bioversions 0.5.326__tar.gz → 0.5.327__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. {bioversions-0.5.326/src/bioversions.egg-info → bioversions-0.5.327}/PKG-INFO +1 -1
  2. {bioversions-0.5.326 → bioversions-0.5.327}/docs/_data/versions.yml +21 -2
  3. {bioversions-0.5.326 → bioversions-0.5.327}/docs/failures.md +1 -1
  4. {bioversions-0.5.326 → bioversions-0.5.327}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.326 → bioversions-0.5.327}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.326 → bioversions-0.5.327}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.326 → bioversions-0.5.327}/setup.cfg +1 -1
  8. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/resources/versions.json +37 -2
  9. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.326 → bioversions-0.5.327/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.326 → bioversions-0.5.327}/LICENSE +0 -0
  12. {bioversions-0.5.326 → bioversions-0.5.327}/MANIFEST.in +0 -0
  13. {bioversions-0.5.326 → bioversions-0.5.327}/README.md +0 -0
  14. {bioversions-0.5.326 → bioversions-0.5.327}/docs/_config.yml +0 -0
  15. {bioversions-0.5.326 → bioversions-0.5.327}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.326 → bioversions-0.5.327}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.326 → bioversions-0.5.327}/docs/download.md +0 -0
  18. {bioversions-0.5.326 → bioversions-0.5.327}/docs/index.md +0 -0
  19. {bioversions-0.5.326 → bioversions-0.5.327}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.326 → bioversions-0.5.327}/docs/summary.md +0 -0
  21. {bioversions-0.5.326 → bioversions-0.5.327}/pyproject.toml +0 -0
  22. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/complexportal.py +0 -0
  39. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/daily.py +0 -0
  40. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/depmap.py +0 -0
  41. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/dgi.py +0 -0
  42. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/disgenet.py +0 -0
  43. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/drugbank.py +0 -0
  44. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/drugcentral.py +0 -0
  45. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/ensembl.py +0 -0
  46. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/expasy.py +0 -0
  47. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/flybase.py +0 -0
  48. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/guidetopharmacology.py +0 -0
  49. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/hgnc.py +0 -0
  50. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/homologene.py +0 -0
  51. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/icd10.py +0 -0
  52. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/icd11.py +0 -0
  53. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/icf.py +0 -0
  54. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/intact.py +0 -0
  55. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/interpro.py +0 -0
  56. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/itis.py +0 -0
  57. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/kegg.py +0 -0
  58. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/mesh.py +0 -0
  59. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/mgi.py +0 -0
  60. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/mirbase.py +0 -0
  61. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/moalmanac.py +0 -0
  62. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/msigdb.py +0 -0
  63. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/ncit.py +0 -0
  64. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/npass.py +0 -0
  65. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/obo.py +0 -0
  66. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/ols.py +0 -0
  67. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/omim.py +0 -0
  68. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/oncotree.py +0 -0
  69. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/pathbank.py +0 -0
  70. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/pathwaycommons.py +0 -0
  71. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/pfam.py +0 -0
  72. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/pombase.py +0 -0
  73. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/pr.py +0 -0
  74. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/pubchem.py +0 -0
  75. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/reactome.py +0 -0
  76. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/rfam.py +0 -0
  77. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/rgd.py +0 -0
  78. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/rhea.py +0 -0
  79. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/rxnorm.py +0 -0
  80. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/sgd.py +0 -0
  81. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/slm.py +0 -0
  82. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/stringdb.py +0 -0
  83. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/umls.py +0 -0
  84. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/uniprot.py +0 -0
  85. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/unversioned.py +0 -0
  86. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/wikipathways.py +0 -0
  87. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/sources/zfin.py +0 -0
  88. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/templates/base.html +0 -0
  89. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/templates/home.html +0 -0
  90. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/twitter_client.py +0 -0
  91. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/utils.py +0 -0
  92. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions/wsgi.py +0 -0
  93. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions.egg-info/SOURCES.txt +0 -0
  94. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions.egg-info/dependency_links.txt +0 -0
  95. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions.egg-info/entry_points.txt +0 -0
  96. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions.egg-info/not-zip-safe +0 -0
