ "retrieved": "2024-05-12",
1688
+ "version": "2.210"
1685
1689
  }
1686
1690
  ],
1687
1691
  "vtype": "date"
@@ -3458,6 +3462,10 @@
3458
3462
  {
3459
3463
  "retrieved": "2024-05-05",
3460
3464
  "version": "4.165"
3465
+ },
3466
+ {
3467
+ "retrieved": "2024-05-12",
3468
+ "version": "4.166"
3461
3469
  }
3462
3470
  ],
3463
3471
  "vtype": "date"
@@ -3861,6 +3869,10 @@
3861
3869
  {
3862
3870
  "retrieved": "2024-05-05",
3863
3871
  "version": "2024-04-27"
3872
+ },
3873
+ {
3874
+ "retrieved": "2024-05-12",
3875
+ "version": "2024-05-08"
3864
3876
  }
3865
3877
  ],
3866
3878
  "vtype": "date"
@@ -6559,6 +6571,10 @@
6559
6571
  {
6560
6572
  "retrieved": "2024-04-06",
6561
6573
  "version": "2024-04-02"
6574
+ },
6575
+ {
6576
+ "retrieved": "2024-05-12",
6577
+ "version": "2024-05-08"
6562
6578
  }
6563
6579
  ],
6564
6580
  "vtype": "date"
@@ -6975,6 +6991,10 @@
6975
6991
  {
6976
6992
  "retrieved": "2024-03-30",
6977
6993
  "version": "2024-03-26"
6994
+ },
6995
+ {
6996
+ "retrieved": "2024-05-12",
6997
+ "version": "2024-05-08"
6978
6998
  }
6979
6999
  ],
6980
7000
  "name": "NCBI Taxonomy",
@@ -7441,6 +7461,11 @@
7441
7461
  "retrieved": "2024-05-11",
7442
7462
  "version": "May 9, 2024",
7443
7463
  "date": "2024-05-09"
7464
+ },
7465
+ {
7466
+ "retrieved": "2024-05-12",
7467
+ "version": "May 10, 2024",
7468
+ "date": "2024-05-10"
7444
7469
  }
7445
7470
  ],
7446
7471
  "name": "Online Mendelian Inheritance in Man",
@@ -12456,6 +12481,10 @@
12456
12481
  {
12457
12482
  "retrieved": "2024-05-11",
12458
12483
  "version": "2024-05-11"
12484
+ },
12485
+ {
12486
+ "retrieved": "2024-05-12",
12487
+ "version": "2024-05-12"
12459
12488
  }
12460
12489
  ],
12461
12490
  "name": "SwissLipids",
@@ -16410,6 +16439,10 @@
16410
16439
  {
16411
16440
  "retrieved": "2024-05-11",
16412
16441
  "version": "2024-05-09"
16442
+ },
16443
+ {
16444
+ "retrieved": "2024-05-12",
16445
+ "version": "2024-05-10"
16413
16446
  }
16414
16447
  ],
16415
16448
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.369"
12
+ VERSION = "0.5.370"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.369
3
+ Version: 0.5.370
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
File without changes
File without changes
File without changes