bioversions 0.5.281__tar.gz → 0.5.283__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (95) hide show
  1. {bioversions-0.5.281/src/bioversions.egg-info → bioversions-0.5.283}/PKG-INFO +1 -1
  2. {bioversions-0.5.281 → bioversions-0.5.283}/docs/_data/versions.yml +25 -2
  3. {bioversions-0.5.281 → bioversions-0.5.283}/docs/failures.md +1 -2
  4. {bioversions-0.5.281 → bioversions-0.5.283}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.281 → bioversions-0.5.283}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.281 → bioversions-0.5.283}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.281 → bioversions-0.5.283}/setup.cfg +1 -1
  8. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/resources/versions.json +45 -2
  9. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.281 → bioversions-0.5.283/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.281 → bioversions-0.5.283}/LICENSE +0 -0
  12. {bioversions-0.5.281 → bioversions-0.5.283}/MANIFEST.in +0 -0
  13. {bioversions-0.5.281 → bioversions-0.5.283}/README.md +0 -0
  14. {bioversions-0.5.281 → bioversions-0.5.283}/docs/_config.yml +0 -0
  15. {bioversions-0.5.281 → bioversions-0.5.283}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.281 → bioversions-0.5.283}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.281 → bioversions-0.5.283}/docs/download.md +0 -0
  18. {bioversions-0.5.281 → bioversions-0.5.283}/docs/index.md +0 -0
  19. {bioversions-0.5.281 → bioversions-0.5.283}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.281 → bioversions-0.5.283}/docs/summary.md +0 -0
  21. {bioversions-0.5.281 → bioversions-0.5.283}/pyproject.toml +0 -0
  22. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/complexportal.py +0 -0
  39. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/daily.py +0 -0
  40. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/depmap.py +0 -0
  41. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/dgi.py +0 -0
  42. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/disgenet.py +0 -0
  43. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/drugbank.py +0 -0
  44. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/drugcentral.py +0 -0
  45. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/ensembl.py +0 -0
  46. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/expasy.py +0 -0
  47. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/flybase.py +0 -0
  48. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/guidetopharmacology.py +0 -0
  49. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/hgnc.py +0 -0
  50. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/homologene.py +0 -0
  51. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/intact.py +0 -0
  52. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/interpro.py +0 -0
  53. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/itis.py +0 -0
  54. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/kegg.py +0 -0
  55. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/mesh.py +0 -0
  56. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/mgi.py +0 -0
  57. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/mirbase.py +0 -0
  58. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/moalmanac.py +0 -0
  59. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/msigdb.py +0 -0
  60. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/ncit.py +0 -0
  61. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/npass.py +0 -0
  62. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/obo.py +0 -0
  63. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/ols.py +0 -0
  64. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/oncotree.py +0 -0
  65. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/pathbank.py +0 -0
  66. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/pathwaycommons.py +0 -0
  67. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/pfam.py +0 -0
  68. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/pombase.py +0 -0
  69. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/pr.py +0 -0
  70. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/pubchem.py +0 -0
  71. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/reactome.py +0 -0
  72. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/rfam.py +0 -0
  73. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/rgd.py +0 -0
  74. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/rhea.py +0 -0
  75. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/rxnorm.py +0 -0
  76. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/sgd.py +0 -0
  77. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/slm.py +0 -0
  78. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/stringdb.py +0 -0
  79. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/umls.py +0 -0
  80. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/uniprot.py +0 -0
  81. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/unversioned.py +0 -0
  82. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/wikipathways.py +0 -0
  83. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/sources/zfin.py +0 -0
  84. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/templates/base.html +0 -0
  85. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/templates/home.html +0 -0
  86. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/twitter_client.py +0 -0
  87. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/utils.py +0 -0
  88. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions/wsgi.py +0 -0
  89. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions.egg-info/SOURCES.txt +0 -0
  90. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions.egg-info/dependency_links.txt +0 -0
  91. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions.egg-info/entry_points.txt +0 -0
  92. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions.egg-info/not-zip-safe +0 -0
  93. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions.egg-info/requires.txt +0 -0
  94. {bioversions-0.5.281 → bioversions-0.5.283}/src/bioversions.egg-info/top_level.txt +0 -0
  95. {bioversions-0.5.281 → bioversions-0.5.283}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.281
3
+ Version: 0.5.283
4
4
  Summary: What's the current version for each biological database?
5
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  Home-page: https://github.com/biopragmatics/bioversions
6
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2023-11-07'
4
- revision: 583
3
+ date: '2023-11-09'
4
+ revision: 585
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
7
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  prefix: nomen
@@ -1018,6 +1018,8 @@ database:
1018
1018
  version: 1.0.326
1019
1019
  - retrieved: '2023-03-24'
1020
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  version: 1.0.337
1021
+ - retrieved: '2023-11-09'
1022
+ version: 1.0.369
1021
1023
  vtype: semver
1022
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  - name: Cotton ontology
1023
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  prefix: co_358
@@ -1669,6 +1671,8 @@ database:
1669
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  version: '2023-06-28'
1670
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  - retrieved: '2023-09-18'
1671
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  version: '2023-09-13'
1674
+ - retrieved: '2023-11-09'
1675
+ version: '2023-11-08'
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  vtype: date
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  - name: Experimental condition ontology
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  prefix: xco
@@ -2821,6 +2825,8 @@ database:
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  version: 4.1.127
2822
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  - retrieved: '2023-09-28'
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  version: 4.1.131
2828
+ - retrieved: '2023-11-09'
2829
+ version: 4.1.134
2824
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  vtype: date
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  - name: Mathematical modeling ontology
2826
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  prefix: mamo
@@ -3478,6 +3484,8 @@ database:
3478
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  version: '2023-08-23'
3479
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  - retrieved: '2023-11-02'
3480
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  version: '2023-10-12'
3487
+ - retrieved: '2023-11-08'
3488
+ version: '2023-11-02'
3481
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  vtype: date
3482
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  - name: Obstetric and Neonatal Ontology
3483
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  prefix: ontoneo
@@ -4769,6 +4777,9 @@ database:
4769
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  - date: '2023-09-13'
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  retrieved: '2023-09-18'
4771
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  version: '129'
4780
+ - date: '2023-11-08'
4781
+ retrieved: '2023-11-09'
4782
+ version: '130'
4772
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  vtype: date
4773
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  - name: Rice ontology
4774
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  prefix: co_320
@@ -5865,6 +5876,10 @@ database:
5865
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  version: '2023-11-05'
5866
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  - retrieved: '2023-11-07'
5867
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  version: '2023-11-06'
5879
+ - retrieved: '2023-11-08'
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+ version: '2023-11-07'
5881
+ - retrieved: '2023-11-09'
5882
+ version: '2023-11-09'
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  vtype: date
5869
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -6249,6 +6264,10 @@ database:
6249
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  homepage: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2023_04/
6250
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  retrieved: '2023-09-18'
6251
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  version: '2023_04'
6267
+ - date: '2023-05-01'
6268
+ homepage: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2023_05/
6269
+ retrieved: '2023-11-09'
6270
+ version: '2023_05'
6252
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  vtype: month
6253
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  - name: Unit Ontology
6254
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  prefix: uo
@@ -7814,6 +7833,10 @@ database:
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  version: '2023-11-04'
7815
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  - retrieved: '2023-11-07'
7816
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  version: '2023-11-05'
7836
+ - retrieved: '2023-11-08'
7837
+ version: '2023-11-06'
7838
+ - retrieved: '2023-11-09'
7839
+ version: '2023-11-07'
7817
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  vtype: date
7818
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -1,5 +1,4 @@
1
1
  # Errors
2
2
 
3
3
  - failed to resolve Antibody Registry
4
- - issue parsing Ensembl: Issue in EnsemblGetter with date July 2023 and fmt %b %Y
5
- - failed to resolve NPASS
4
+ - issue parsing Ensembl: Issue in EnsemblGetter with date July 2023 and fmt %b %Y
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-11-07T00:46:56.318478</dc:date>
9
+ <dc:date>2023-11-09T00:52:03.038981</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-11-07T00:46:56.264634</dc:date>
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+ <dc:date>2023-11-09T00:52:02.969840</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-11-07T00:46:56.182413</dc:date>
9
+ <dc:date>2023-11-09T00:52:02.865586</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
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  [metadata]
2
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  name = bioversions
3
- version = 0.5.281
3
+ version = 0.5.283
4
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  description = What's the current version for each biological database?
