bioversions 0.5.324__tar.gz → 0.5.326__tar.gz

{bioversions-0.5.324/src/bioversions.egg-info → bioversions-0.5.326}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.324
+Version: 0.5.326
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases

{bioversions-0.5.324 → bioversions-0.5.326}/docs/_data/versions.yml

@@ -1,7 +1,7 @@
 annotations:
   author: runner
-  date: '2024-03-27'
-  revision: 625
+  date: '2024-03-29'
+  revision: 627
 database:
 - name: A nomenclatural ontology for biological names
   prefix: nomen
@@ -867,6 +867,8 @@ database:
     version: '2.199'
   - retrieved: '2024-03-25'
     version: '2.204'
+  - retrieved: '2024-03-29'
+    version: '2.205'
   vtype: date
 - name: Clinical Trials Ontology
   prefix: cto
@@ -1012,6 +1014,8 @@ database:
     version: '2022-06-23'
   - retrieved: '2023-05-11'
     version: '2022-12-23'
+  - retrieved: '2024-03-28'
+    version: '2024-03-20'
   vtype: date
 - name: Confidence Information Ontology
   prefix: cio
@@ -1332,6 +1336,10 @@ database:
     homepage: https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-02-28
     retrieved: '2024-03-25'
     version: '2024-02-28'
+  - date: '2024-03-28'
+    homepage: https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-03-28
+    retrieved: '2024-03-29'
+    version: '2024-03-28'
   vtype: date
 - name: DisGeNet
   releases:
@@ -1689,6 +1697,8 @@ database:
   releases:
   - retrieved: '2024-03-25'
     version: '2024-02-02'
+  - retrieved: '2024-03-29'
+    version: '2024-03-25'
   vtype: date
 - name: Evidence Code Ontology
   prefix: eco
@@ -1778,6 +1788,8 @@ database:
     version: '2023-11-08'
   - retrieved: '2024-03-25'
     version: '2024-01-24'
+  - retrieved: '2024-03-28'
+    version: '2024-03-27'
   vtype: date
 - name: Experimental condition ontology
   prefix: xco
@@ -1808,6 +1820,8 @@ database:
     version: '4.148'
   - retrieved: '2024-03-25'
     version: '4.159'
+  - retrieved: '2024-03-29'
+    version: '4.160'
   vtype: date
 - name: Experimental Factor Ontology
   prefix: efo
@@ -2433,6 +2447,10 @@ database:
     homepage: https://www.guidetopharmacology.org/DATA/public_iuphardb_v2023.3.zip
     retrieved: '2023-11-30'
     version: '2023.3'
+  - date: '2024-03-26'
+    homepage: https://www.guidetopharmacology.org/DATA/public_iuphardb_v2024.1.zip
+    retrieved: '2024-03-28'
+    version: '2024.1'
   vtype: year_minor
 - name: Health Surveillance Ontology
   prefix: hso
@@ -3829,6 +3847,12 @@ database:
   - date: '2024-03-25'
     retrieved: '2024-03-27'
     version: March 25, 2024
+  - date: '2024-03-26'
+    retrieved: '2024-03-28'
+    version: March 26, 2024
+  - date: '2024-03-27'
+    retrieved: '2024-03-29'
+    version: March 27, 2024
   vtype: date
 - name: 'OntoAvida: ontology for Avida digital evolution platform'
   prefix: ontoavida
@@ -3925,6 +3949,8 @@ database:
     version: '2023-10-08'
   - retrieved: '2024-03-25'
     version: '2024-01-10'
+  - retrieved: '2024-03-29'
+    version: '2024-03-22'
   vtype: date
 - name: Ontology for Nutritional Studies
   prefix: ons
@@ -4125,6 +4151,8 @@ database:
     version: '2023-09-01'
   - retrieved: '2024-03-25'
     version: '2024-02-02'
+  - retrieved: '2024-03-29'
+    version: '2024-03-25'
   vtype: date
 - name: Ontology of Organizational Structures of Trauma centers and Trauma Systems
   prefix: oostt
@@ -4227,6 +4255,8 @@ database:
     version: 2.0.50
   - retrieved: '2024-03-25'
     version: 2.0.51
+  - retrieved: '2024-03-29'
+    version: 2.0.52
   vtype: semver
 - name: Ontology of units of Measure (OM)
   prefix: om
@@ -5004,6 +5034,8 @@ database:
     version: '6.211'
   - retrieved: '2024-03-25'
     version: '6.219'
+  - retrieved: '2024-03-29'
+    version: '6.220'
   vtype: date
 - name: Reactome
   prefix: reactome
@@ -5036,6 +5068,8 @@ database:
     version: '86'
   - retrieved: '2023-12-15'
     version: '87'
+  - retrieved: '2024-03-28'
+    version: '88'
   vtype: sequential
 - name: Regulation of Gene Expression Ontology
   prefix: rexo
@@ -5165,6 +5199,9 @@ database:
   - date: '2024-01-24'
     retrieved: '2024-03-25'
     version: '131'
+  - date: '2024-03-27'
+    retrieved: '2024-03-28'
+    version: '132'
   vtype: date
 - name: Rice ontology
   prefix: co_320
@@ -6333,6 +6370,10 @@ database:
     version: '2024-03-25'
   - retrieved: '2024-03-27'
     version: '2024-03-26'
+  - retrieved: '2024-03-28'
+    version: '2024-03-27'
+  - retrieved: '2024-03-29'
+    version: '2024-03-28'
   vtype: date
 - name: SWO (The Software Ontology)
   prefix: swo
@@ -6626,6 +6667,8 @@ database:
     version: '2023-12-08'
   - retrieved: '2024-03-25'
     version: '2024-02-20'
+  - retrieved: '2024-03-28'
+    version: '2024-03-22'
   vtype: date
 - name: UBERON
   prefix: uberon
@@ -6743,6 +6786,10 @@ database:
     homepage: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_01/
     retrieved: '2024-03-25'
     version: '2024_01'
+  - date: '2024-02-01'
+    homepage: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_02/
+    retrieved: '2024-03-28'
+    version: '2024_02'
   vtype: month
 - name: Unit Ontology
   prefix: uo
@@ -8410,6 +8457,10 @@ database:
     version: '2024-03-24'
   - retrieved: '2024-03-27'
     version: '2024-03-25'
+  - retrieved: '2024-03-28'
+    version: '2024-03-26'
+  - retrieved: '2024-03-29'
+    version: '2024-03-27'
   vtype: date
 - name: Zebrafish Phenotype Ontology
   prefix: zp

{bioversions-0.5.324 → bioversions-0.5.326}/docs/img/has_release_url.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-03-27T00:46:08.932588</dc:date>
+    <dc:date>2024-03-29T00:46:01.126664</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.324 → bioversions-0.5.326}/docs/img/version_date_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-03-27T00:46:08.864394</dc:date>
+    <dc:date>2024-03-29T00:46:01.057473</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.324 → bioversions-0.5.326}/docs/img/version_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2024-03-27T00:46:08.758093</dc:date>
+    <dc:date>2024-03-29T00:46:00.951153</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.324 → bioversions-0.5.326}/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = bioversions
-version = 0.5.324
+version = 0.5.326
 description = What's the current version for each biological database?
 long_description = file: README.md
 long_description_content_type = text/markdown

{bioversions-0.5.324 → bioversions-0.5.326}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 625,
-    "date": "2024-03-27",
+    "revision": 627,
+    "date": "2024-03-29",
     "author": "runner"
   },
   "database": [
@@ -1585,6 +1585,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2.204"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2.205"
         }
       ],
       "vtype": "date"
@@ -1843,6 +1847,10 @@
         {
           "retrieved": "2023-05-11",
           "version": "2022-12-23"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "2024-03-20"
         }
       ],
       "name": "Compositional Dietary Nutrition Ontology",
@@ -2400,6 +2408,12 @@
           "version": "2024-02-28",
           "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-02-28",
           "date": "2024-02-28"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2024-03-28",
+          "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-03-28",
+          "date": "2024-03-28"
         }
       ],
       "vtype": "date"
@@ -3060,6 +3074,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-02-02"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2024-03-25"
         }
       ],
       "name": "Evidence and Conclusion Ontology",
@@ -3230,6 +3248,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-01-24"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "2024-03-27"
         }
       ],
       "vtype": "date"
@@ -3289,6 +3311,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "4.159"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "4.160"
         }
       ],
       "vtype": "date"
@@ -4431,6 +4457,12 @@
           "version": "2023.3",
           "homepage": "https://www.guidetopharmacology.org/DATA/public_iuphardb_v2023.3.zip",
           "date": "2023-11-29"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "2024.1",
+          "homepage": "https://www.guidetopharmacology.org/DATA/public_iuphardb_v2024.1.zip",
+          "date": "2024-03-26"
         }
       ],
       "name": "Guide to Pharmacology",
@@ -6949,6 +6981,16 @@
           "retrieved": "2024-03-27",
           "version": "March 25, 2024",
           "date": "2024-03-25"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "March 26, 2024",
+          "date": "2024-03-26"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "March 27, 2024",
+          "date": "2024-03-27"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -7131,6 +7173,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-01-10"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2024-03-22"
         }
       ],
       "name": "Ontology for Modeling and Representation of Social Entities",
@@ -7519,6 +7565,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-02-02"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2024-03-25"
         }
       ],
       "vtype": "date"
@@ -7671,6 +7721,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2.0.51"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2.0.52"
         }
       ],
       "name": "Ontology of units of Measure",
@@ -9091,6 +9145,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "6.219"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "6.220"
         }
       ],
       "vtype": "date"
@@ -9154,6 +9212,10 @@
         {
           "retrieved": "2023-12-15",
           "version": "87"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "88"
         }
       ],
       "vtype": "sequential"
@@ -9385,6 +9447,11 @@
           "retrieved": "2024-03-25",
           "version": "131",
           "date": "2024-01-24"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "132",
+          "date": "2024-03-27"
         }
       ],
       "vtype": "date"
@@ -11671,6 +11738,14 @@
         {
           "retrieved": "2024-03-27",
           "version": "2024-03-26"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "2024-03-27"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2024-03-28"
         }
       ],
       "name": "SwissLipids",
@@ -12229,6 +12304,10 @@
         {
           "retrieved": "2024-03-25",
           "version": "2024-02-20"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "2024-03-22"
         }
       ],
       "name": "Uber Anatomy Ontology",
@@ -12430,6 +12509,12 @@
           "version": "2024_01",
           "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_01/",
           "date": "2024-01-01"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "2024_02",
+          "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_02/",
+          "date": "2024-02-01"
         }
       ],
       "vtype": "month"
@@ -15399,6 +15484,14 @@
         {
           "retrieved": "2024-03-27",
           "version": "2024-03-25"
+        },
+        {
+          "retrieved": "2024-03-28",
+          "version": "2024-03-26"
+        },
+        {
+          "retrieved": "2024-03-29",
+          "version": "2024-03-27"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.5.324 → bioversions-0.5.326}/src/bioversions/sources/__init__.py

@@ -153,6 +153,7 @@ def get_getter_dict() -> Mapping[str, Type[Getter]]:
         rv[norm(getter.name)] = getter
     # TODO engineer this into the data model and backfill them
     rv["omim.ps"] = OMIMGetter
+    rv["omimps"] = OMIMGetter
     return rv
 
 

{bioversions-0.5.324 → bioversions-0.5.326}/src/bioversions/utils.py

@@ -270,7 +270,7 @@ class OBOFoundryGetter(Getter):
 
     def get(self) -> str:
         """Get the OBO version."""
-        url = f"http://purl.obolibrary.org/obo/{self.key}.obo"
+        url = f"https://purl.obolibrary.org/obo/{self.key}.obo"
         return self.process(get_obo_version(url))
 
     def process(self, version: str) -> str:

{bioversions-0.5.324 → bioversions-0.5.326}/src/bioversions/version.py

@@ -9,7 +9,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.5.324"
+VERSION = "0.5.326"
 
 
 def get_git_hash() -> str:

{bioversions-0.5.324 → bioversions-0.5.326/src/bioversions.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.324
+Version: 0.5.326
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases