bioversions 0.5.267__tar.gz → 0.5.268__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (95) hide show
  1. {bioversions-0.5.267/src/bioversions.egg-info → bioversions-0.5.268}/PKG-INFO +1 -1
  2. {bioversions-0.5.267 → bioversions-0.5.268}/docs/_data/versions.yml +6 -2
  3. {bioversions-0.5.267 → bioversions-0.5.268}/docs/failures.md +3 -1
  4. {bioversions-0.5.267 → bioversions-0.5.268}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.267 → bioversions-0.5.268}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.267 → bioversions-0.5.268}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.267 → bioversions-0.5.268}/setup.cfg +1 -1
  8. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/resources/versions.json +10 -2
  9. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.267 → bioversions-0.5.268/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. {bioversions-0.5.267 → bioversions-0.5.268}/LICENSE +0 -0
  12. {bioversions-0.5.267 → bioversions-0.5.268}/MANIFEST.in +0 -0
  13. {bioversions-0.5.267 → bioversions-0.5.268}/README.md +0 -0
  14. {bioversions-0.5.267 → bioversions-0.5.268}/docs/_config.yml +0 -0
  15. {bioversions-0.5.267 → bioversions-0.5.268}/docs/_includes/footer.html +0 -0
  16. {bioversions-0.5.267 → bioversions-0.5.268}/docs/_includes/head.html +0 -0
  17. {bioversions-0.5.267 → bioversions-0.5.268}/docs/download.md +0 -0
  18. {bioversions-0.5.267 → bioversions-0.5.268}/docs/index.md +0 -0
  19. {bioversions-0.5.267 → bioversions-0.5.268}/docs/source/logo.png +0 -0
  20. {bioversions-0.5.267 → bioversions-0.5.268}/docs/summary.md +0 -0
  21. {bioversions-0.5.267 → bioversions-0.5.268}/pyproject.toml +0 -0
  22. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/__init__.py +0 -0
  23. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/__main__.py +0 -0
  24. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/charts.py +0 -0
  25. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/cli.py +0 -0
  26. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/py.typed +0 -0
  27. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/resources/__init__.py +0 -0
  28. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/resources/update.py +0 -0
  29. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/slack_client.py +0 -0
  30. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/__init__.py +0 -0
  31. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/antibodyregistry.py +0 -0
  32. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/bigg.py +0 -0
  33. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/biogrid.py +0 -0
  34. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/cellosaurus.py +0 -0
  35. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/chebi.py +0 -0
  36. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/chembl.py +0 -0
  37. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/chemidplus.py +0 -0
  38. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/complexportal.py +0 -0
  39. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/daily.py +0 -0
  40. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/depmap.py +0 -0
  41. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/dgi.py +0 -0
  42. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/disgenet.py +0 -0
  43. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/drugbank.py +0 -0
  44. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/drugcentral.py +0 -0
  45. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/ensembl.py +0 -0
  46. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/expasy.py +0 -0
  47. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/flybase.py +0 -0
  48. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/guidetopharmacology.py +0 -0
  49. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/hgnc.py +0 -0
  50. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/homologene.py +0 -0
  51. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/intact.py +0 -0
  52. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/interpro.py +0 -0
  53. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/itis.py +0 -0
  54. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/kegg.py +0 -0
  55. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/mesh.py +0 -0
  56. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/mgi.py +0 -0
  57. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/mirbase.py +0 -0
  58. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/moalmanac.py +0 -0
  59. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/msigdb.py +0 -0
  60. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/ncit.py +0 -0
  61. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/npass.py +0 -0
  62. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/obo.py +0 -0
  63. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/ols.py +0 -0
  64. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/oncotree.py +0 -0
  65. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/pathbank.py +0 -0
  66. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/pathwaycommons.py +0 -0
  67. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/pfam.py +0 -0
  68. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/pombase.py +0 -0
  69. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/pr.py +0 -0
  70. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/pubchem.py +0 -0
  71. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/reactome.py +0 -0
  72. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/rfam.py +0 -0
  73. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/rgd.py +0 -0
  74. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/rhea.py +0 -0
  75. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/rxnorm.py +0 -0
  76. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/sgd.py +0 -0
  77. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/slm.py +0 -0
  78. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/stringdb.py +0 -0
  79. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/umls.py +0 -0
  80. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/uniprot.py +0 -0
  81. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/unversioned.py +0 -0
  82. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/wikipathways.py +0 -0
  83. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/sources/zfin.py +0 -0
  84. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/templates/base.html +0 -0
  85. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/templates/home.html +0 -0
  86. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/twitter_client.py +0 -0
  87. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/utils.py +0 -0
  88. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/wsgi.py +0 -0
  89. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions.egg-info/SOURCES.txt +0 -0
  90. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions.egg-info/dependency_links.txt +0 -0
  91. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions.egg-info/entry_points.txt +0 -0
  92. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions.egg-info/not-zip-safe +0 -0
  93. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions.egg-info/requires.txt +0 -0
  94. {bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions.egg-info/top_level.txt +0 -0
  95. {bioversions-0.5.267 → bioversions-0.5.268}/tests/test_bioversions.py +0 -0
{bioversions-0.5.267/src/bioversions.egg-info → bioversions-0.5.268}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bioversions
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- Version: 0.5.267
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+ Version: 0.5.268
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  Summary: What's the current version for each biological database?
