bioversions 0.5.310__tar.gz → 0.5.311__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (95) hide show
  1. {bioversions-0.5.310/src/bioversions.egg-info → bioversions-0.5.311}/PKG-INFO +1 -1
  2. {bioversions-0.5.310 → bioversions-0.5.311}/docs/_data/versions.yml +10 -2
  3. {bioversions-0.5.310 → bioversions-0.5.311}/docs/failures.md +1 -2
  4. {bioversions-0.5.310 → bioversions-0.5.311}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.310 → bioversions-0.5.311}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.310 → bioversions-0.5.311}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.310 → bioversions-0.5.311}/setup.cfg +1 -1
  8. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/resources/versions.json +18 -2
  9. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.310 → bioversions-0.5.311/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.310 → bioversions-0.5.311}/LICENSE +0 -0
  12. {bioversions-0.5.310 → bioversions-0.5.311}/MANIFEST.in +0 -0
  13. {bioversions-0.5.310 → bioversions-0.5.311}/README.md +0 -0
  14. {bioversions-0.5.310 → bioversions-0.5.311}/docs/_config.yml +0 -0
  15. {bioversions-0.5.310 → bioversions-0.5.311}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.310 → bioversions-0.5.311}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.310 → bioversions-0.5.311}/docs/download.md +0 -0
  18. {bioversions-0.5.310 → bioversions-0.5.311}/docs/index.md +0 -0
  19. {bioversions-0.5.310 → bioversions-0.5.311}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.310 → bioversions-0.5.311}/docs/summary.md +0 -0
  21. {bioversions-0.5.310 → bioversions-0.5.311}/pyproject.toml +0 -0
  22. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/complexportal.py +0 -0
  39. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/daily.py +0 -0
  40. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/depmap.py +0 -0
  41. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/dgi.py +0 -0
  42. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/disgenet.py +0 -0
  43. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/drugbank.py +0 -0
  44. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/drugcentral.py +0 -0
  45. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/ensembl.py +0 -0
  46. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/expasy.py +0 -0
  47. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/flybase.py +0 -0
  48. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/guidetopharmacology.py +0 -0
  49. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/hgnc.py +0 -0
  50. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/homologene.py +0 -0
  51. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/intact.py +0 -0
  52. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/interpro.py +0 -0
  53. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/itis.py +0 -0
  54. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/kegg.py +0 -0
  55. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/mesh.py +0 -0
  56. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/mgi.py +0 -0
  57. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/mirbase.py +0 -0
  58. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/moalmanac.py +0 -0
  59. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/msigdb.py +0 -0
  60. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/ncit.py +0 -0
  61. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/npass.py +0 -0
  62. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/obo.py +0 -0
  63. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/ols.py +0 -0
  64. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/oncotree.py +0 -0
  65. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/pathbank.py +0 -0
  66. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/pathwaycommons.py +0 -0
  67. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/pfam.py +0 -0
  68. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/pombase.py +0 -0
  69. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/pr.py +0 -0
  70. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/pubchem.py +0 -0
  71. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/reactome.py +0 -0
  72. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/rfam.py +0 -0
  73. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/rgd.py +0 -0
  74. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/rhea.py +0 -0
  75. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/rxnorm.py +0 -0
  76. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/sgd.py +0 -0
  77. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/slm.py +0 -0
  78. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/stringdb.py +0 -0
  79. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/umls.py +0 -0
  80. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/uniprot.py +0 -0
  81. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/unversioned.py +0 -0
