bioversions 0.5.345__tar.gz → 0.5.347__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.345/src/bioversions.egg-info → bioversions-0.5.347}/PKG-INFO +1 -1
  2. {bioversions-0.5.345 → bioversions-0.5.347}/docs/_data/versions.yml +29 -2
  3. {bioversions-0.5.345 → bioversions-0.5.347}/docs/failures.md +1 -1
  4. {bioversions-0.5.345 → bioversions-0.5.347}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.345 → bioversions-0.5.347}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.345 → bioversions-0.5.347}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.345 → bioversions-0.5.347}/setup.cfg +1 -1
  8. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/resources/versions.json +53 -2
  9. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.345 → bioversions-0.5.347/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.345 → bioversions-0.5.347}/LICENSE +0 -0
  12. {bioversions-0.5.345 → bioversions-0.5.347}/MANIFEST.in +0 -0
  13. {bioversions-0.5.345 → bioversions-0.5.347}/README.md +0 -0
  14. {bioversions-0.5.345 → bioversions-0.5.347}/docs/_config.yml +0 -0
  15. {bioversions-0.5.345 → bioversions-0.5.347}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.345 → bioversions-0.5.347}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.345 → bioversions-0.5.347}/docs/download.md +0 -0
  18. {bioversions-0.5.345 → bioversions-0.5.347}/docs/index.md +0 -0
  19. {bioversions-0.5.345 → bioversions-0.5.347}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.345 → bioversions-0.5.347}/docs/summary.md +0 -0
  21. {bioversions-0.5.345 → bioversions-0.5.347}/pyproject.toml +0 -0
  22. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/civic.py +0 -0
  39. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.345 → bioversions-0.5.347}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.345 → bioversions-0.5.347}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.1
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  Name: bioversions
3
- Version: 0.5.345
3
+ Version: 0.5.347
4
4
  Summary: What's the current version for each biological database?
5
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
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  author: runner
3
- date: '2024-04-17'
4
- revision: 646
3
+ date: '2024-04-19'
4
+ revision: 648
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  database:
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -1861,6 +1861,8 @@ database:
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  version: '4.161'
1862
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  - retrieved: '2024-04-12'
1863
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  version: '4.162'
1864
+ - retrieved: '2024-04-19'
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+ version: '4.163'
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  vtype: date
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  - name: Experimental Factor Ontology
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  prefix: efo
@@ -1927,6 +1929,8 @@ database:
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  version: 3.60.0
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  - retrieved: '2024-03-25'
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  version: 3.64.0
1932
+ - retrieved: '2024-04-19'
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+ version: 3.65.0
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  vtype: semver
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  - name: Exposure ontology
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  prefix: exo
@@ -2059,6 +2063,8 @@ database:
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  version: '2024-03-30'
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  - retrieved: '2024-04-13'
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  version: '2024-04-09'
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+ - retrieved: '2024-04-19'
2067
+ version: '2024-04-15'
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  vtype: date
2063
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  - name: Flora Phenotype Ontology
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  prefix: flopo
@@ -2551,6 +2557,9 @@ database:
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  - homepage: http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-03-01.json
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  retrieved: '2024-03-25'
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  version: '2024-03-01'
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+ - homepage: http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-04-01.json
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+ retrieved: '2024-04-18'
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+ version: '2024-04-01'
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  vtype: date
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  - name: Histopathology Ontology
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  prefix: hpath
@@ -3142,6 +3151,8 @@ database:
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  version: 4.1.134
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  - retrieved: '2024-03-25'
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  version: 4.1.141
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+ - retrieved: '2024-04-18'
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+ version: 4.1.146
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  vtype: date
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  - name: Mathematical modeling ontology
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  prefix: mamo
@@ -3184,6 +3195,8 @@ database:
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  version: '2.129'
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  - retrieved: '2024-04-06'
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  version: '2.130'
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+ - retrieved: '2024-04-19'
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+ version: '2.131'
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  vtype: date
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  - name: Medaka Developmental Stages
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  prefix: olatdv
@@ -3967,6 +3980,12 @@ database:
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  - date: '2024-04-15'
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  retrieved: '2024-04-17'
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  version: April 15, 2024
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+ - date: '2024-04-16'
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+ retrieved: '2024-04-18'
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+ version: April 16, 2024
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+ - date: '2024-04-17'
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+ retrieved: '2024-04-19'
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+ version: April 17, 2024
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  vtype: date
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
@@ -6550,6 +6569,10 @@ database:
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  version: '2024-04-16'
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  - retrieved: '2024-04-17'
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  version: '2024-04-17'
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+ - retrieved: '2024-04-18'
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+ version: '2024-04-18'
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+ - retrieved: '2024-04-19'
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+ version: '2024-04-19'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -8685,6 +8708,10 @@ database:
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  version: '2024-04-14'
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  - retrieved: '2024-04-17'
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  version: '2024-04-15'
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+ - retrieved: '2024-04-18'
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+ version: '2024-04-16'
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+ - retrieved: '2024-04-19'
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+ version: '2024-04-17'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -4,4 +4,4 @@
4
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  - failed to resolve DisGeNet
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  - failed to resolve Antibody Registry
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  - failed to resolve Ensembl
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- - failed to resolve MeSH
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+ - failed to resolve PathBank
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-04-17T00:50:31.670764</dc:date>
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+ <dc:date>2024-04-19T00:47:42.635961</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-04-17T00:50:31.614165</dc:date>
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+ <dc:date>2024-04-19T00:47:42.567586</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-04-17T00:50:31.524606</dc:date>
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+ <dc:date>2024-04-19T00:47:42.461247</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
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  [metadata]
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  name = bioversions
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- version = 0.5.345
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+ version = 0.5.347
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  description = What's the current version for each biological database?
