bioversions 0.5.345__tar.gz → 0.5.346__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.345/src/bioversions.egg-info → bioversions-0.5.346}/PKG-INFO +1 -1
  2. {bioversions-0.5.345 → bioversions-0.5.346}/docs/_data/versions.yml +14 -2
  3. {bioversions-0.5.345 → bioversions-0.5.346}/docs/failures.md +0 -1
  4. {bioversions-0.5.345 → bioversions-0.5.346}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.345 → bioversions-0.5.346}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.345 → bioversions-0.5.346}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.345 → bioversions-0.5.346}/setup.cfg +1 -1
  8. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/resources/versions.json +24 -2
  9. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.345 → bioversions-0.5.346/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.345 → bioversions-0.5.346}/LICENSE +0 -0
  12. {bioversions-0.5.345 → bioversions-0.5.346}/MANIFEST.in +0 -0
  13. {bioversions-0.5.345 → bioversions-0.5.346}/README.md +0 -0
  14. {bioversions-0.5.345 → bioversions-0.5.346}/docs/_config.yml +0 -0
  15. {bioversions-0.5.345 → bioversions-0.5.346}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.345 → bioversions-0.5.346}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.345 → bioversions-0.5.346}/docs/download.md +0 -0
  18. {bioversions-0.5.345 → bioversions-0.5.346}/docs/index.md +0 -0
  19. {bioversions-0.5.345 → bioversions-0.5.346}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.345 → bioversions-0.5.346}/docs/summary.md +0 -0
  21. {bioversions-0.5.345 → bioversions-0.5.346}/pyproject.toml +0 -0
  22. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/civic.py +0 -0
  39. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.345 → bioversions-0.5.346}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.345 → bioversions-0.5.346}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.345
3
+ Version: 0.5.346
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-04-17'
4
- revision: 646
3
+ date: '2024-04-18'
4
+ revision: 647
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -2551,6 +2551,9 @@ database:
2551
2551
  - homepage: http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-03-01.json
2552
2552
  retrieved: '2024-03-25'
2553
2553
  version: '2024-03-01'
2554
+ - homepage: http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-04-01.json
2555
+ retrieved: '2024-04-18'
2556
+ version: '2024-04-01'
2554
2557
  vtype: date
2555
2558
  - name: Histopathology Ontology
2556
2559
  prefix: hpath
@@ -3142,6 +3145,8 @@ database:
3142
3145
  version: 4.1.134
3143
3146
  - retrieved: '2024-03-25'
3144
3147
  version: 4.1.141
3148
+ - retrieved: '2024-04-18'
3149
+ version: 4.1.146
3145
3150
  vtype: date
3146
3151
  - name: Mathematical modeling ontology
3147
3152
  prefix: mamo
@@ -3967,6 +3972,9 @@ database:
3967
3972
  - date: '2024-04-15'
3968
3973
  retrieved: '2024-04-17'
3969
3974
  version: April 15, 2024
3975
+ - date: '2024-04-16'
3976
+ retrieved: '2024-04-18'
3977
+ version: April 16, 2024
3970
3978
  vtype: date
3971
3979
  - name: 'OntoAvida: ontology for Avida digital evolution platform'
3972
3980
  prefix: ontoavida
@@ -6550,6 +6558,8 @@ database:
6550
6558
  version: '2024-04-16'
6551
6559
  - retrieved: '2024-04-17'
6552
6560
  version: '2024-04-17'
6561
+ - retrieved: '2024-04-18'
6562
+ version: '2024-04-18'
6553
6563
  vtype: date
6554
6564
  - name: SWO (The Software Ontology)
6555
6565
  prefix: swo
@@ -8685,6 +8695,8 @@ database:
8685
8695
  version: '2024-04-14'
8686
8696
  - retrieved: '2024-04-17'
8687
8697
  version: '2024-04-15'
8698
+ - retrieved: '2024-04-18'
8699
+ version: '2024-04-16'
8688
8700
  vtype: date
8689
8701
  - name: Zebrafish Phenotype Ontology
8690
8702
  prefix: zp
@@ -3,5 +3,4 @@
3
3
  - issue parsing Drug Gene Interaction Database:
4
4
  - failed to resolve DisGeNet
5
5
  - failed to resolve Antibody Registry
6
- - failed to resolve Ensembl
7
6
  - failed to resolve MeSH
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-17T00:50:31.670764</dc:date>
9
+ <dc:date>2024-04-18T00:48:44.363822</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-17T00:50:31.614165</dc:date>
9
+ <dc:date>2024-04-18T00:48:44.311344</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-17T00:50:31.524606</dc:date>
9
+ <dc:date>2024-04-18T00:48:44.229609</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.345
3
+ version = 0.5.346
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 646,
4
- "date": "2024-04-17",
3
+ "revision": 647,
4
+ "date": "2024-04-18",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -4641,6 +4641,11 @@
4641
4641
  "retrieved": "2024-03-25",
4642
4642
  "version": "2024-03-01",
4643
4643
  "homepage": "http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-03-01.json"
4644
+ },
4645
+ {
4646
+ "retrieved": "2024-04-18",
4647
+ "version": "2024-04-01",
4648
+ "homepage": "http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/json/hgnc_complete_set_2024-04-01.json"
4644
4649
  }
4645
4650
  ],
4646
4651
  "name": "HGNC",
@@ -5691,6 +5696,10 @@
5691
5696
  {
5692
5697
  "retrieved": "2024-03-25",
5693
5698
  "version": "4.1.141"
5699
+ },
5700
+ {
5701
+ "retrieved": "2024-04-18",
5702
+ "version": "4.1.146"
5694
5703
  }
5695
5704
  ],
5696
5705
  "name": "Mass spectrometry ontology",
@@ -7194,6 +7203,11 @@
7194
7203
  "retrieved": "2024-04-17",
7195
7204
  "version": "April 15, 2024",
7196
7205
  "date": "2024-04-15"
7206
+ },
7207
+ {
7208
+ "retrieved": "2024-04-18",
7209
+ "version": "April 16, 2024",
7210
+ "date": "2024-04-16"
7197
7211
  }
7198
7212
  ],
7199
7213
  "name": "Online Mendelian Inheritance in Man",
@@ -12069,6 +12083,10 @@
12069
12083
  {
12070
12084
  "retrieved": "2024-04-17",
12071
12085
  "version": "2024-04-17"
12086
+ },
12087
+ {
12088
+ "retrieved": "2024-04-18",
12089
+ "version": "2024-04-18"
12072
12090
  }
12073
12091
  ],
12074
12092
  "name": "SwissLipids",
@@ -15909,6 +15927,10 @@
15909
15927
  {
15910
15928
  "retrieved": "2024-04-17",
15911
15929
  "version": "2024-04-15"
15930
+ },
15931
+ {
15932
+ "retrieved": "2024-04-18",
15933
+ "version": "2024-04-16"
15912
15934
  }
15913
15935
  ],
15914
15936
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.345"
12
+ VERSION = "0.5.346"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.345
3
+ Version: 0.5.346
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
File without changes
File without changes
File without changes