bioversions 0.5.155__tar.gz → 0.5.157__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (96) hide show
  1. {bioversions-0.5.155/src/bioversions.egg-info → bioversions-0.5.157}/PKG-INFO +1 -1
  2. {bioversions-0.5.155 → bioversions-0.5.157}/docs/_data/versions.yml +19 -2
  3. bioversions-0.5.157/docs/failures.md +4 -0
  4. {bioversions-0.5.155 → bioversions-0.5.157}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.155 → bioversions-0.5.157}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.155 → bioversions-0.5.157}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.155 → bioversions-0.5.157}/setup.cfg +1 -1
  8. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/resources/versions.json +33 -2
  9. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.155 → bioversions-0.5.157/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.155/docs/failures.md +0 -3
  12. {bioversions-0.5.155 → bioversions-0.5.157}/LICENSE +0 -0
  13. {bioversions-0.5.155 → bioversions-0.5.157}/MANIFEST.in +0 -0
  14. {bioversions-0.5.155 → bioversions-0.5.157}/README.md +0 -0
  15. {bioversions-0.5.155 → bioversions-0.5.157}/docs/_config.yml +0 -0
  16. {bioversions-0.5.155 → bioversions-0.5.157}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.155 → bioversions-0.5.157}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.155 → bioversions-0.5.157}/docs/download.md +0 -0
  19. {bioversions-0.5.155 → bioversions-0.5.157}/docs/index.md +0 -0
  20. {bioversions-0.5.155 → bioversions-0.5.157}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.155 → bioversions-0.5.157}/docs/summary.md +0 -0
  22. {bioversions-0.5.155 → bioversions-0.5.157}/pyproject.toml +0 -0
  23. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/biofacquim.py +0 -0
  35. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/biogrid.py +0 -0
  36. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/cellosaurus.py +0 -0
  37. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/chebi.py +0 -0
  38. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/chembl.py +0 -0
  39. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/chemidplus.py +0 -0
  40. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/intact.py +0 -0
  54. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/interpro.py +0 -0
  55. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/itis.py +0 -0
  56. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/kegg.py +0 -0
  57. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/mesh.py +0 -0
  58. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/mirbase.py +0 -0
  59. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/moalmanac.py +0 -0
  60. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/msigdb.py +0 -0
  61. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/ncit.py +0 -0
  62. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/npass.py +0 -0
  63. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/obo.py +0 -0
  64. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/ols.py +0 -0
  65. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/oncotree.py +0 -0
  66. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/pathbank.py +0 -0
  67. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/pathwaycommons.py +0 -0
  68. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/pfam.py +0 -0
  69. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/pombase.py +0 -0
  70. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/pr.py +0 -0
  71. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/pubchem.py +0 -0
  72. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/reactome.py +0 -0
  73. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/rfam.py +0 -0
  74. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/rgd.py +0 -0
  75. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/rhea.py +0 -0
  76. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/rxnorm.py +0 -0
  77. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/sgd.py +0 -0
  78. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/slm.py +0 -0
  79. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/stringdb.py +0 -0
  80. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/umls.py +0 -0
  81. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/uniprot.py +0 -0
  82. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/unversioned.py +0 -0
  83. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/wikipathways.py +0 -0
  84. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/sources/zfin.py +0 -0
  85. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/templates/base.html +0 -0
  86. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/templates/home.html +0 -0
  87. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/twitter_client.py +0 -0
  88. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/utils.py +0 -0
  89. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions/wsgi.py +0 -0
  90. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions.egg-info/SOURCES.txt +0 -0
  91. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions.egg-info/dependency_links.txt +0 -0
  92. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions.egg-info/entry_points.txt +0 -0
  93. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions.egg-info/not-zip-safe +0 -0
  94. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions.egg-info/requires.txt +0 -0
  95. {bioversions-0.5.155 → bioversions-0.5.157}/src/bioversions.egg-info/top_level.txt +0 -0
  96. {bioversions-0.5.155 → bioversions-0.5.157}/tests/test_bioversions.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.155
3
+ Version: 0.5.157
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2023-06-05'
4
- revision: 457
3
+ date: '2023-06-07'
4
+ revision: 459
5
5
  database:
6
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  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -3882,6 +3882,10 @@ database:
3882
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  homepage: https://www.pombase.org/data/releases/pombase-2023-05-01/
3883
3883
  retrieved: '2023-05-16'
3884
3884
  version: '2023-05-01'
3885
+ - date: '2023-06-01'
3886
+ homepage: https://www.pombase.org/data/releases/pombase-2023-06-01/
3887
+ retrieved: '2023-06-07'
3888
+ version: '2023-06-01'
3885
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  vtype: date
3886
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  - name: Population and Community Ontology
3887
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  prefix: pco
@@ -4103,6 +4107,8 @@ database:
4103
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  version: '2023-05-12'
4104
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  - retrieved: '2023-05-23'
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  version: '2023-05-19'
4110
+ - retrieved: '2023-06-06'
4111
+ version: '2023-06-02'
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  vtype: date
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  - name: Rat Strain Ontology
4108
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  prefix: rs
@@ -4320,6 +4326,9 @@ database:
4320
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  - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_05012023.zip
4321
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  retrieved: '2023-05-02'
4322
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  version: '2023-05-01'
4329
+ - homepage: https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_06052023.zip
4330
+ retrieved: '2023-06-06'
4331
+ version: '2023-06-05'
4323
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  vtype: date
4324
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  - name: Saccharomyces Genome Database
4325
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  prefix: sgd
@@ -5074,6 +5083,10 @@ database:
5074
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  version: '2023-06-04'
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  - retrieved: '2023-06-05'
5076
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  version: '2023-06-05'
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+ - retrieved: '2023-06-06'
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+ version: '2023-06-06'
5088
+ - retrieved: '2023-06-07'
5089
+ version: '2023-06-07'
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  vtype: date
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  - name: SWO (The Software Ontology)
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  prefix: swo
@@ -6723,6 +6736,10 @@ database:
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  version: '2023-06-02'
6724
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  - retrieved: '2023-06-05'
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  version: '2023-06-03'
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+ - retrieved: '2023-06-06'
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+ version: '2023-06-04'
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+ - retrieved: '2023-06-07'
6742
+ version: '2023-06-05'
6726
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  vtype: date
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  - name: Zebrafish Phenotype Ontology
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  prefix: zp
@@ -0,0 +1,4 @@
1
+ # Errors
2
+
3
+ - failed to resolve Biofacquim
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+ - failed to resolve OncoTree
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-06-05T00:59:50.164941</dc:date>
9
+ <dc:date>2023-06-07T01:07:31.961553</dc:date>
10
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
6
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-06-05T00:59:50.107164</dc:date>
9
+ <dc:date>2023-06-07T01:07:31.904487</dc:date>
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -6,7 +6,7 @@
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  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
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  <cc:Work>
8
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  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
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- <dc:date>2023-06-05T00:59:50.017950</dc:date>
9
+ <dc:date>2023-06-07T01:07:31.816120</dc:date>
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  <dc:format>image/svg+xml</dc:format>
11
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  <dc:creator>
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  <cc:Agent>
@@ -1,6 +1,6 @@
1
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  [metadata]
2
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  name = bioversions
3
- version = 0.5.155
3
+ version = 0.5.157
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
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  long_description_content_type = text/markdown
@@ -1,7 +1,7 @@
1
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  {
2
2
  "annotations": {
3
- "revision": 457,
4
- "date": "2023-06-05",
3
+ "revision": 459,
4
+ "date": "2023-06-07",
5
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  "author": "runner"
6
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  },
7
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  "database": [
@@ -7057,6 +7057,12 @@
7057
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  "version": "2023-05-01",
7058
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  "homepage": "https://www.pombase.org/data/releases/pombase-2023-05-01/",
7059
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  "date": "2023-05-01"
7060
+ },
7061
+ {
7062
+ "retrieved": "2023-06-07",
7063
+ "version": "2023-06-01",
7064
+ "homepage": "https://www.pombase.org/data/releases/pombase-2023-06-01/",
7065
+ "date": "2023-06-01"
7060
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  }
7061
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  ],
7062
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  "name": "PomBase",
@@ -7464,6 +7470,10 @@
7464
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  {
7465
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  "retrieved": "2023-05-23",
7466
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  "version": "2023-05-19"
7473
+ },
7474
+ {
7475
+ "retrieved": "2023-06-06",
7476
+ "version": "2023-06-02"
7467
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  }
7468
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  ],
7469
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  "name": "Rat Genome Database",
@@ -7855,6 +7865,11 @@
7855
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  "retrieved": "2023-05-02",
7856
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  "version": "2023-05-01",
7857
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  "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_05012023.zip"
7868
+ },
7869
+ {
7870
+ "retrieved": "2023-06-06",
7871
+ "version": "2023-06-05",
7872
+ "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_06052023.zip"
7858
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  }
7859
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  ],
7860
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  "name": "RxNorm",
@@ -9344,6 +9359,14 @@
9344
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  {
9345
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  "retrieved": "2023-06-05",
9346
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  "version": "2023-06-05"
9362
+ },
9363
+ {
9364
+ "retrieved": "2023-06-06",
9365
+ "version": "2023-06-06"
9366
+ },
9367
+ {
9368
+ "retrieved": "2023-06-07",
9369
+ "version": "2023-06-07"
9347
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  }
9348
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  ],
9349
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  "name": "SwissLipid",
@@ -12240,6 +12263,14 @@
12240
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  {
12241
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  "retrieved": "2023-06-05",
12242
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  "version": "2023-06-03"
12266
+ },
12267
+ {
12268
+ "retrieved": "2023-06-06",
12269
+ "version": "2023-06-04"
12270
+ },
12271
+ {
12272
+ "retrieved": "2023-06-07",
12273
+ "version": "2023-06-05"
12243
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  }
12244
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  ],
12245
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  "name": "Zebrafish Information Network",
@@ -9,7 +9,7 @@ __all__ = [
9
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  "VERSION",
10
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  ]
11
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12
- VERSION = "0.5.155"
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+ VERSION = "0.5.157"
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14
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15
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  def get_git_hash() -> str:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.155
3
+ Version: 0.5.157
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
@@ -1,3 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve Biofacquim
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