  97. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions.egg-info/requires.txt +0 -0
  98. {bioversions-0.5.326 → bioversions-0.5.327}/src/bioversions.egg-info/top_level.txt +0 -0
  99. {bioversions-0.5.326 → bioversions-0.5.327}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.326
3
+ Version: 0.5.327
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2024-03-29'
4
- revision: 627
3
+ date: '2024-03-30'
4
+ revision: 628
5
5
  database:
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  - name: A nomenclatural ontology for biological names
7
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  prefix: nomen
@@ -2014,6 +2014,8 @@ database:
2014
2014
  version: '2023-11-13'
2015
2015
  - retrieved: '2024-03-25'
2016
2016
  version: '2024-03-20'
2017
+ - retrieved: '2024-03-30'
2018
+ version: '2024-03-26'
2017
2019
  vtype: date
2018
2020
  - name: Flora Phenotype Ontology
2019
2021
  prefix: flopo
@@ -2879,6 +2881,10 @@ database:
2879
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  homepage: ftp://ftp.ebi.ac.uk/pub/databases/interpro/98.0/
2880
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  retrieved: '2024-03-25'
2881
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  version: '98.0'
2884
+ - date: '2024-03-28'
2885
+ homepage: ftp://ftp.ebi.ac.uk/pub/databases/interpro/99.0/
2886
+ retrieved: '2024-03-30'
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+ version: '99.0'
2882
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  vtype: semver_minor
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  - name: ITIS
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  prefix: itis
@@ -3687,6 +3693,8 @@ database:
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  version: '2023-09-19'
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  - retrieved: '2024-03-25'
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  version: '2024-02-28'
3696
+ - retrieved: '2024-03-30'
3697
+ version: '2024-03-26'
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  vtype: date
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  - name: NCI Thesaurus
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  prefix: ncit
@@ -3853,6 +3861,9 @@ database:
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  - date: '2024-03-27'
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  retrieved: '2024-03-29'
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  version: March 27, 2024
3864
+ - date: '2024-03-28'
3865
+ retrieved: '2024-03-30'
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+ version: March 28, 2024
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  vtype: date
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  - name: 'OntoAvida: ontology for Avida digital evolution platform'
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  prefix: ontoavida
@@ -4257,6 +4268,8 @@ database:
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  version: 2.0.51
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  - retrieved: '2024-03-29'
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  version: 2.0.52
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+ - retrieved: '2024-03-30'
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+ version: 2.0.53
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  vtype: semver
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  - name: Ontology of units of Measure (OM)
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  prefix: om
@@ -6374,6 +6387,8 @@ database:
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  version: '2024-03-27'
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  - retrieved: '2024-03-29'
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  version: '2024-03-28'
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+ - retrieved: '2024-03-30'
6391
+ version: '2024-03-29'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -6890,6 +6905,8 @@ database:
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  version: '2019-06-07'
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  - retrieved: '2024-03-25'
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  version: '2024-03-08'
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+ - retrieved: '2024-03-30'
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+ version: '2024-03-22'
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  vtype: date
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  - name: VEuPathDB Ontology
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  prefix: eupath
@@ -8461,6 +8478,8 @@ database:
8461
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  version: '2024-03-26'
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  - retrieved: '2024-03-29'
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  version: '2024-03-27'
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+ - retrieved: '2024-03-30'
8482
+ version: '2024-03-28'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
8466
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  prefix: zp
@@ -3,4 +3,4 @@
3
3
  - issue parsing Drug Gene Interaction Database:
4
4
  - failed to resolve DisGeNet
5
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  - failed to resolve Antibody Registry
6
- - failed to resolve PathBank
6
+ - failed to resolve NPASS
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2024-03-29T00:46:01.126664</dc:date>
9
+ <dc:date>2024-03-30T00:44:17.079039</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-03-29T00:46:01.057473</dc:date>
9
+ <dc:date>2024-03-30T00:44:17.010179</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2024-03-29T00:46:00.951153</dc:date>
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+ <dc:date>2024-03-30T00:44:16.903952</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
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  [metadata]
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  name = bioversions
3
- version = 0.5.326
3
+ version = 0.5.327
4
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  description = What's the current version for each biological database?
