bioregistry 0.13.7__tar.gz → 0.13.8__tar.gz

{bioregistry-0.13.7 → bioregistry-0.13.8}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.7
+Version: 0.13.8
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt

{bioregistry-0.13.7 → bioregistry-0.13.8}/pyproject.toml

@@ -10,7 +10,7 @@ markers = [
 
 [project]
 name = "bioregistry"
-version = "0.13.7"
+version = "0.13.8"
 description = "Integrated registry of biological databases and nomenclatures"
 readme = "README.md"
 authors = [
@@ -254,7 +254,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.13.7"
+current_version = "0.13.8"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/data/bioregistry.json

@@ -1534,9 +1534,7 @@
       "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
       "name": "Anatomical Entity Ontology",
       "prefix": "aeo",
-      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
-      "version": "2014-12-05",
-      "version.iri": "http://purl.obolibrary.org/obo/aeo/releases/2014-12-05/aeo.owl"
+      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
     },
     "ontobee": {
       "library": "Library",
@@ -38959,9 +38957,7 @@
       "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology",
       "name": "Human developmental anatomy, abstract",
       "prefix": "ehdaa2",
-      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
-      "version": "2013-07-04",
-      "version.iri": "http://purl.obolibrary.org/obo/ehdaa2/releases/2013-07-04/ehdaa2.owl"
+      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
     },
     "ontobee": {
       "library": "Library",
@@ -39257,7 +39253,7 @@
     "bartoc": {
       "abbreviation": "EMAPA",
       "description": "The ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of the Edinburgh Mouse Atlas Project (EMAP) (http://www.emouseatlas.org) in order to provide a structured controlled vocabulary of stage-specific anatomical structures for the developing laboratory mouse.\n\nThe developmental mouse anatomy ontology has subsequently been substantially extended and refined in a collaborative effort between EMAP and the Gene Expression Database (GXD) project, part of the Mouse Genome Informatics (MGI) resource at The Jackson Laboratory. Both GXD and the Edinburgh Mouse Atlas of Gene Expression (EMAGE) database project currently use this anatomy ontology to describe patterns of gene expression in the mouse embryo.\n\nPrevious versions, such as the one posted on the OBO Foundry site under the filename EMAP.obo, listed the anatomical entities for each developmental stage (Theiler Stages 1 through 26) separately. Stage-specific instances were presented as uniparental hierarchical trees organized using part-of relationships only (i.e. as a strict partonomy). These hierarchies have been used for annotation of expression in both the EMAGE and GXD databases, and the associated identifiers for the stage-specific instances are preserved.",
-      "homepage": "http://www.obofoundry.org/wiki/index.php/EMAPA:Main_Page",
+      "homepage": "https://obofoundry.org/ontology/emapa.html",
       "name": "Ontology of Mouse Developmental Anatomy",
       "prefix": "549"
     },
@@ -46230,9 +46226,7 @@
       "download_owl": "http://purl.obolibrary.org/obo/fix.owl",
       "homepage": "http://www.ebi.ac.uk/chebi",
       "name": "Physico-chemical methods and properties",
-      "prefix": "fix",
-      "version": "2020-04-13",
-      "version.iri": "http://purl.obolibrary.org/obo/fix/releases/2020-04-13/fix.owl"
+      "prefix": "fix"
     },
     "ontobee": {
       "library": "Library",
@@ -47448,9 +47442,7 @@
       "homepage": "http://si.washington.edu/projects/fma",
       "name": "Foundational Model of Anatomy Ontology (subset)",
       "prefix": "fma",
-      "tracker": "https://bitbucket.org/uwsig/fma/issues",
-      "version": "2020-04-13",
-      "version.iri": "http://purl.obolibrary.org/obo/fma/releases/2020-04-13/fma.owl"
+      "tracker": "https://bitbucket.org/uwsig/fma/issues"
     },
     "ontobee": {
       "library": "Library",
@@ -59667,9 +59659,7 @@
       "homepage": "https://github.com/BgeeDB/homology-ontology",
       "name": "Homology Ontology",
       "prefix": "hom",
-      "tracker": "https://github.com/BgeeDB/homology-ontology/issues",
-      "version": "2015-01-07",
-      "version.iri": "http://purl.obolibrary.org/obo/hom/releases/2015-01-07/hom.owl"
+      "tracker": "https://github.com/BgeeDB/homology-ontology/issues"
     },
     "ontobee": {
       "library": "Library",
@@ -74597,9 +74587,7 @@
       "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
       "name": "Mouse adult gross anatomy",
       "prefix": "ma",
-      "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
-      "version": "2017-02-07",
-      "version.iri": "http://purl.obolibrary.org/obo/ma/releases/2017-02-07/ma.owl"
+      "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues"
     },
     "ontobee": {
       "library": "Library",
@@ -84465,8 +84453,8 @@
       "name": "Mass spectrometry ontology",
       "prefix": "ms",
       "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-      "version": "4.1.214",
-      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.214/ms.owl"
+      "version": "4.1.215",
+      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.215/ms.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -112795,9 +112783,7 @@
       "description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.",
       "download_owl": "http://purl.obolibrary.org/obo/rex.owl",
       "name": "Physico-chemical process",
-      "prefix": "rex",
-      "version": "2017-11-19",
-      "version.iri": "http://purl.obolibrary.org/obo/rex/releases/2017-11-19/rex.owl"
+      "prefix": "rex"
     },
     "ontobee": {
       "library": "Library",
@@ -129393,7 +129379,7 @@
         "https://planteome.org/references"
       ],
       "repository": "https://github.com/Planteome/plant-trait-ontology",
-      "version": "May 2025"
+      "version": "November 2025"
     },
     "biocontext": {
       "prefix": "TO"
@@ -137573,8 +137559,8 @@
       "name": "The Vertebrate Trait Ontology",
       "prefix": "vt",
       "tracker": "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues",
-      "version": "2025-11-11",
-      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-11-11/vt.owl"
+      "version": "2025-11-18",
+      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-11-18/vt.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -142151,9 +142137,7 @@
       "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
       "name": "Zebrafish developmental stages ontology",
       "prefix": "zfs",
-      "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues",
-      "version": "2020-03-10",
-      "version.iri": "http://purl.obolibrary.org/obo/zfs/releases/2020-03-10/zfs.owl"
+      "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues"
     },
     "ontobee": {
       "library": "Library",