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  long_description = file: README.md
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
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  {
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  "annotations": {
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- "revision": 646,
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- "date": "2024-04-17",
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+ "revision": 648,
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+ "date": "2024-04-19",
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  "author": "runner"
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  },
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  "database": [
@@ -3389,6 +3389,10 @@
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  {
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  "retrieved": "2024-04-12",
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  "version": "4.162"
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+ },
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+ {
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+ "retrieved": "2024-04-19",
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+ "version": "4.163"
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  }
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  ],
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  "vtype": "date"
@@ -3520,6 +3524,10 @@
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  {
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  "retrieved": "2024-03-25",
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  "version": "3.64.0"
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+ },
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+ {
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+ "retrieved": "2024-04-19",
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+ "version": "3.65.0"
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  }
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  ],
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  "vtype": "semver"
@@ -3780,6 +3788,10 @@
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  {
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  "retrieved": "2024-04-13",
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  "version": "2024-04-09"
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+ },
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+ {
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+ "retrieved": "2024-04-19",
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+ "version": "2024-04-15"
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  }
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  ],
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  "vtype": "date"
@@ -4641,6 +4653,11 @@
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  "retrieved": "2024-03-25",
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  "version": "2024-03-01",
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  "homepage": "http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-03-01.json"
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+ },
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+ {
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+ "retrieved": "2024-04-18",
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+ "version": "2024-04-01",
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+ "homepage": "http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-04-01.json"
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  }
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  ],
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  "name": "HGNC",
@@ -5691,6 +5708,10 @@
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  {
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  "retrieved": "2024-03-25",
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  "version": "4.1.141"
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+ },
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+ {
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+ "retrieved": "2024-04-18",
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+ "version": "4.1.146"
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  }
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  ],
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  "name": "Mass spectrometry ontology",
@@ -5774,6 +5795,10 @@
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  {
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  "retrieved": "2024-04-06",
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  "version": "2.130"
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+ },
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+ {
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+ "retrieved": "2024-04-19",
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+ "version": "2.131"
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  }
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  ],
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  "vtype": "date"
@@ -7194,6 +7219,16 @@
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  "retrieved": "2024-04-17",
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  "version": "April 15, 2024",
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  "date": "2024-04-15"
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+ },
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+ {
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+ "retrieved": "2024-04-18",
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+ "version": "April 16, 2024",
7226
+ "date": "2024-04-16"
7227
+ },
7228
+ {
7229
+ "retrieved": "2024-04-19",
7230
+ "version": "April 17, 2024",
7231
+ "date": "2024-04-17"
7197
7232
  }
7198
7233
  ],
7199
7234
  "name": "Online Mendelian Inheritance in Man",
@@ -12069,6 +12104,14 @@
12069
12104
  {
12070
12105
  "retrieved": "2024-04-17",
12071
12106
  "version": "2024-04-17"
12107
+ },
12108
+ {
12109
+ "retrieved": "2024-04-18",
12110
+ "version": "2024-04-18"
12111
+ },
12112
+ {
12113
+ "retrieved": "2024-04-19",
12114
+ "version": "2024-04-19"
12072
12115
  }
12073
12116
  ],
12074
12117
  "name": "SwissLipids",
@@ -15909,6 +15952,14 @@
15909
15952
  {
15910
15953
  "retrieved": "2024-04-17",
15911
15954
  "version": "2024-04-15"
15955
+ },
15956
+ {
15957
+ "retrieved": "2024-04-18",
15958
+ "version": "2024-04-16"
15959
+ },
15960
+ {
15961
+ "retrieved": "2024-04-19",
15962
+ "version": "2024-04-17"
15912
15963
  }
15913
15964
  ],
15914
15965
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.345"
12
+ VERSION = "0.5.347"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.345
3
+ Version: 0.5.347
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
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