bioversions 0.5.153__tar.gz → 0.5.154__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (96) hide show
  1. {bioversions-0.5.153/src/bioversions.egg-info → bioversions-0.5.154}/PKG-INFO +1 -1
  2. {bioversions-0.5.153 → bioversions-0.5.154}/docs/_data/versions.yml +6 -2
  3. bioversions-0.5.154/docs/failures.md +4 -0
  4. {bioversions-0.5.153 → bioversions-0.5.154}/docs/img/has_release_url.svg +1 -1
  5. {bioversions-0.5.153 → bioversions-0.5.154}/docs/img/version_date_types.svg +1 -1
  6. {bioversions-0.5.153 → bioversions-0.5.154}/docs/img/version_types.svg +1 -1
  7. {bioversions-0.5.153 → bioversions-0.5.154}/setup.cfg +1 -1
  8. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/resources/versions.json +10 -2
  9. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/version.py +1 -1
  10. {bioversions-0.5.153 → bioversions-0.5.154/src/bioversions.egg-info}/PKG-INFO +1 -1
  11. bioversions-0.5.153/docs/failures.md +0 -3
  12. {bioversions-0.5.153 → bioversions-0.5.154}/LICENSE +0 -0
  13. {bioversions-0.5.153 → bioversions-0.5.154}/MANIFEST.in +0 -0
  14. {bioversions-0.5.153 → bioversions-0.5.154}/README.md +0 -0
  15. {bioversions-0.5.153 → bioversions-0.5.154}/docs/_config.yml +0 -0
  16. {bioversions-0.5.153 → bioversions-0.5.154}/docs/_includes/footer.html +0 -0
  17. {bioversions-0.5.153 → bioversions-0.5.154}/docs/_includes/head.html +0 -0
  18. {bioversions-0.5.153 → bioversions-0.5.154}/docs/download.md +0 -0
  19. {bioversions-0.5.153 → bioversions-0.5.154}/docs/index.md +0 -0
  20. {bioversions-0.5.153 → bioversions-0.5.154}/docs/source/logo.png +0 -0
  21. {bioversions-0.5.153 → bioversions-0.5.154}/docs/summary.md +0 -0
  22. {bioversions-0.5.153 → bioversions-0.5.154}/pyproject.toml +0 -0
  23. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/__init__.py +0 -0
  24. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/__main__.py +0 -0
  25. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/charts.py +0 -0
  26. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/cli.py +0 -0
  27. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/py.typed +0 -0
  28. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/resources/__init__.py +0 -0
  29. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/resources/update.py +0 -0
  30. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/slack_client.py +0 -0
  31. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/__init__.py +0 -0
  32. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/antibodyregistry.py +0 -0
  33. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/bigg.py +0 -0
  34. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/biofacquim.py +0 -0
  35. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/biogrid.py +0 -0
  36. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/cellosaurus.py +0 -0
  37. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/chebi.py +0 -0
  38. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/chembl.py +0 -0
  39. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/chemidplus.py +0 -0
  40. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/complexportal.py +0 -0
  41. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/daily.py +0 -0
  42. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/depmap.py +0 -0
  43. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/dgi.py +0 -0
  44. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/disgenet.py +0 -0
  45. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/drugbank.py +0 -0
  46. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/drugcentral.py +0 -0
  47. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/ensembl.py +0 -0
  48. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/expasy.py +0 -0
  49. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/flybase.py +0 -0
  50. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/guidetopharmacology.py +0 -0
  51. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/hgnc.py +0 -0
  52. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/homologene.py +0 -0
  53. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/intact.py +0 -0
  54. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/interpro.py +0 -0
  55. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/itis.py +0 -0
  56. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/kegg.py +0 -0
  57. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/mesh.py +0 -0
  58. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/mirbase.py +0 -0
  59. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/moalmanac.py +0 -0
  60. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/msigdb.py +0 -0
  61. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/ncit.py +0 -0
  62. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/npass.py +0 -0
  63. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/obo.py +0 -0
  64. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/ols.py +0 -0
  65. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/oncotree.py +0 -0
  66. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/pathbank.py +0 -0
  67. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/pathwaycommons.py +0 -0
  68. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/pfam.py +0 -0
  69. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/pombase.py +0 -0
  70. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/pr.py +0 -0
  71. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/pubchem.py +0 -0
  72. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/reactome.py +0 -0
  73. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/rfam.py +0 -0
  74. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/rgd.py +0 -0
  75. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/rhea.py +0 -0
  76. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/rxnorm.py +0 -0
  77. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/sgd.py +0 -0
  78. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/slm.py +0 -0
  79. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/stringdb.py +0 -0
  80. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/umls.py +0 -0
  81. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/uniprot.py +0 -0
  82. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/unversioned.py +0 -0
  83. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/wikipathways.py +0 -0
  84. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/sources/zfin.py +0 -0
  85. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/templates/base.html +0 -0
  86. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/templates/home.html +0 -0
  87. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/twitter_client.py +0 -0
  88. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/utils.py +0 -0
  89. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/wsgi.py +0 -0
  90. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions.egg-info/SOURCES.txt +0 -0
  91. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions.egg-info/dependency_links.txt +0 -0
  92. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions.egg-info/entry_points.txt +0 -0
  93. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions.egg-info/not-zip-safe +0 -0
  94. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions.egg-info/requires.txt +0 -0
  95. {bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions.egg-info/top_level.txt +0 -0
  96. {bioversions-0.5.153 → bioversions-0.5.154}/tests/test_bioversions.py +0 -0
{bioversions-0.5.153/src/bioversions.egg-info → bioversions-0.5.154}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.153
3
+ Version: 0.5.154
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
{bioversions-0.5.153 → bioversions-0.5.154}/docs/_data/versions.yml RENAMED
@@ -1,7 +1,7 @@
1
1
  annotations:
2
2
  author: runner
3
- date: '2023-06-03'
4
- revision: 455
3
+ date: '2023-06-04'
4
+ revision: 456
5
5
  database:
6
6
  - name: A nomenclatural ontology for biological names
7
7
  prefix: nomen
@@ -5070,6 +5070,8 @@ database:
5070
5070
  version: '2023-06-02'
5071
5071
  - retrieved: '2023-06-03'
5072
5072
  version: '2023-06-03'
5073
+ - retrieved: '2023-06-04'
5074
+ version: '2023-06-04'
5073
5075
  vtype: date
5074
5076
  - name: SWO (The Software Ontology)
5075
5077
  prefix: swo
@@ -6715,6 +6717,8 @@ database:
6715
6717
  version: '2023-05-31'
6716
6718
  - retrieved: '2023-06-03'
6717
6719
  version: '2023-06-01'
6720
+ - retrieved: '2023-06-04'
6721
+ version: '2023-06-02'
6718
6722
  vtype: date
6719
6723
  - name: Zebrafish Phenotype Ontology
6720
6724
  prefix: zp
bioversions-0.5.154/docs/failures.md ADDED
@@ -0,0 +1,4 @@
1
+ # Errors
2
+
3
+ - failed to resolve Biofacquim
4
+ - issue parsing Disease Ontology: No data-version line contained in http://purl.obolibrary.org/obo/DOID.obo
{bioversions-0.5.153 → bioversions-0.5.154}/docs/img/has_release_url.svg RENAMED
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-06-03T00:58:57.571510</dc:date>
9
+ <dc:date>2023-06-04T01:08:24.518065</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
{bioversions-0.5.153 → bioversions-0.5.154}/docs/img/version_date_types.svg RENAMED
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-06-03T00:58:57.517251</dc:date>
9
+ <dc:date>2023-06-04T01:08:24.465097</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
{bioversions-0.5.153 → bioversions-0.5.154}/docs/img/version_types.svg RENAMED
@@ -6,7 +6,7 @@
6
6
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
7
7
  <cc:Work>
8
8
  <dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
9
- <dc:date>2023-06-03T00:58:57.435328</dc:date>
9
+ <dc:date>2023-06-04T01:08:24.384461</dc:date>
10
10
  <dc:format>image/svg+xml</dc:format>
11
11
  <dc:creator>
12
12
  <cc:Agent>
{bioversions-0.5.153 → bioversions-0.5.154}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = bioversions
3
- version = 0.5.153
3
+ version = 0.5.154
4
4
  description = What's the current version for each biological database?
5
5
  long_description = file: README.md
6
6
  long_description_content_type = text/markdown
{bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/resources/versions.json RENAMED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "annotations": {
3
- "revision": 455,
4
- "date": "2023-06-03",
3
+ "revision": 456,
4
+ "date": "2023-06-04",
5
5
  "author": "runner"
6
6
  },
7
7
  "database": [
@@ -9336,6 +9336,10 @@
9336
9336
  {
9337
9337
  "retrieved": "2023-06-03",
9338
9338
  "version": "2023-06-03"
9339
+ },
9340
+ {
9341
+ "retrieved": "2023-06-04",
9342
+ "version": "2023-06-04"
9339
9343
  }
9340
9344
  ],
9341
9345
  "name": "SwissLipid",
@@ -12224,6 +12228,10 @@
12224
12228
  {
12225
12229
  "retrieved": "2023-06-03",
12226
12230
  "version": "2023-06-01"
12231
+ },
12232
+ {
12233
+ "retrieved": "2023-06-04",
12234
+ "version": "2023-06-02"
12227
12235
  }
12228
12236
  ],
12229
12237
  "name": "Zebrafish Information Network",
{bioversions-0.5.153 → bioversions-0.5.154}/src/bioversions/version.py RENAMED
@@ -9,7 +9,7 @@ __all__ = [
9
9
  "VERSION",
10
10
  ]
11
11
 
12
- VERSION = "0.5.153"
12
+ VERSION = "0.5.154"
13
13
 
14
14
 
15
15
  def get_git_hash() -> str:
{bioversions-0.5.153 → bioversions-0.5.154/src/bioversions.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: bioversions
3
- Version: 0.5.153
3
+ Version: 0.5.154
4
4
  Summary: What's the current version for each biological database?
5
5
  Home-page: https://github.com/biopragmatics/bioversions
6
6
  Download-URL: https://github.com/biopragmatics/bioversions/releases
bioversions-0.5.153/docs/failures.md DELETED
@@ -1,3 +0,0 @@
1
- # Errors
2
-
3
- - failed to resolve Biofacquim
{bioversions-0.5.153 → bioversions-0.5.154}/LICENSE RENAMED
File without changes
{bioversions-0.5.153 → bioversions-0.5.154}/MANIFEST.in RENAMED
File without changes
{bioversions-0.5.153 → bioversions-0.5.154}/README.md RENAMED
File without changes