bioversions 0.5.338__tar.gz → 0.5.339__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. {bioversions-0.5.338/src/bioversions.egg-info → bioversions-0.5.339}/PKG-INFO +1 -1
  2. {bioversions-0.5.338 → bioversions-0.5.339}/docs/_data/versions.yml +17 -2
  3. bioversions-0.5.339/docs/failures.md +5 -0
  4. {bioversions-0.5.338 → bioversions-0.5.339}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.338 → bioversions-0.5.339}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.338 → bioversions-0.5.339}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.338 → bioversions-0.5.339}/setup.cfg +1 -1
  8. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/resources/versions.json +27 -2
  9. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.338 → bioversions-0.5.339/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.338/docs/failures.md +0 -7
  12. {bioversions-0.5.338 → bioversions-0.5.339}/LICENSE +0 -0
  13. {bioversions-0.5.338 → bioversions-0.5.339}/MANIFEST.in +0 -0
  14. {bioversions-0.5.338 → bioversions-0.5.339}/README.md +0 -0
  15. {bioversions-0.5.338 → bioversions-0.5.339}/docs/_config.yml +0 -0
  16. {bioversions-0.5.338 → bioversions-0.5.339}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.338 → bioversions-0.5.339}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.338 → bioversions-0.5.339}/docs/download.md +0 -0
  19. {bioversions-0.5.338 → bioversions-0.5.339}/docs/index.md +0 -0
  20. {bioversions-0.5.338 → bioversions-0.5.339}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.338 → bioversions-0.5.339}/docs/summary.md +0 -0
  22. {bioversions-0.5.338 → bioversions-0.5.339}/pyproject.toml +0 -0
  23. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/civic.py +0 -0
  40. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/icd10.py +0 -0
  54. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/icd11.py +0 -0
  55. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/icf.py +0 -0
  56. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/intact.py +0 -0
  57. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/interpro.py +0 -0
  58. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/itis.py +0 -0
  59. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/kegg.py +0 -0
  60. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/mesh.py +0 -0
  61. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/mgi.py +0 -0
  62. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/mirbase.py +0 -0
  63. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/moalmanac.py +0 -0
  64. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/msigdb.py +0 -0
  65. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/ncit.py +0 -0
  66. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/npass.py +0 -0
  67. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/obo.py +0 -0
  68. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/ols.py +0 -0
  69. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/omim.py +0 -0
  70. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/oncotree.py +0 -0
  71. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/pathbank.py +0 -0
  72. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/pathwaycommons.py +0 -0
  73. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/pfam.py +0 -0
  74. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/pombase.py +0 -0
  75. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/pr.py +0 -0
  76. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/pubchem.py +0 -0
  77. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/reactome.py +0 -0
  78. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/rfam.py +0 -0
  79. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/rgd.py +0 -0
  80. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/rhea.py +0 -0
  81. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/rxnorm.py +0 -0
  82. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/sgd.py +0 -0
  83. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/slm.py +0 -0
  84. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/stringdb.py +0 -0
  85. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/umls.py +0 -0
  86. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/uniprot.py +0 -0
  87. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/unversioned.py +0 -0
  88. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/wikipathways.py +0 -0
  89. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/sources/zfin.py +0 -0
  90. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/templates/base.html +0 -0
  91. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/templates/home.html +0 -0
  92. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/twitter_client.py +0 -0
  93. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/utils.py +0 -0
  94. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions/wsgi.py +0 -0
  95. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions.egg-info/SOURCES.txt +0 -0
  96. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions.egg-info/dependency_links.txt +0 -0
  97. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions.egg-info/entry_points.txt +0 -0
  98. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions.egg-info/not-zip-safe +0 -0
  99. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions.egg-info/requires.txt +0 -0
  100. {bioversions-0.5.338 → bioversions-0.5.339}/src/bioversions.egg-info/top_level.txt +0 -0
  101. {bioversions-0.5.338 → bioversions-0.5.339}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.338
3
+ Version: 0.5.339
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-04-10'
4
- revision: 639
3
+ date: '2024-04-11'
4
+ revision: 640
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -3929,6 +3929,9 @@ database:
3929
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  - date: '2024-04-08'
3930
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  retrieved: '2024-04-10'
3931
3931
  version: April 8, 2024
3932
+ - date: '2024-04-09'
3933
+ retrieved: '2024-04-11'
3934
+ version: April 9, 2024
3932
3935
  vtype: date
3933
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
3934
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  prefix: ontoavida
@@ -4799,6 +4802,10 @@ database:
4799
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  homepage: https://www.pombase.org/data/releases/pombase-2024-03-01/
4800
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  retrieved: '2024-03-25'
4801
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  version: '2024-03-01'
4805
+ - date: '2024-04-01'
4806
+ homepage: https://www.pombase.org/data/releases/pombase-2024-04-01/
4807
+ retrieved: '2024-04-11'
4808
+ version: '2024-04-01'
4802
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  vtype: date
4803
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  - name: Population and Community Ontology
4804
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  prefix: pco
