bioversions 0.5.329__tar.gz → 0.5.330__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {bioversions-0.5.329/src/bioversions.egg-info → bioversions-0.5.330}/PKG-INFO +1 -1
  2. {bioversions-0.5.329 → bioversions-0.5.330}/docs/_data/versions.yml +17 -2
  3. bioversions-0.5.330/docs/failures.md +5 -0
  4. {bioversions-0.5.329 → bioversions-0.5.330}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.329 → bioversions-0.5.330}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.329 → bioversions-0.5.330}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.329 → bioversions-0.5.330}/setup.cfg +1 -1
  8. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/resources/versions.json +29 -2
  9. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.329 → bioversions-0.5.330/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.329/docs/failures.md +0 -6
  12. {bioversions-0.5.329 → bioversions-0.5.330}/LICENSE +0 -0
  13. {bioversions-0.5.329 → bioversions-0.5.330}/MANIFEST.in +0 -0
  14. {bioversions-0.5.329 → bioversions-0.5.330}/README.md +0 -0
  15. {bioversions-0.5.329 → bioversions-0.5.330}/docs/_config.yml +0 -0
  16. {bioversions-0.5.329 → bioversions-0.5.330}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.329 → bioversions-0.5.330}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.329 → bioversions-0.5.330}/docs/download.md +0 -0
  19. {bioversions-0.5.329 → bioversions-0.5.330}/docs/index.md +0 -0
  20. {bioversions-0.5.329 → bioversions-0.5.330}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.329 → bioversions-0.5.330}/docs/summary.md +0 -0
  22. {bioversions-0.5.329 → bioversions-0.5.330}/pyproject.toml +0 -0
  23. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/biogrid.py +0 -0
  35. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/cellosaurus.py +0 -0
  36. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/chebi.py +0 -0
  37. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/chembl.py +0 -0
  38. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/chemidplus.py +0 -0
  39. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/complexportal.py +0 -0
  40. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/daily.py +0 -0
  41. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/depmap.py +0 -0
  42. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/dgi.py +0 -0
  43. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/disgenet.py +0 -0
  44. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/drugbank.py +0 -0
  45. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/drugcentral.py +0 -0
  46. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/ensembl.py +0 -0
  47. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/expasy.py +0 -0
  48. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/flybase.py +0 -0
  49. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/guidetopharmacology.py +0 -0
  50. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/hgnc.py +0 -0
  51. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/homologene.py +0 -0
  52. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/icd10.py +0 -0
  53. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/icd11.py +0 -0
  54. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/icf.py +0 -0
  55. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/intact.py +0 -0
  56. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/interpro.py +0 -0
  57. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/itis.py +0 -0
  58. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/kegg.py +0 -0
  59. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/mesh.py +0 -0
  60. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/mgi.py +0 -0
  61. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/mirbase.py +0 -0
  62. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/moalmanac.py +0 -0
  63. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/msigdb.py +0 -0
  64. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/ncit.py +0 -0
  65. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/npass.py +0 -0
  66. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/obo.py +0 -0
  67. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/ols.py +0 -0
  68. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/omim.py +0 -0
  69. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/oncotree.py +0 -0
  70. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/pathbank.py +0 -0
  71. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/pathwaycommons.py +0 -0
  72. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/pfam.py +0 -0
  73. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/pombase.py +0 -0
  74. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/pr.py +0 -0
  75. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/pubchem.py +0 -0
  76. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/reactome.py +0 -0
  77. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/rfam.py +0 -0
  78. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/rgd.py +0 -0
  79. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/rhea.py +0 -0
  80. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/rxnorm.py +0 -0
  81. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/sgd.py +0 -0
  82. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/slm.py +0 -0
  83. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/stringdb.py +0 -0
  84. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/umls.py +0 -0
  85. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/uniprot.py +0 -0
  86. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/unversioned.py +0 -0
  87. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/wikipathways.py +0 -0
  88. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/sources/zfin.py +0 -0
  89. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/templates/base.html +0 -0
  90. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/templates/home.html +0 -0
  91. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/twitter_client.py +0 -0
  92. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/utils.py +0 -0
  93. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions/wsgi.py +0 -0
  94. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions.egg-info/SOURCES.txt +0 -0
  95. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions.egg-info/dependency_links.txt +0 -0
  96. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions.egg-info/entry_points.txt +0 -0
  97. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions.egg-info/not-zip-safe +0 -0
  98. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions.egg-info/requires.txt +0 -0
  99. {bioversions-0.5.329 → bioversions-0.5.330}/src/bioversions.egg-info/top_level.txt +0 -0
  100. {bioversions-0.5.329 → bioversions-0.5.330}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.329
3
+ Version: 0.5.330
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-04-01'
4
- revision: 630
3
+ date: '2024-04-02'
4
+ revision: 631
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
7
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  prefix: nomen
@@ -324,6 +324,9 @@ database:
324
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  - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.231
325
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  retrieved: '2024-03-25'
326
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  version: 4.4.231
327
+ - homepage: https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.232
328
+ retrieved: '2024-04-02'
329
+ version: 4.4.232
327
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  vtype: semver
328
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  - name: Bioinformatics operations, data types, formats, identifiers and topics
329
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  prefix: edam
@@ -733,6 +736,9 @@ database:
733
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  - homepage: ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel231/
734
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  retrieved: '2024-03-25'
735
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  version: '231'
739
+ - homepage: ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel232/
740
+ retrieved: '2024-04-02'
741
+ version: '232'
736
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  vtype: sequential
737
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  - name: ChEBI Integrated Role Ontology
738
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  prefix: chiro
