bioversions 0.5.182__tar.gz → 0.5.184__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (96) hide show
  1. {bioversions-0.5.182/src/bioversions.egg-info → bioversions-0.5.184}/PKG-INFO +1 -1
  2. {bioversions-0.5.182 → bioversions-0.5.184}/docs/_data/versions.yml +21 -2
  3. bioversions-0.5.184/docs/failures.md +3 -0
  4. {bioversions-0.5.182 → bioversions-0.5.184}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.182 → bioversions-0.5.184}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.182 → bioversions-0.5.184}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.182 → bioversions-0.5.184}/setup.cfg +1 -1
  8. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/resources/versions.json +37 -2
  9. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.182 → bioversions-0.5.184/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.182/docs/failures.md +0 -4
  12. {bioversions-0.5.182 → bioversions-0.5.184}/LICENSE +0 -0
  13. {bioversions-0.5.182 → bioversions-0.5.184}/MANIFEST.in +0 -0
  14. {bioversions-0.5.182 → bioversions-0.5.184}/README.md +0 -0
  15. {bioversions-0.5.182 → bioversions-0.5.184}/docs/_config.yml +0 -0
  16. {bioversions-0.5.182 → bioversions-0.5.184}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.182 → bioversions-0.5.184}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.182 → bioversions-0.5.184}/docs/download.md +0 -0
  19. {bioversions-0.5.182 → bioversions-0.5.184}/docs/index.md +0 -0
  20. {bioversions-0.5.182 → bioversions-0.5.184}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.182 → bioversions-0.5.184}/docs/summary.md +0 -0
  22. {bioversions-0.5.182 → bioversions-0.5.184}/pyproject.toml +0 -0
  23. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/biofacquim.py +0 -0
  35. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/biogrid.py +0 -0
  36. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/cellosaurus.py +0 -0
  37. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/chebi.py +0 -0
  38. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/chembl.py +0 -0
  39. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/chemidplus.py +0 -0
  40. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/intact.py +0 -0
  54. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/interpro.py +0 -0
  55. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/itis.py +0 -0
  56. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/kegg.py +0 -0
  57. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/mesh.py +0 -0
  58. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/mirbase.py +0 -0
  59. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/moalmanac.py +0 -0
  60. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/msigdb.py +0 -0
  61. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/ncit.py +0 -0
  62. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/npass.py +0 -0
  63. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/obo.py +0 -0
  64. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/ols.py +0 -0
  65. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/oncotree.py +0 -0
  66. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/pathbank.py +0 -0
  67. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/pathwaycommons.py +0 -0
  68. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/pfam.py +0 -0
  69. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/pombase.py +0 -0
  70. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/pr.py +0 -0
  71. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/pubchem.py +0 -0
  72. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/reactome.py +0 -0
  73. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/rfam.py +0 -0
  74. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/rgd.py +0 -0
  75. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/rhea.py +0 -0
  76. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/rxnorm.py +0 -0
  77. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/sgd.py +0 -0
  78. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/slm.py +0 -0
  79. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/stringdb.py +0 -0
  80. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/umls.py +0 -0
  81. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/uniprot.py +0 -0
  82. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/unversioned.py +0 -0
  83. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/wikipathways.py +0 -0
  84. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/sources/zfin.py +0 -0
  85. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/templates/base.html +0 -0
  86. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/templates/home.html +0 -0
  87. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/twitter_client.py +0 -0
  88. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/utils.py +0 -0
  89. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions/wsgi.py +0 -0
  90. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions.egg-info/SOURCES.txt +0 -0
  91. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions.egg-info/dependency_links.txt +0 -0
  92. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions.egg-info/entry_points.txt +0 -0
  93. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions.egg-info/not-zip-safe +0 -0
  94. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions.egg-info/requires.txt +0 -0
  95. {bioversions-0.5.182 → bioversions-0.5.184}/src/bioversions.egg-info/top_level.txt +0 -0