@@ -6492,6 +6499,8 @@ database:
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  version: '2024-04-09'
6493
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  - retrieved: '2024-04-10'
6494
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  version: '2024-04-10'
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+ - retrieved: '2024-04-11'
6503
+ version: '2024-04-11'
6495
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  vtype: date
6496
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  - name: SWO (The Software Ontology)
6497
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  prefix: swo
@@ -7185,6 +7194,10 @@ database:
7185
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  homepage: http://data.wikipathways.org/20240310/
7186
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  retrieved: '2024-03-25'
7187
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  version: '20240310'
7197
+ - date: '2024-04-10'
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+ homepage: http://data.wikipathways.org/20240410/
7199
+ retrieved: '2024-04-11'
7200
+ version: '20240410'
7188
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  vtype: date
7189
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  - name: Woody Plant Ontology ontology
7190
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  prefix: co_357
@@ -8607,6 +8620,8 @@ database:
8607
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  version: '2024-04-07'
8608
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  - retrieved: '2024-04-10'
8609
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  version: '2024-04-08'
8623
+ - retrieved: '2024-04-11'
8624
+ version: '2024-04-09'
8610
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  vtype: date
8611
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  - name: Zebrafish Phenotype Ontology
8612
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  prefix: zp
@@ -0,0 +1,5 @@
1
+ # Errors
2
+
3
+ - issue parsing Drug Gene Interaction Database:
4
+ - failed to resolve DisGeNet
5
+ - failed to resolve Antibody Registry
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-10T00:47:12.705859</dc:date>
9
+ <dc:date>2024-04-11T00:47:15.237896</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-04-10T00:47:12.635161</dc:date>
9
+ <dc:date>2024-04-11T00:47:15.185847</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-10T00:47:12.526061</dc:date>
9
+ <dc:date>2024-04-11T00:47:15.104471</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
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  name = bioversions
3
- version = 0.5.338
3
+ version = 0.5.339
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
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  {
2
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  "annotations": {
3
- "revision": 639,
4
- "date": "2024-04-10",
3
+ "revision": 640,
4
+ "date": "2024-04-11",
5
5
  "author": "runner"
6
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  },
7
7
  "database": [
@@ -7128,6 +7128,11 @@
7128
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  "retrieved": "2024-04-10",
7129
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  "version": "April 8, 2024",
7130
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  "date": "2024-04-08"
7131
+ },
7132
+ {
7133
+ "retrieved": "2024-04-11",
7134
+ "version": "April 9, 2024",
7135
+ "date": "2024-04-09"
7131
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  }
7132
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  ],
7133
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  "name": "Online Mendelian Inheritance in Man",
@@ -8702,6 +8707,12 @@
8702
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  "version": "2024-03-01",
8703
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  "homepage": "https://www.pombase.org/data/releases/pombase-2024-03-01/",
8704
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  "date": "2024-03-01"
8710
+ },
8711
+ {
8712
+ "retrieved": "2024-04-11",
8713
+ "version": "2024-04-01",
8714
+ "homepage": "https://www.pombase.org/data/releases/pombase-2024-04-01/",
8715
+ "date": "2024-04-01"
8705
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  }
8706
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  ],
8707
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  "name": "PomBase",
@@ -11965,6 +11976,10 @@
11965
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  {
11966
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  "retrieved": "2024-04-10",
11967
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  "version": "2024-04-10"
11979
+ },
11980
+ {
11981
+ "retrieved": "2024-04-11",
11982
+ "version": "2024-04-11"
11968
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  }
11969
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  ],
11970
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  "name": "SwissLipids",
@@ -13212,6 +13227,12 @@
13212
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  "version": "20240310",
13213
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  "homepage": "http://data.wikipathways.org/20240310/",
13214
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  "date": "2024-03-10"
13230
+ },
13231
+ {
13232
+ "retrieved": "2024-04-11",
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+ "version": "20240410",
13234
+ "homepage": "http://data.wikipathways.org/20240410/",
13235
+ "date": "2024-04-10"
13215
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  }
13216
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  ],
13217
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  "vtype": "date"
@@ -15767,6 +15788,10 @@
15767
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  {
15768
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  "retrieved": "2024-04-10",
15769
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  "version": "2024-04-08"
15791
+ },
15792
+ {
15793
+ "retrieved": "2024-04-11",
15794
+ "version": "2024-04-09"
15770
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  }
15771
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  ],
15772
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
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  ]
11
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12
- VERSION = "0.5.338"
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+ VERSION = "0.5.339"
13
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14
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15
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.338
3
+ Version: 0.5.339
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +0,0 @@
1
- # Errors
2
-
3
- - issue parsing Drug Gene Interaction Database:
4
- - failed to resolve DisGeNet
5
- - failed to resolve Antibody Registry
6
- - failed to resolve Ensembl
7
- - failed to resolve Reactome
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