bioversions 0.5.359__tar.gz → 0.5.361__tar.gz

{bioversions-0.5.359/src/bioversions.egg-info → bioversions-0.5.361}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.359
+Version: 0.5.361
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases

{bioversions-0.5.359 → bioversions-0.5.361}/docs/_data/versions.yml

@@ -1,7 +1,7 @@
 annotations:
   author: runner
-  date: '2024-05-01'
-  revision: 660
+  date: '2024-05-03'
+  revision: 662
 database:
 - name: A nomenclatural ontology for biological names
   prefix: nomen
@@ -331,6 +331,9 @@ database:
   - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.232
     retrieved: '2024-04-02'
     version: 4.4.232
+  - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.233
+    retrieved: '2024-05-02'
+    version: 4.4.233
   vtype: semver
 - name: Bioinformatics operations, data types, formats, identifiers and topics
   prefix: edam
@@ -649,6 +652,9 @@ database:
   - date: '2024-01-30'
     retrieved: '2024-03-25'
     version: '48.0'
+  - date: '2024-05-02'
+    retrieved: '2024-05-03'
+    version: '49.0'
   vtype: sequential
 - name: Cellular Microscopy Phenotype Ontology
   prefix: cmpo
@@ -751,6 +757,9 @@ database:
   - homepage: ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel232/
     retrieved: '2024-04-02'
     version: '232'
+  - homepage: ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel233/
+    retrieved: '2024-05-02'
+    version: '233'
   vtype: sequential
 - name: ChEBI Integrated Role Ontology
   prefix: chiro
@@ -3096,6 +3105,9 @@ database:
   - date: '2024-04-01'
     retrieved: '2024-03-31'
     version: '110.0'
+  - date: '2024-05-01'
+    retrieved: '2024-05-02'
+    version: '110.1'
   vtype: semver_minor
 - name: Kinetic Simulation Algorithm Ontology
   prefix: biomodels.kisao
@@ -4056,6 +4068,12 @@ database:
   - date: '2024-04-29'
     retrieved: '2024-05-01'
     version: April 29, 2024
+  - date: '2024-04-30'
+    retrieved: '2024-05-02'
+    version: April 30, 2024
+  - date: '2024-05-01'
+    retrieved: '2024-05-03'
+    version: May 1, 2024
   vtype: date
 - name: 'OntoAvida: ontology for Avida digital evolution platform'
   prefix: ontoavida
@@ -4934,6 +4952,10 @@ database:
     homepage: https://www.pombase.org/data/releases/pombase-2024-04-01/
     retrieved: '2024-04-11'
     version: '2024-04-01'
+  - date: '2024-05-01'
+    homepage: https://www.pombase.org/data/releases/pombase-2024-05-01/
+    retrieved: '2024-05-02'
+    version: '2024-05-01'
   vtype: date
 - name: Population and Community Ontology
   prefix: pco
@@ -6680,6 +6702,10 @@ database:
     version: '2024-04-30'
   - retrieved: '2024-05-01'
     version: '2024-05-01'
+  - retrieved: '2024-05-02'
+    version: '2024-05-02'
+  - retrieved: '2024-05-03'
+    version: '2024-05-03'
   vtype: date
 - name: SWO (The Software Ontology)
   prefix: swo
@@ -8847,6 +8873,10 @@ database:
     version: '2024-04-28'
   - retrieved: '2024-05-01'
     version: '2024-04-29'
+  - retrieved: '2024-05-02'
+    version: '2024-04-30'
+  - retrieved: '2024-05-03'
+    version: '2024-05-01'
   vtype: date
 - name: Zebrafish Phenotype Ontology
   prefix: zp

{bioversions-0.5.359 → bioversions-0.5.361}/docs/failures.md

@@ -2,5 +2,4 @@
 
 - issue parsing Drug Gene Interaction Database: 
 - failed to resolve DisGeNet
-- failed to resolve Antibody Registry
-- failed to resolve Ensembl
+- failed to resolve Antibody Registry

{bioversions-0.5.359 → bioversions-0.5.361}/docs/img/has_release_url.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-05-01T00:53:09.250031</dc:date>
+    <dc:date>2024-05-03T00:51:48.787614</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.359 → bioversions-0.5.361}/docs/img/version_date_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-05-01T00:53:09.175574</dc:date>
+    <dc:date>2024-05-03T00:51:48.734392</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.359 → bioversions-0.5.361}/docs/img/version_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-05-01T00:53:09.068331</dc:date>
+    <dc:date>2024-05-03T00:51:48.652894</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.359 → bioversions-0.5.361}/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = bioversions
-version = 0.5.359
+version = 0.5.361
 description = What's the current version for each biological database?
 long_description = file: README.md
 long_description_content_type = text/markdown