  96. {bioversions-0.5.182 → bioversions-0.5.184}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.182
3
+ Version: 0.5.184
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2023-07-03'
4
- revision: 484
3
+ date: '2023-07-05'
4
+ revision: 486
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -2497,6 +2497,8 @@ database:
2497
2497
  version: 26-Apr-2023
2498
2498
  - retrieved: '2023-05-31'
2499
2499
  version: 25-May-2023
2500
+ - retrieved: '2023-07-04'
2501
+ version: 28-Jun-2023
2500
2502
  vtype: date
2501
2503
  - name: KEGG
2502
2504
  prefix: kegg.pathway
@@ -4012,6 +4014,10 @@ database:
4012
4014
  homepage: https://www.pombase.org/data/releases/pombase-2023-06-01/
4013
4015
  retrieved: '2023-06-07'
4014
4016
  version: '2023-06-01'
4017
+ - date: '2023-07-01'
4018
+ homepage: https://www.pombase.org/data/releases/pombase-2023-07-01/
4019
+ retrieved: '2023-07-04'
4020
+ version: '2023-07-01'
4015
4021
  vtype: date
4016
4022
  - name: Population and Community Ontology
4017
4023
  prefix: pco
@@ -4246,6 +4252,8 @@ database:
4246
4252
  version: '2023-06-16'
4247
4253
  - retrieved: '2023-06-27'
4248
4254
  version: '2023-06-23'
4255
+ - retrieved: '2023-07-04'
4256
+ version: '2023-06-30'
4249
4257
  vtype: date
4250
4258
  - name: Rat Strain Ontology
4251
4259
  prefix: rs
@@ -4471,6 +4479,9 @@ database:
4471
4479
  - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_06052023.zip
4472
4480
  retrieved: '2023-06-06'
4473
4481
  version: '2023-06-05'
4482
+ - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_07032023.zip
4483
+ retrieved: '2023-07-04'
4484
+ version: '2023-07-03'
4474
4485
  vtype: date
4475
4486
  - name: Saccharomyces Genome Database
4476
4487
  prefix: sgd
@@ -5283,6 +5294,10 @@ database:
5283
5294
  releases:
5284
5295
  - retrieved: '2023-07-03'
5285
5296
  version: '2023-07-03'
5297
+ - retrieved: '2023-07-04'
5298
+ version: '2023-07-04'
5299
+ - retrieved: '2023-07-05'
5300
+ version: '2023-07-05'
5286
5301
  vtype: date
5287
5302
  - name: SWO (The Software Ontology)
5288
5303
  prefix: swo
@@ -7004,6 +7019,10 @@ database:
7004
7019
  version: '2023-06-28'
7005
7020
  - retrieved: '2023-07-02'
7006
7021
  version: '2023-07-01'
7022
+ - retrieved: '2023-07-04'
7023
+ version: '2023-07-02'
7024
+ - retrieved: '2023-07-05'
7025
+ version: '2023-07-03'
7007
7026
  vtype: date
7008
7027
  - name: Zebrafish Phenotype Ontology
7009
7028
  prefix: zp
@@ -0,0 +1,3 @@
1
+ # Errors
2
+
3
+ - failed to resolve Biofacquim
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-07-03T01:07:30.019516</dc:date>
9
+ <dc:date>2023-07-05T01:07:32.746107</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-07-03T01:07:29.954698</dc:date>
9
+ <dc:date>2023-07-05T01:07:32.687657</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-07-03T01:07:29.852244</dc:date>
9
+ <dc:date>2023-07-05T01:07:32.597253</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.182
3
+ version = 0.5.184
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 484,
4
- "date": "2023-07-03",
3
+ "revision": 486,
4
+ "date": "2023-07-05",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -4540,6 +4540,10 @@
4540
4540
  {
4541
4541
  "retrieved": "2023-05-31",
4542
4542
  "version": "25-May-2023"
4543
+ },
4544
+ {
4545
+ "retrieved": "2023-07-04",
4546
+ "version": "28-Jun-2023"
4543
4547
  }
4544
4548
  ],
4545
4549
  "name": "ITIS",
@@ -7294,6 +7298,12 @@
7294
7298
  "version": "2023-06-01",
7295
7299
  "homepage": "https://www.pombase.org/data/releases/pombase-2023-06-01/",
7296
7300
  "date": "2023-06-01"
7301
+ },
7302
+ {
7303
+ "retrieved": "2023-07-04",
7304
+ "version": "2023-07-01",
7305
+ "homepage": "https://www.pombase.org/data/releases/pombase-2023-07-01/",
7306
+ "date": "2023-07-01"
7297
7307
  }
7298
7308
  ],
7299
7309
  "name": "PomBase",
@@ -7726,6 +7736,10 @@
7726
7736
  {
7727
7737
  "retrieved": "2023-06-27",
7728
7738
  "version": "2023-06-23"
7739
+ },
7740
+ {
7741
+ "retrieved": "2023-07-04",
7742
+ "version": "2023-06-30"
7729
7743
  }
7730
7744
  ],
7731
7745
  "name": "Rat Genome Database",
@@ -8131,6 +8145,11 @@
8131
8145
  "retrieved": "2023-06-06",
8132
8146
  "version": "2023-06-05",
8133
8147
  "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_06052023.zip"
8148
+ },
8149
+ {
8150
+ "retrieved": "2023-07-04",
8151
+ "version": "2023-07-03",
8152
+ "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_07032023.zip"
8134
8153
  }
8135
8154
  ],
8136
8155
  "name": "RxNorm",
@@ -9735,6 +9754,14 @@
9735
9754
  {
9736
9755
  "retrieved": "2023-07-03",
9737
9756
  "version": "2023-07-03"
9757
+ },
9758
+ {
9759
+ "retrieved": "2023-07-04",
9760
+ "version": "2023-07-04"
9761
+ },
9762
+ {
9763
+ "retrieved": "2023-07-05",
9764
+ "version": "2023-07-05"
9738
9765
  }
9739
9766
  ],
9740
9767
  "name": "SwissLipids",
@@ -12771,6 +12798,14 @@
12771
12798
  {
12772
12799
  "retrieved": "2023-07-02",
12773
12800
  "version": "2023-07-01"
12801
+ },
12802
+ {
12803
+ "retrieved": "2023-07-04",
12804
+ "version": "2023-07-02"
12805
+ },
12806
+ {
12807
+ "retrieved": "2023-07-05",
12808
+ "version": "2023-07-03"
12774
12809
  }
12775
12810
  ],
12776
12811
  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.182"
12
+ VERSION = "0.5.184"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.182
3
+ Version: 0.5.184
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,4 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve Biofacquim
4
- - issue parsing ITIS:
File without changes
File without changes
File without changes