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.267 → bioversions-0.5.268}/docs/_data/versions.yml RENAMED
@@ -1,7 +1,7 @@
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  annotations:
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  author: runner
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- date: '2023-10-24'
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- revision: 569
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+ date: '2023-10-25'
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+ revision: 570
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  database:
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  - name: A nomenclatural ontology for biological names
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  prefix: nomen
@@ -5746,6 +5746,8 @@ database:
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  version: '2023-10-23'
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  - retrieved: '2023-10-24'
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  version: '2023-10-24'
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+ - retrieved: '2023-10-25'
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+ version: '2023-10-25'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -7661,6 +7663,8 @@ database:
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  version: '2023-10-21'
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  - retrieved: '2023-10-24'
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  version: '2023-10-22'
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+ - retrieved: '2023-10-25'
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+ version: '2023-10-23'
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
{bioversions-0.5.267 → bioversions-0.5.268}/docs/failures.md RENAMED
@@ -1,4 +1,6 @@
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  # Errors
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  - failed to resolve Antibody Registry
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- - issue parsing Ensembl: Issue in EnsemblGetter with date July 2023 and fmt %b %Y
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+ - issue parsing Ensembl: Issue in EnsemblGetter with date July 2023 and fmt %b %Y
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+ - issue parsing ITIS:
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+ - failed to resolve OncoTree
{bioversions-0.5.267 → bioversions-0.5.268}/docs/img/has_release_url.svg RENAMED
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-10-24T00:45:34.669016</dc:date>
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+ <dc:date>2023-10-25T00:45:31.571026</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
{bioversions-0.5.267 → bioversions-0.5.268}/docs/img/version_date_types.svg RENAMED
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-10-24T00:45:34.567711</dc:date>
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+ <dc:date>2023-10-25T00:45:31.508869</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
{bioversions-0.5.267 → bioversions-0.5.268}/docs/img/version_types.svg RENAMED
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-10-24T00:45:34.420080</dc:date>
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+ <dc:date>2023-10-25T00:45:31.413634</dc:date>
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  <dc:format>image/svg+xml</dc:format>
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  <dc:creator>
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  <cc:Agent>
{bioversions-0.5.267 → bioversions-0.5.268}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
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  [metadata]
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  name = bioversions
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- version = 0.5.267
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+ version = 0.5.268
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  description = What's the current version for each biological database?
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  long_description = file: README.md
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  long_description_content_type = text/markdown
{bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/resources/versions.json RENAMED
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  {
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  "annotations": {
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- "revision": 569,
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- "date": "2023-10-24",
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+ "revision": 570,
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+ "date": "2023-10-25",
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  "author": "runner"
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  },
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  "database": [
@@ -10595,6 +10595,10 @@
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  {
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  "retrieved": "2023-10-24",
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  "version": "2023-10-24"
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+ },
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+ {
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+ "retrieved": "2023-10-25",
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  }
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  ],
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  "name": "SwissLipids",
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  {
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  "retrieved": "2023-10-24",
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  "version": "2023-10-22"
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+ },
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+ "retrieved": "2023-10-25",
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  }
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  "name": "Zebrafish Information Network",
{bioversions-0.5.267 → bioversions-0.5.268}/src/bioversions/version.py RENAMED
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  "VERSION",
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  ]
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- VERSION = "0.5.267"
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+ VERSION = "0.5.268"
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  def get_git_hash() -> str:
{bioversions-0.5.267 → bioversions-0.5.268/src/bioversions.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bioversions
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- Version: 0.5.267
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+ Version: 0.5.268
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  Summary: What's the current version for each biological database?
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  Home-page: https://github.com/biopragmatics/bioversions
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  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.267 → bioversions-0.5.268}/LICENSE RENAMED
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{bioversions-0.5.267 → bioversions-0.5.268}/MANIFEST.in RENAMED
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{bioversions-0.5.267 → bioversions-0.5.268}/README.md RENAMED
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