5
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  long_description = file: README.md
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
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  {
2
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  "annotations": {
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- "revision": 627,
4
- "date": "2024-03-29",
3
+ "revision": 628,
4
+ "date": "2024-03-30",
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  "author": "runner"
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  },
7
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  "database": [
@@ -3694,6 +3694,10 @@
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  {
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  "retrieved": "2024-03-25",
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  "version": "2024-03-20"
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+ },
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+ {
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+ "retrieved": "2024-03-30",
3700
+ "version": "2024-03-26"
3697
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  }
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  ],
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  "vtype": "date"
@@ -5206,6 +5210,12 @@
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  "version": "98.0",
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  "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/98.0/",
5208
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  "date": "2024-01-25"
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+ },
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+ {
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+ "retrieved": "2024-03-30",
5216
+ "version": "99.0",
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+ "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/99.0/",
5218
+ "date": "2024-03-28"
5209
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  }
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  ],
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  "vtype": "semver_minor"
@@ -6685,6 +6695,10 @@
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  {
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  "retrieved": "2024-03-25",
6687
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  "version": "2024-02-28"
6698
+ },
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+ {
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+ "retrieved": "2024-03-30",
6701
+ "version": "2024-03-26"
6688
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  }
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  ],
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  "name": "NCBI Taxonomy",
@@ -6991,6 +7005,11 @@
6991
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  "retrieved": "2024-03-29",
6992
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  "version": "March 27, 2024",
6993
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  "date": "2024-03-27"
7008
+ },
7009
+ {
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+ "retrieved": "2024-03-30",
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+ "version": "March 28, 2024",
7012
+ "date": "2024-03-28"
6994
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  }
6995
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  ],
6996
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  "name": "Online Mendelian Inheritance in Man",
@@ -7725,6 +7744,10 @@
7725
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  {
7726
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  "retrieved": "2024-03-29",
7727
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  "version": "2.0.52"
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+ },
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+ {
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+ "retrieved": "2024-03-30",
7750
+ "version": "2.0.53"
7728
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  }
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  ],
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  "name": "Ontology of units of Measure",
@@ -11746,6 +11769,10 @@
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  {
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  "retrieved": "2024-03-29",
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  "version": "2024-03-28"
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+ },
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+ {
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+ "retrieved": "2024-03-30",
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+ "version": "2024-03-29"
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  }
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  ],
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  "name": "SwissLipids",
@@ -12706,6 +12733,10 @@
12706
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  {
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  "retrieved": "2024-03-25",
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  "version": "2024-03-08"
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+ },
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+ {
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+ "retrieved": "2024-03-30",
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+ "version": "2024-03-22"
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  }
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  ],
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  "vtype": "date"
@@ -15492,6 +15523,10 @@
15492
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  {
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  "retrieved": "2024-03-29",
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  "version": "2024-03-27"
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+ },
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+ {
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+ "retrieved": "2024-03-30",
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+ "version": "2024-03-28"
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  }
15496
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  ],
15497
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
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  ]
11
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12
- VERSION = "0.5.326"
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+ VERSION = "0.5.327"
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  def get_git_hash() -> str:
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  Metadata-Version: 2.1
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  Name: bioversions
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- Version: 0.5.326
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+ Version: 0.5.327
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  Summary: What's the current version for each biological database?
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
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