5
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  long_description = file: README.md
6
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
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  {
2
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  "annotations": {
3
- "revision": 583,
4
- "date": "2023-11-07",
3
+ "revision": 585,
4
+ "date": "2023-11-09",
5
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  "author": "runner"
6
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  },
7
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  "database": [
@@ -1857,6 +1857,10 @@
1857
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  {
1858
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  "retrieved": "2023-03-24",
1859
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  "version": "1.0.337"
1860
+ },
1861
+ {
1862
+ "retrieved": "2023-11-09",
1863
+ "version": "1.0.369"
1860
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  }
1861
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  ],
1862
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  "name": "Coronavirus Infectious Disease Ontology",
@@ -3029,6 +3033,10 @@
3029
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  {
3030
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  "retrieved": "2023-09-18",
3031
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  "version": "2023-09-13"
3036
+ },
3037
+ {
3038
+ "retrieved": "2023-11-09",
3039
+ "version": "2023-11-08"
3032
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  }
3033
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  ],
3034
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  "vtype": "date"
@@ -5126,6 +5134,10 @@
5126
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  {
5127
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  "retrieved": "2023-09-28",
5128
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  "version": "4.1.131"
5137
+ },
5138
+ {
5139
+ "retrieved": "2023-11-09",
5140
+ "version": "4.1.134"
5129
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  }
5130
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  ],
5131
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  "name": "Mass spectrometry ontology",
@@ -6336,6 +6348,10 @@
6336
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  {
6337
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  "retrieved": "2023-11-02",
6338
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  "version": "2023-10-12"
6351
+ },
6352
+ {
6353
+ "retrieved": "2023-11-08",
6354
+ "version": "2023-11-02"
6339
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  }
6340
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  ],
6341
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  "vtype": "date"
@@ -8681,6 +8697,11 @@
8681
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  "retrieved": "2023-09-18",
8682
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  "version": "129",
8683
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  "date": "2023-09-13"
8700
+ },
8701
+ {
8702
+ "retrieved": "2023-11-09",
8703
+ "version": "130",
8704
+ "date": "2023-11-08"
8684
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  }
8685
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  ],
8686
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  "vtype": "date"
@@ -10825,6 +10846,14 @@
10825
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  {
10826
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  "retrieved": "2023-11-07",
10827
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  "version": "2023-11-06"
10849
+ },
10850
+ {
10851
+ "retrieved": "2023-11-08",
10852
+ "version": "2023-11-07"
10853
+ },
10854
+ {
10855
+ "retrieved": "2023-11-09",
10856
+ "version": "2023-11-09"
10828
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  }
10829
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  ],
10830
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  "name": "SwissLipids",
@@ -11536,6 +11565,12 @@
11536
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  "version": "2023_04",
11537
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  "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2023_04/",
11538
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  "date": "2023-04-01"
11568
+ },
11569
+ {
11570
+ "retrieved": "2023-11-09",
11571
+ "version": "2023_05",
11572
+ "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2023_05/",
11573
+ "date": "2023-05-01"
11539
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  }
11540
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  ],
11541
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  "vtype": "month"
@@ -14307,6 +14342,14 @@
14307
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  {
14308
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  "retrieved": "2023-11-07",
14309
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  "version": "2023-11-05"
14345
+ },
14346
+ {
14347
+ "retrieved": "2023-11-08",
14348
+ "version": "2023-11-06"
14349
+ },
14350
+ {
14351
+ "retrieved": "2023-11-09",
14352
+ "version": "2023-11-07"
14310
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  }
14311
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  ],
14312
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
10
  ]
11
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12
- VERSION = "0.5.281"
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+ VERSION = "0.5.283"
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bioversions
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- Version: 0.5.281
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+ Version: 0.5.283
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  Summary: What's the current version for each biological database?
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
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