{bioversions-0.5.359 → bioversions-0.5.361}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 660,
-    "date": "2024-05-01",
+    "revision": 662,
+    "date": "2024-05-03",
     "author": "runner"
   },
   "database": [
@@ -602,6 +602,11 @@
           "retrieved": "2024-04-02",
           "version": "4.4.232",
           "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.232"
+        },
+        {
+          "retrieved": "2024-05-02",
+          "version": "4.4.233",
+          "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.233"
         }
       ],
       "vtype": "semver"
@@ -1208,6 +1213,11 @@
           "retrieved": "2024-03-25",
           "version": "48.0",
           "date": "2024-01-30"
+        },
+        {
+          "retrieved": "2024-05-03",
+          "version": "49.0",
+          "date": "2024-05-02"
         }
       ],
       "name": "Cellosaurus",
@@ -1383,6 +1393,11 @@
           "retrieved": "2024-04-02",
           "version": "232",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel232/"
+        },
+        {
+          "retrieved": "2024-05-02",
+          "version": "233",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel233/"
         }
       ],
       "vtype": "sequential"
@@ -5604,6 +5619,11 @@
           "retrieved": "2024-03-31",
           "version": "110.0",
           "date": "2024-04-01"
+        },
+        {
+          "retrieved": "2024-05-02",
+          "version": "110.1",
+          "date": "2024-05-01"
         }
       ],
       "vtype": "semver_minor"
@@ -7353,6 +7373,16 @@
           "retrieved": "2024-05-01",
           "version": "April 29, 2024",
           "date": "2024-04-29"
+        },
+        {
+          "retrieved": "2024-05-02",
+          "version": "April 30, 2024",
+          "date": "2024-04-30"
+        },
+        {
+          "retrieved": "2024-05-03",
+          "version": "May 1, 2024",
+          "date": "2024-05-01"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -8941,6 +8971,12 @@
           "version": "2024-04-01",
           "homepage": "https://www.pombase.org/data/releases/pombase-2024-04-01/",
           "date": "2024-04-01"
+        },
+        {
+          "retrieved": "2024-05-02",
+          "version": "2024-05-01",
+          "homepage": "https://www.pombase.org/data/releases/pombase-2024-05-01/",
+          "date": "2024-05-01"
         }
       ],
       "name": "PomBase",
@@ -12309,6 +12345,14 @@
         {
           "retrieved": "2024-05-01",
           "version": "2024-05-01"
+        },
+        {
+          "retrieved": "2024-05-02",
+          "version": "2024-05-02"
+        },
+        {
+          "retrieved": "2024-05-03",
+          "version": "2024-05-03"
         }
       ],
       "name": "SwissLipids",
@@ -16213,6 +16257,14 @@
         {
           "retrieved": "2024-05-01",
           "version": "2024-04-29"
+        },
+        {
+          "retrieved": "2024-05-02",
+          "version": "2024-04-30"
+        },
+        {
+          "retrieved": "2024-05-03",
+          "version": "2024-05-01"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.5.359 → bioversions-0.5.361}/src/bioversions/sources/chembl.py

@@ -23,6 +23,7 @@ class ChEMBLGetter(Getter):
     homepage_fmt = "ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_{version}"
     date_fmt = "%d/%m/%Y"
     version_type = VersionType.sequential
+    collection = ["chembl", "chembl.target", "chembl.compound", "chembl.cell"]
 
     def get(self):
         """Get the latest ChEMBL version number."""

{bioversions-0.5.359 → bioversions-0.5.361}/src/bioversions/sources/kegg.py

@@ -5,6 +5,7 @@
 from typing import Mapping
 
 from bioversions.utils import Getter, VersionType, get_soup
+import bioregistry
 
 __all__ = [
     "KEGGGetter",
@@ -19,7 +20,7 @@ class KEGGGetter(Getter):
     name = "KEGG"
     date_fmt = "%B %d, %Y"
     version_type = VersionType.semver_minor
-    collection = ["kegg.pathway", "kegg.gene", "kegg.species"]  # TODO add more
+    collection = ["kegg", *bioregistry.get_has_parts("kegg")]
 
     def get(self) -> Mapping[str, str]:
         """Get the latest KEGG version number."""

{bioversions-0.5.359 → bioversions-0.5.361}/src/bioversions/version.py

@@ -9,7 +9,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.5.359"
+VERSION = "0.5.361"
 
 
 def get_git_hash() -> str:

{bioversions-0.5.359 → bioversions-0.5.361/src/bioversions.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.359
+Version: 0.5.361
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases