bioversions 0.5.331__tar.gz → 0.5.333__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.331/src/bioversions.egg-info → bioversions-0.5.333}/PKG-INFO +1 -1
  2. {bioversions-0.5.331 → bioversions-0.5.333}/docs/_data/versions.yml +16 -2
  3. {bioversions-0.5.331 → bioversions-0.5.333}/docs/failures.md +2 -1
  4. {bioversions-0.5.331 → bioversions-0.5.333}/docs/img/has_release_url.svg +2 -2
  5. {bioversions-0.5.331 → bioversions-0.5.333}/docs/img/version_date_types.svg +2 -2
  6. {bioversions-0.5.331 → bioversions-0.5.333}/docs/img/version_types.svg +2 -2
  7. {bioversions-0.5.331 → bioversions-0.5.333}/setup.cfg +1 -1
  8. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/resources/versions.json +28 -2
  9. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.331 → bioversions-0.5.333/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.331 → bioversions-0.5.333}/LICENSE +0 -0
  12. {bioversions-0.5.331 → bioversions-0.5.333}/MANIFEST.in +0 -0
  13. {bioversions-0.5.331 → bioversions-0.5.333}/README.md +0 -0
  14. {bioversions-0.5.331 → bioversions-0.5.333}/docs/_config.yml +0 -0
  15. {bioversions-0.5.331 → bioversions-0.5.333}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.331 → bioversions-0.5.333}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.331 → bioversions-0.5.333}/docs/download.md +0 -0
  18. {bioversions-0.5.331 → bioversions-0.5.333}/docs/index.md +0 -0
  19. {bioversions-0.5.331 → bioversions-0.5.333}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.331 → bioversions-0.5.333}/docs/summary.md +0 -0
  21. {bioversions-0.5.331 → bioversions-0.5.333}/pyproject.toml +0 -0
  22. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/civic.py +0 -0
  39. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.331 → bioversions-0.5.333}/tests/test_bioversions.py +0 -0
{bioversions-0.5.331/src/bioversions.egg-info → bioversions-0.5.333}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.331
3
+ Version: 0.5.333
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.331 → bioversions-0.5.333}/docs/_data/versions.yml RENAMED
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-04-03'
4
- revision: 632
3
+ date: '2024-04-05'
4
+ revision: 634
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -3886,6 +3886,12 @@ database:
3886
3886
  - date: '2024-04-01'
3887
3887
  retrieved: '2024-04-03'
3888
3888
  version: April 1, 2024
3889
+ - date: '2024-04-02'
3890
+ retrieved: '2024-04-04'
3891
+ version: April 2, 2024
3892
+ - date: '2024-04-03'
3893
+ retrieved: '2024-04-05'
3894
+ version: April 3, 2024
3889
3895
  vtype: date
3890
3896
  - name: 'OntoAvida: ontology for Avida digital evolution platform'
3891
3897
  prefix: ontoavida
@@ -6429,6 +6435,10 @@ database:
6429
6435
  version: '2024-04-02'
6430
6436
  - retrieved: '2024-04-03'
6431
6437
  version: '2024-04-03'
6438
+ - retrieved: '2024-04-04'
6439
+ version: '2024-04-04'
6440
+ - retrieved: '2024-04-05'
6441
+ version: '2024-04-05'
6432
6442
  vtype: date
6433
6443
  - name: SWO (The Software Ontology)
6434
6444
  prefix: swo
@@ -8528,6 +8538,10 @@ database:
8528
8538
  version: '2024-03-31'
8529
8539
  - retrieved: '2024-04-03'
8530
8540
  version: '2024-04-01'
8541
+ - retrieved: '2024-04-04'
8542
+ version: '2024-04-02'
8543
+ - retrieved: '2024-04-05'
8544
+ version: '2024-04-03'
8531
8545
  vtype: date
8532
8546
  - name: Zebrafish Phenotype Ontology
8533
8547
  prefix: zp
{bioversions-0.5.331 → bioversions-0.5.333}/docs/failures.md RENAMED
@@ -2,4 +2,5 @@
2
2
 
3
3
  - issue parsing Drug Gene Interaction Database:
4
4
  - failed to resolve DisGeNet
5
- - failed to resolve Antibody Registry
5
+ - failed to resolve Antibody Registry
6
+ - failed to resolve NPASS
{bioversions-0.5.331 → bioversions-0.5.333}/docs/img/has_release_url.svg RENAMED
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-03T00:45:37.521351</dc:date>
9
+ <dc:date>2024-04-05T00:46:54.562288</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.8.3, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.8.4, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
{bioversions-0.5.331 → bioversions-0.5.333}/docs/img/version_date_types.svg RENAMED
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-03T00:45:37.451248</dc:date>
9
+ <dc:date>2024-04-05T00:46:54.507236</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.8.3, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.8.4, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
{bioversions-0.5.331 → bioversions-0.5.333}/docs/img/version_types.svg RENAMED
@@ -6,11 +6,11 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-04-03T00:45:37.343693</dc:date>
9
+ <dc:date>2024-04-05T00:46:54.408970</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
13
- <dc:title>Matplotlib v3.8.3, https://matplotlib.org/</dc:title>
13
+ <dc:title>Matplotlib v3.8.4, https://matplotlib.org/</dc:title>
14
14
  </cc:Agent>
15
15
  </dc:creator>
16
16
  </cc:Work>
{bioversions-0.5.331 → bioversions-0.5.333}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.331
3
+ version = 0.5.333
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
{bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/resources/versions.json RENAMED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 632,
4
- "date": "2024-04-03",
3
+ "revision": 634,
4
+ "date": "2024-04-05",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -7049,6 +7049,16 @@
7049
7049
  "retrieved": "2024-04-03",
7050
7050
  "version": "April 1, 2024",
7051
7051
  "date": "2024-04-01"
7052
+ },
7053
+ {
7054
+ "retrieved": "2024-04-04",
7055
+ "version": "April 2, 2024",
7056
+ "date": "2024-04-02"
7057
+ },
7058
+ {
7059
+ "retrieved": "2024-04-05",
7060
+ "version": "April 3, 2024",
7061
+ "date": "2024-04-03"
7052
7062
  }
7053
7063
  ],
7054
7064
  "name": "Online Mendelian Inheritance in Man",
@@ -11846,6 +11856,14 @@
11846
11856
  {
11847
11857
  "retrieved": "2024-04-03",
11848
11858
  "version": "2024-04-03"
11859
+ },
11860
+ {
11861
+ "retrieved": "2024-04-04",
11862
+ "version": "2024-04-04"
11863
+ },
11864
+ {
11865
+ "retrieved": "2024-04-05",
11866
+ "version": "2024-04-05"
11849
11867
  }
11850
11868
  ],
11851
11869
  "name": "SwissLipids",
@@ -15616,6 +15634,14 @@
15616
15634
  {
15617
15635
  "retrieved": "2024-04-03",
15618
15636
  "version": "2024-04-01"
15637
+ },
15638
+ {
15639
+ "retrieved": "2024-04-04",
15640
+ "version": "2024-04-02"
15641
+ },
15642
+ {
15643
+ "retrieved": "2024-04-05",
15644
+ "version": "2024-04-03"
15619
15645
  }
15620
15646
  ],
15621
15647
  "name": "Zebrafish Information Network",
{bioversions-0.5.331 → bioversions-0.5.333}/src/bioversions/version.py RENAMED
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.331"
12
+ VERSION = "0.5.333"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
{bioversions-0.5.331 → bioversions-0.5.333/src/bioversions.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.331
3
+ Version: 0.5.333
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.331 → bioversions-0.5.333}/LICENSE RENAMED
File without changes
{bioversions-0.5.331 → bioversions-0.5.333}/MANIFEST.in RENAMED
File without changes
{bioversions-0.5.331 → bioversions-0.5.333}/README.md RENAMED
File without changes