bioversions 0.5.181__tar.gz → 0.5.183__tar.gz

{bioversions-0.5.181/src/bioversions.egg-info → bioversions-0.5.183}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.181
+Version: 0.5.183
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -16,12 +16,11 @@ Classifier: Environment :: Console
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3.7
 Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3 :: Only
-Requires-Python: >=3.7
+Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 Provides-Extra: slack
 Provides-Extra: twitter

{bioversions-0.5.181 → bioversions-0.5.183}/docs/_data/versions.yml

@@ -1,7 +1,7 @@
 annotations:
   author: runner
-  date: '2023-07-02'
-  revision: 483
+  date: '2023-07-04'
+  revision: 485
 database:
 - name: A nomenclatural ontology for biological names
   prefix: nomen
@@ -2497,6 +2497,8 @@ database:
     version: 26-Apr-2023
   - retrieved: '2023-05-31'
     version: 25-May-2023
+  - retrieved: '2023-07-04'
+    version: 28-Jun-2023
   vtype: date
 - name: KEGG
   prefix: kegg.pathway
@@ -4012,6 +4014,10 @@ database:
     homepage: https://www.pombase.org/data/releases/pombase-2023-06-01/
     retrieved: '2023-06-07'
     version: '2023-06-01'
+  - date: '2023-07-01'
+    homepage: https://www.pombase.org/data/releases/pombase-2023-07-01/
+    retrieved: '2023-07-04'
+    version: '2023-07-01'
   vtype: date
 - name: Population and Community Ontology
   prefix: pco
@@ -4246,6 +4252,8 @@ database:
     version: '2023-06-16'
   - retrieved: '2023-06-27'
     version: '2023-06-23'
+  - retrieved: '2023-07-04'
+    version: '2023-06-30'
   vtype: date
 - name: Rat Strain Ontology
   prefix: rs
@@ -4471,6 +4479,9 @@ database:
   - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_06052023.zip
     retrieved: '2023-06-06'
     version: '2023-06-05'
+  - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_07032023.zip
+    retrieved: '2023-07-04'
+    version: '2023-07-03'
   vtype: date
 - name: Saccharomyces Genome Database
   prefix: sgd
@@ -5278,6 +5289,14 @@ database:
   - retrieved: '2023-07-02'
     version: '2023-07-02'
   vtype: date
+- name: SwissLipids
+  prefix: slm
+  releases:
+  - retrieved: '2023-07-03'
+    version: '2023-07-03'
+  - retrieved: '2023-07-04'
+    version: '2023-07-04'
+  vtype: date
 - name: SWO (The Software Ontology)
   prefix: swo
   releases:
@@ -6998,6 +7017,8 @@ database:
     version: '2023-06-28'
   - retrieved: '2023-07-02'
     version: '2023-07-01'
+  - retrieved: '2023-07-04'
+    version: '2023-07-02'
   vtype: date
 - name: Zebrafish Phenotype Ontology
   prefix: zp

{bioversions-0.5.181 → bioversions-0.5.183}/docs/img/has_release_url.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2023-07-02T08:23:35.361470</dc:date>
+    <dc:date>2023-07-04T01:07:36.279161</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.181 → bioversions-0.5.183}/docs/img/version_date_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2023-07-02T08:23:35.308297</dc:date>
+    <dc:date>2023-07-04T01:07:36.221912</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.181 → bioversions-0.5.183}/docs/img/version_types.svg

@@ -6,7 +6,7 @@
   <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    <cc:Work>
     <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
-    <dc:date>2023-07-02T08:23:35.225968</dc:date>
+    <dc:date>2023-07-04T01:07:36.132109</dc:date>
     <dc:format>image/svg+xml</dc:format>
     <dc:creator>
      <cc:Agent>

{bioversions-0.5.181 → bioversions-0.5.183}/pyproject.toml

@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta:__legacy__"
 
 [tool.black]
 line-length = 100
-target-version = ['py37', 'py38', 'py39', "py310"]
+target-version = ["py38", "py39", "py310", "py311"]
 
 [tool.isort]
 profile = "black"

{bioversions-0.5.181 → bioversions-0.5.183}/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = bioversions
-version = 0.5.181
+version = 0.5.183
 description = What's the current version for each biological database?
 long_description = file: README.md
 long_description_content_type = text/markdown
@@ -20,7 +20,6 @@ classifiers =
 	License :: OSI Approved :: MIT License
 	Operating System :: OS Independent
 	Programming Language :: Python
-	Programming Language :: Python :: 3.7
 	Programming Language :: Python :: 3.8
 	Programming Language :: Python :: 3.9
 	Programming Language :: Python :: 3.10
@@ -34,7 +33,7 @@ install_requires =
 	requests
 	requests_ftp
 	beautifulsoup4
-	cachier<2.2.0
+	cachier>=2.2.1
 	pystow>=0.1.0
 	click
 	click_default_group
@@ -47,7 +46,7 @@ install_requires =
 	lxml
 	psycopg2-binary
 zip_safe = false
-python_requires = >=3.7
+python_requires = >=3.8
 packages = find:
 package_dir = 
 	= src

