bioversions 0.5.279__tar.gz → 0.5.281__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (95) hide show
  1. {bioversions-0.5.279/src/bioversions.egg-info → bioversions-0.5.281}/PKG-INFO +1 -1
  2. {bioversions-0.5.279 → bioversions-0.5.281}/docs/_data/versions.yml +17 -2
  3. {bioversions-0.5.279 → bioversions-0.5.281}/docs/failures.md +1 -1
  4. {bioversions-0.5.279 → bioversions-0.5.281}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.279 → bioversions-0.5.281}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.279 → bioversions-0.5.281}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.279 → bioversions-0.5.281}/setup.cfg +1 -1
  8. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/resources/versions.json +31 -2
  9. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.279 → bioversions-0.5.281/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.279 → bioversions-0.5.281}/LICENSE +0 -0
  12. {bioversions-0.5.279 → bioversions-0.5.281}/MANIFEST.in +0 -0
  13. {bioversions-0.5.279 → bioversions-0.5.281}/README.md +0 -0
  14. {bioversions-0.5.279 → bioversions-0.5.281}/docs/_config.yml +0 -0
  15. {bioversions-0.5.279 → bioversions-0.5.281}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.279 → bioversions-0.5.281}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.279 → bioversions-0.5.281}/docs/download.md +0 -0
  18. {bioversions-0.5.279 → bioversions-0.5.281}/docs/index.md +0 -0
  19. {bioversions-0.5.279 → bioversions-0.5.281}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.279 → bioversions-0.5.281}/docs/summary.md +0 -0
  21. {bioversions-0.5.279 → bioversions-0.5.281}/pyproject.toml +0 -0
  22. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/complexportal.py +0 -0
  39. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/daily.py +0 -0
  40. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/depmap.py +0 -0
  41. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/dgi.py +0 -0
  42. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/disgenet.py +0 -0
  43. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/drugbank.py +0 -0
  44. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/drugcentral.py +0 -0
  45. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/ensembl.py +0 -0
  46. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/expasy.py +0 -0
  47. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/flybase.py +0 -0
  48. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/guidetopharmacology.py +0 -0
  49. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/hgnc.py +0 -0
  50. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/homologene.py +0 -0
  51. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/intact.py +0 -0
  52. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/interpro.py +0 -0
  53. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/itis.py +0 -0
  54. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/kegg.py +0 -0
  55. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/mesh.py +0 -0
  56. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/mgi.py +0 -0
  57. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/mirbase.py +0 -0
  58. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/moalmanac.py +0 -0
  59. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/msigdb.py +0 -0
  60. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/ncit.py +0 -0
  61. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/npass.py +0 -0
  62. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/obo.py +0 -0
  63. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/ols.py +0 -0
  64. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/oncotree.py +0 -0
  65. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/pathbank.py +0 -0
  66. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/pathwaycommons.py +0 -0
  67. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/pfam.py +0 -0
  68. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/pombase.py +0 -0
  69. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/pr.py +0 -0
  70. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/pubchem.py +0 -0
  71. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/reactome.py +0 -0
  72. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/rfam.py +0 -0
  73. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/rgd.py +0 -0
  74. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/rhea.py +0 -0
  75. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/rxnorm.py +0 -0
  76. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/sgd.py +0 -0
  77. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/slm.py +0 -0
  78. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/stringdb.py +0 -0
  79. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/umls.py +0 -0
  80. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/uniprot.py +0 -0
  81. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/unversioned.py +0 -0
  82. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/wikipathways.py +0 -0
  83. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/sources/zfin.py +0 -0
  84. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/templates/base.html +0 -0
  85. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/templates/home.html +0 -0
  86. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/twitter_client.py +0 -0
  87. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/utils.py +0 -0
  88. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions/wsgi.py +0 -0
  89. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions.egg-info/SOURCES.txt +0 -0
  90. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions.egg-info/dependency_links.txt +0 -0
  91. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions.egg-info/entry_points.txt +0 -0
  92. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions.egg-info/not-zip-safe +0 -0
  93. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions.egg-info/requires.txt +0 -0
  94. {bioversions-0.5.279 → bioversions-0.5.281}/src/bioversions.egg-info/top_level.txt +0 -0
  95. {bioversions-0.5.279 → bioversions-0.5.281}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.279
3
+ Version: 0.5.281
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2023-11-05'
4
- revision: 581
3
+ date: '2023-11-07'
4
+ revision: 583
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
7
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  prefix: nomen
@@ -4229,6 +4229,8 @@ database:
4229
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  releases:
4230
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  - retrieved: '2021-02-02'
4231
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  version: '2020-05-19'
4232
+ - retrieved: '2023-11-06'
4233
+ version: '2023-10-19'
4232
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  vtype: date
4233
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  - name: Plant Trait Ontology
4234
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  prefix: to
@@ -4601,6 +4603,8 @@ database:
4601
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  version: '2023-10-20'
4602
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  - retrieved: '2023-10-31'
4603
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  version: '2023-10-27'
4606
+ - retrieved: '2023-11-07'
4607
+ version: '2023-11-03'
4604
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  vtype: date
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  - name: Rat Strain Ontology
4606
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  prefix: rs
@@ -4851,6 +4855,9 @@ database:
4851
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  - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_10022023.zip
4852
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  retrieved: '2023-09-30'
4853
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  version: '2023-10-02'
4858
+ - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_11062023.zip
4859
+ retrieved: '2023-11-07'
4860
+ version: '2023-11-06'
4854
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  vtype: date
4855
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  - name: Saccharomyces Genome Database
4856
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  prefix: sgd
@@ -5856,6 +5863,8 @@ database:
5856
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  version: '2023-11-03'
5857
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  - retrieved: '2023-11-05'
5858
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  version: '2023-11-05'
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+ - retrieved: '2023-11-07'
5867
+ version: '2023-11-06'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -6153,6 +6162,8 @@ database:
6153
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  version: 2022AB
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  - retrieved: '2023-05-02'
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  version: 2023AA
6165
+ - retrieved: '2023-11-07'
6166
+ version: 2023AB
6156
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  vtype: other
6157
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  - name: Unified Phenotype Ontology
6158
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  prefix: upheno
@@ -7799,6 +7810,10 @@ database:
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  version: '2023-11-02'
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  - retrieved: '2023-11-05'
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  version: '2023-11-03'
7813
+ - retrieved: '2023-11-06'
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+ version: '2023-11-04'
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+ - retrieved: '2023-11-07'
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+ version: '2023-11-05'
7802
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -2,4 +2,4 @@
2
2
 
3
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  - failed to resolve Antibody Registry
4
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  - issue parsing Ensembl: Issue in EnsemblGetter with date July 2023 and fmt %b %Y
5
- - failed to resolve PathBank
5
+ - failed to resolve NPASS
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-11-05T00:50:28.033317</dc:date>
9
+ <dc:date>2023-11-07T00:46:56.318478</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-11-05T00:50:27.973936</dc:date>
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+ <dc:date>2023-11-07T00:46:56.264634</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-11-05T00:50:27.882871</dc:date>
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+ <dc:date>2023-11-07T00:46:56.182413</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
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  [metadata]
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  name = bioversions
3
- version = 0.5.279
3
+ version = 0.5.281
4
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  description = What's the current version for each biological database?
5
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  long_description = file: README.md
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
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  {
2
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  "annotations": {
3
- "revision": 581,
4
- "date": "2023-11-05",
3
+ "revision": 583,
4
+ "date": "2023-11-07",
5
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  "author": "runner"
6
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  },
7
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  "database": [
@@ -7710,6 +7710,10 @@
7710
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  {
7711
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  "retrieved": "2021-02-02",
7712
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  "version": "2020-05-19"
7713
+ },
7714
+ {
7715
+ "retrieved": "2023-11-06",
7716
+ "version": "2023-10-19"
7713
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  }
7714
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  ],
7715
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  "vtype": "date"
@@ -8369,6 +8373,10 @@
8369
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  {
8370
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  "retrieved": "2023-10-31",
8371
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  "version": "2023-10-27"
8376
+ },
8377
+ {
8378
+ "retrieved": "2023-11-07",
8379
+ "version": "2023-11-03"
8372
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  }
8373
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  ],
8374
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  "name": "Rat Genome Database",
@@ -8819,6 +8827,11 @@
8819
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  "retrieved": "2023-09-30",
8820
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  "version": "2023-10-02",
8821
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  "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_10022023.zip"
8830
+ },
8831
+ {
8832
+ "retrieved": "2023-11-07",
8833
+ "version": "2023-11-06",
8834
+ "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_11062023.zip"
8822
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  }
8823
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  ],
8824
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  "name": "RxNorm",
@@ -10808,6 +10821,10 @@
10808
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  {
10809
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  "retrieved": "2023-11-05",
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  "version": "2023-11-05"
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+ },
10825
+ {
10826
+ "retrieved": "2023-11-07",
10827
+ "version": "2023-11-06"
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  }
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  ],
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  "name": "SwissLipids",
@@ -11372,6 +11389,10 @@
11372
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  {
11373
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  "retrieved": "2023-05-02",
11374
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  "version": "2023AA"
11392
+ },
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+ {
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+ "retrieved": "2023-11-07",
11395
+ "version": "2023AB"
11375
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  }
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  ],
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  "name": "UMLS",
@@ -14278,6 +14299,14 @@
14278
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  {
14279
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  "retrieved": "2023-11-05",
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  "version": "2023-11-03"
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+ },
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+ {
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+ "retrieved": "2023-11-06",
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+ "version": "2023-11-04"
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+ },
14307
+ {
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+ "retrieved": "2023-11-07",
14309
+ "version": "2023-11-05"
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  }
14282
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  ],
14283
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
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  ]
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- VERSION = "0.5.279"
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+ VERSION = "0.5.281"
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.279
3
+ Version: 0.5.281
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
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