  82. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/wikipathways.py +0 -0
  83. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/sources/zfin.py +0 -0
  84. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/templates/base.html +0 -0
  85. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/templates/home.html +0 -0
  86. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/twitter_client.py +0 -0
  87. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/utils.py +0 -0
  88. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions/wsgi.py +0 -0
  89. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions.egg-info/SOURCES.txt +0 -0
  90. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions.egg-info/dependency_links.txt +0 -0
  91. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions.egg-info/entry_points.txt +0 -0
  92. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions.egg-info/not-zip-safe +0 -0
  93. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions.egg-info/requires.txt +0 -0
  94. {bioversions-0.5.310 → bioversions-0.5.311}/src/bioversions.egg-info/top_level.txt +0 -0
  95. {bioversions-0.5.310 → bioversions-0.5.311}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.310
3
+ Version: 0.5.311
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2023-12-06'
4
- revision: 612
3
+ date: '2023-12-07'
4
+ revision: 613
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -1100,6 +1100,8 @@ database:
1100
1100
  version: 22Q4
1101
1101
  - retrieved: '2023-05-10'
1102
1102
  version: 23Q2
1103
+ - retrieved: '2023-12-07'
1104
+ version: 23Q4
1103
1105
  vtype: other
1104
1106
  - name: DICOM Controlled Terminology
1105
1107
  prefix: dicom
@@ -4086,6 +4088,8 @@ database:
4086
4088
  version: '2023-09-07'
4087
4089
  - retrieved: '2023-11-02'
4088
4090
  version: '2023-10-11'
4091
+ - retrieved: '2023-12-07'
4092
+ version: '2023-11-30'
4089
4093
  vtype: date
4090
4094
  - name: Pathogen Host Interactions Phenotype Ontology
4091
4095
  prefix: phipo
@@ -6020,6 +6024,8 @@ database:
6020
6024
  version: '2023-12-05'
6021
6025
  - retrieved: '2023-12-06'
6022
6026
  version: '2023-12-06'
6027
+ - retrieved: '2023-12-07'
6028
+ version: '2023-12-07'
6023
6029
  vtype: date
6024
6030
  - name: SWO (The Software Ontology)
6025
6031
  prefix: swo
@@ -8043,6 +8049,8 @@ database:
8043
8049
  version: '2023-12-03'
8044
8050
  - retrieved: '2023-12-06'
8045
8051
  version: '2023-12-04'
8052
+ - retrieved: '2023-12-07'
8053
+ version: '2023-12-05'
8046
8054
  vtype: date
8047
8055
  - name: Zebrafish Phenotype Ontology
8048
8056
  prefix: zp
@@ -2,5 +2,4 @@
2
2
 
3
3
  - issue parsing Drug Gene Interaction Database:
4
4
  - failed to resolve Antibody Registry
5
- - issue parsing Ensembl: Issue in EnsemblGetter with date July 2023 and fmt %b %Y
6
- - failed to resolve National Cancer Institute Thesaurus
5
+ - issue parsing Ensembl: Issue in EnsemblGetter with date July 2023 and fmt %b %Y
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-12-06T00:49:51.199607</dc:date>
9
+ <dc:date>2023-12-07T00:49:22.733943</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-12-06T00:49:51.137348</dc:date>
9
+ <dc:date>2023-12-07T00:49:22.671669</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-12-06T00:49:51.042730</dc:date>
9
+ <dc:date>2023-12-07T00:49:22.576825</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.310
3
+ version = 0.5.311
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 612,
4
- "date": "2023-12-06",
3
+ "revision": 613,
4
+ "date": "2023-12-07",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -2013,6 +2013,10 @@
2013
2013
  {
2014
2014
  "retrieved": "2023-05-10",
2015
2015
  "version": "23Q2"
2016
+ },
2017
+ {
2018
+ "retrieved": "2023-12-07",
2019
+ "version": "23Q4"
2016
2020
  }
2017
2021
  ],
2018
2022
  "name": "DepMap",
@@ -7432,6 +7436,10 @@
7432
7436
  {
7433
7437
  "retrieved": "2023-11-02",
7434
7438
  "version": "2023-10-11"
7439
+ },
7440
+ {
7441
+ "retrieved": "2023-12-07",
7442
+ "version": "2023-11-30"
7435
7443
  }
7436
7444
  ],
7437
7445
  "name": "Pathogen Host Interaction Phenotype Ontology",
@@ -11116,6 +11124,10 @@
11116
11124
  {
11117
11125
  "retrieved": "2023-12-06",
11118
11126
  "version": "2023-12-06"
11127
+ },
11128
+ {
11129
+ "retrieved": "2023-12-07",
11130
+ "version": "2023-12-07"
11119
11131
  }
11120
11132
  ],
11121
11133
  "name": "SwissLipids",
@@ -14742,6 +14754,10 @@
14742
14754
  {
14743
14755
  "retrieved": "2023-12-06",
14744
14756
  "version": "2023-12-04"
14757
+ },
14758
+ {
14759
+ "retrieved": "2023-12-07",
14760
+ "version": "2023-12-05"
14745
14761
  }
14746
14762
  ],
14747
14763
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.310"
12
+ VERSION = "0.5.311"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.310
3
+ Version: 0.5.311
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
File without changes
File without changes
File without changes