@@ -5038,6 +5044,8 @@ database:
5038
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  version: '2024-03-25'
5039
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  - retrieved: '2024-03-27'
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  version: '2024-03-26'
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+ - retrieved: '2024-04-02'
5048
+ version: '2024-03-22'
5041
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  vtype: date
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  - name: Rat Strain Ontology
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  prefix: rs
@@ -5323,6 +5331,9 @@ database:
5323
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  - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_03042024.zip
5324
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  retrieved: '2024-03-25'
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  version: '2024-03-04'
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+ - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_04012024.zip
5335
+ retrieved: '2024-04-02'
5336
+ version: '2024-04-01'
5326
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  vtype: date
5327
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  - name: Saccharomyces Genome Database
5328
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  prefix: sgd
@@ -6406,6 +6417,8 @@ database:
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  version: '2024-03-31'
6407
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  - retrieved: '2024-04-01'
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  version: '2024-04-01'
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+ - retrieved: '2024-04-02'
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+ version: '2024-04-02'
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  vtype: date
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  - name: SWO (The Software Ontology)
6411
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  prefix: swo
@@ -8501,6 +8514,8 @@ database:
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  version: '2024-03-29'
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  - retrieved: '2024-04-01'
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  version: '2024-03-30'
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+ - retrieved: '2024-04-02'
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+ version: '2024-03-31'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -0,0 +1,5 @@
1
+ # Errors
2
+
3
+ - issue parsing Drug Gene Interaction Database:
4
+ - failed to resolve DisGeNet
5
+ - failed to resolve Antibody Registry
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-04-01T00:52:39.428457</dc:date>
9
+ <dc:date>2024-04-02T00:49:21.282893</dc:date>
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-04-01T00:52:39.355945</dc:date>
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+ <dc:date>2024-04-02T00:49:21.230264</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-04-01T00:52:39.246205</dc:date>
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+ <dc:date>2024-04-02T00:49:21.148252</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
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  [metadata]
2
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  name = bioversions
3
- version = 0.5.329
3
+ version = 0.5.330
4
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  description = What's the current version for each biological database?
5
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  long_description = file: README.md
6
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
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  {
2
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  "annotations": {
3
- "revision": 630,
4
- "date": "2024-04-01",
3
+ "revision": 631,
4
+ "date": "2024-04-02",
5
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  "author": "runner"
6
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  },
7
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  "database": [
@@ -589,6 +589,11 @@
589
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  "retrieved": "2024-03-25",
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  "version": "4.4.231",
591
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  "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.231"
592
+ },
593
+ {
594
+ "retrieved": "2024-04-02",
595
+ "version": "4.4.232",
596
+ "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.232"
592
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  }
593
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  ],
594
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  "vtype": "semver"
@@ -1349,6 +1354,11 @@
1349
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  "retrieved": "2024-03-25",
1350
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  "version": "231",
1351
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  "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel231/"
1357
+ },
1358
+ {
1359
+ "retrieved": "2024-04-02",
1360
+ "version": "232",
1361
+ "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel232/"
1352
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  }
1353
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  ],
1354
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  "vtype": "sequential"
@@ -9146,6 +9156,10 @@
9146
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  {
9147
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  "retrieved": "2024-03-27",
9148
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  "version": "2024-03-26"
9159
+ },
9160
+ {
9161
+ "retrieved": "2024-04-02",
9162
+ "version": "2024-03-22"
9149
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  }
9150
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  ],
9151
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  "name": "Rat Genome Database",
@@ -9659,6 +9673,11 @@
9659
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  "retrieved": "2024-03-25",
9660
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  "version": "2024-03-04",
9661
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  "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_03042024.zip"
9676
+ },
9677
+ {
9678
+ "retrieved": "2024-04-02",
9679
+ "version": "2024-04-01",
9680
+ "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_04012024.zip"
9662
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  }
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  ],
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  "name": "RxNorm",
@@ -11804,6 +11823,10 @@
11804
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  {
11805
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  "retrieved": "2024-04-01",
11806
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  "version": "2024-04-01"
11826
+ },
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+ {
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+ "retrieved": "2024-04-02",
11829
+ "version": "2024-04-02"
11807
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  }
11808
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  ],
11809
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  "name": "SwissLipids",
@@ -15566,6 +15589,10 @@
15566
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  {
15567
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  "retrieved": "2024-04-01",
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  "version": "2024-03-30"
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+ },
15593
+ {
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+ "retrieved": "2024-04-02",
15595
+ "version": "2024-03-31"
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  }
15570
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  ],
15571
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
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  ]
11
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12
- VERSION = "0.5.329"
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+ VERSION = "0.5.330"
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14
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.329
3
+ Version: 0.5.330
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,6 +0,0 @@
1
- # Errors
2
-
3
- - issue parsing Drug Gene Interaction Database:
4
- - failed to resolve DisGeNet
5
- - failed to resolve Antibody Registry
6
- - failed to resolve National Cancer Institute Thesaurus
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