{bioversions-0.5.181 → bioversions-0.5.183}/src/bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 483,
-    "date": "2023-07-02",
+    "revision": 485,
+    "date": "2023-07-04",
     "author": "runner"
   },
   "database": [
@@ -4540,6 +4540,10 @@
         {
           "retrieved": "2023-05-31",
           "version": "25-May-2023"
+        },
+        {
+          "retrieved": "2023-07-04",
+          "version": "28-Jun-2023"
         }
       ],
       "name": "ITIS",
@@ -7294,6 +7298,12 @@
           "version": "2023-06-01",
           "homepage": "https://www.pombase.org/data/releases/pombase-2023-06-01/",
           "date": "2023-06-01"
+        },
+        {
+          "retrieved": "2023-07-04",
+          "version": "2023-07-01",
+          "homepage": "https://www.pombase.org/data/releases/pombase-2023-07-01/",
+          "date": "2023-07-01"
         }
       ],
       "name": "PomBase",
@@ -7726,6 +7736,10 @@
         {
           "retrieved": "2023-06-27",
           "version": "2023-06-23"
+        },
+        {
+          "retrieved": "2023-07-04",
+          "version": "2023-06-30"
         }
       ],
       "name": "Rat Genome Database",
@@ -8131,6 +8145,11 @@
           "retrieved": "2023-06-06",
           "version": "2023-06-05",
           "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_06052023.zip"
+        },
+        {
+          "retrieved": "2023-07-04",
+          "version": "2023-07-03",
+          "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_07032023.zip"
         }
       ],
       "name": "RxNorm",
@@ -9730,6 +9749,21 @@
       "prefix": "swisslipid",
       "vtype": "date"
     },
+    {
+      "releases": [
+        {
+          "retrieved": "2023-07-03",
+          "version": "2023-07-03"
+        },
+        {
+          "retrieved": "2023-07-04",
+          "version": "2023-07-04"
+        }
+      ],
+      "name": "SwissLipids",
+      "prefix": "slm",
+      "vtype": "date"
+    },
     {
       "name": "SWO (The Software Ontology)",
       "prefix": "swo",
@@ -12760,6 +12794,10 @@
         {
           "retrieved": "2023-07-02",
           "version": "2023-07-01"
+        },
+        {
+          "retrieved": "2023-07-04",
+          "version": "2023-07-02"
         }
       ],
       "name": "Zebrafish Information Network",

{bioversions-0.5.181 → bioversions-0.5.183}/src/bioversions/sources/msigdb.py

@@ -25,7 +25,7 @@ class MSigDBGetter(Getter):
 
         x = soup.find(text="Current Version")
         paragraph = x.parent.find_next_sibling("p")
-        version = paragraph.text.strip().split()[2][len("v"):-len(".Hs")]
+        version = paragraph.text.strip().split()[2][len("v") : -len(".Hs")]
         return version
 
 

{bioversions-0.5.181 → bioversions-0.5.183}/src/bioversions/sources/slm.py

@@ -16,8 +16,8 @@ __all__ = [
 class SwissLipidGetter(Getter):
     """A getter for SwissLipids."""
 
-    bioregistry_id = "swisslipid"
-    name = "SwissLipid"
+    bioregistry_id = "slm"
+    name = "SwissLipids"
     version_type = VersionType.date
 
     def get(self):

{bioversions-0.5.181 → bioversions-0.5.183}/src/bioversions/sources/zfin.py

@@ -3,7 +3,6 @@
 """A getter for ZFIN."""
 
 from datetime import datetime
-from typing import Mapping
 
 from bioversions.utils import Getter, VersionType, get_soup
 
@@ -21,7 +20,7 @@ class ZfinGetter(Getter):
     name = "Zebrafish Information Network"
     version_type = VersionType.date
 
-    def get(self) -> Mapping[str, str]:
+    def get(self):
         """Get the latest ZFIN version number."""
         soup = get_soup(URL)
         header = soup.find("h2")

{bioversions-0.5.181 → bioversions-0.5.183}/src/bioversions/version.py

@@ -9,7 +9,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.5.181"
+VERSION = "0.5.183"
 
 
 def get_git_hash() -> str:

{bioversions-0.5.181 → bioversions-0.5.183/src/bioversions.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bioversions
-Version: 0.5.181
+Version: 0.5.183
 Summary: What's the current version for each biological database?
 Home-page: https://github.com/biopragmatics/bioversions
 Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -16,12 +16,11 @@ Classifier: Environment :: Console
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3.7
 Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3 :: Only
-Requires-Python: >=3.7
+Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 Provides-Extra: slack
 Provides-Extra: twitter

{bioversions-0.5.181 → bioversions-0.5.183}/src/bioversions.egg-info/requires.txt

@@ -1,7 +1,7 @@
 requests
 requests_ftp
 beautifulsoup4
-cachier<2.2.0
+cachier>=2.2.1
 pystow>=0.1.0
 click
 click_default_group