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/external/bartoc/processed.json

@@ -8382,7 +8382,6 @@
     "prefix": "18286"
   },
   "18287": {
-    "homepage": "http://salt.semanticauthoring.org/ontologies/sro",
     "name": "SALT Rhetorical Ontology",
     "prefix": "18287"
   },
@@ -9268,6 +9267,7 @@
     "prefix": "18433"
   },
   "18434": {
+    "description": "Duplicate of https://bartoc.org/en/node/427",
     "homepage": "https://finto.fi/afo/",
     "license": "CC-BY-3.0",
     "name": "Natural resource and environment ontology",
@@ -21349,7 +21349,7 @@
   },
   "546": {
     "description": "The Minimal Anatomy Terminology (MAT) is an OBO format terminology using broader-than relationships designed for annotating and searching tissue-associated data and timelines from organisms. Identifiers from >20 anatomy ontologies are mapped to each MAT term to facilitate access to and interoperability across tissue-associated data resources.",
-    "homepage": "http://www.ebi.ac.uk/microarray-srv/mat/",
+    "homepage": "https://bioportal.bioontology.org/ontologies/MAT",
     "name": "Minimal Anatomy Terminology",
     "prefix": "546"
   },
@@ -21362,14 +21362,14 @@
   },
   "548": {
     "description": "MeGO is a Gene Ontology under construction dedicated to the functions of mobile genetic elements. The terms defined in MeGO are used to annotate phage and plasmid protein families in ACLAME.\n\nPlease note that some terms in the ontology are there transiently as markers or awaiting future incorporation in the sequence ontology (SO). The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up.",
-    "homepage": "http://aclame.ulb.ac.be/Classification/mego.html",
+    "homepage": "https://bioportal.bioontology.org/ontologies/MEGO",
     "name": "Mobile Genetic Element Ontology",
     "prefix": "548"
   },
   "549": {
     "abbreviation": "EMAPA",
     "description": "The ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of the Edinburgh Mouse Atlas Project (EMAP) (http://www.emouseatlas.org) in order to provide a structured controlled vocabulary of stage-specific anatomical structures for the developing laboratory mouse.\n\nThe developmental mouse anatomy ontology has subsequently been substantially extended and refined in a collaborative effort between EMAP and the Gene Expression Database (GXD) project, part of the Mouse Genome Informatics (MGI) resource at The Jackson Laboratory. Both GXD and the Edinburgh Mouse Atlas of Gene Expression (EMAGE) database project currently use this anatomy ontology to describe patterns of gene expression in the mouse embryo.\n\nPrevious versions, such as the one posted on the OBO Foundry site under the filename EMAP.obo, listed the anatomical entities for each developmental stage (Theiler Stages 1 through 26) separately. Stage-specific instances were presented as uniparental hierarchical trees organized using part-of relationships only (i.e. as a strict partonomy). These hierarchies have been used for annotation of expression in both the EMAGE and GXD databases, and the associated identifiers for the stage-specific instances are preserved.",
-    "homepage": "http://www.obofoundry.org/wiki/index.php/EMAPA:Main_Page",
+    "homepage": "https://obofoundry.org/ontology/emapa.html",
     "name": "Ontology of Mouse Developmental Anatomy",
     "prefix": "549"
   },
@@ -21382,7 +21382,6 @@
   },
   "550": {
     "description": "Data generated from cancer nanotechnology research are so diverse and large in volume that it is difficult to share and efficiently use them without informatics tools. In particular, ontologies that provide a unifying knowledge framework for annotating the data are required to facilitate the semantic integration, knowledge-based searching, unambiguous interpretation, mining and inferencing of the data using informatics methods. Here, we discuss the design and development of NanoParticle Ontology (NPO), which is developed within the framework of the Basic Formal Ontology (BFO), and implemented in the Ontology Web Language (OWL) using well-defined ontology design principles. The NPO is developed to represent the knowledge underlying the description, preparation, and characterization of nanomaterials in cancer nanotechnology research.",
-    "homepage": "http://www.nano-ontology.org/",
     "name": "NanoParticle Ontology for Cancer Nanotechnology Research",
     "prefix": "550"
   },
@@ -21417,7 +21416,7 @@
     "prefix": "555"
   },
   "556": {
-    "description": "Using realistic ontology BFO as its top ontology's framwork, OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) that have a liner primary sequence sturcture. It is either a proper part of an chromosome or a RNA molecule or an artificial genetic interval.\"\n\nThe 'genetic sequence' is also formalized in OGI, the differences between 'genetic sequence' and 'genetic interval' is that, 'genetic squence' refers to a liner sequence with only primary structure, whereas 'genetic interval' refers to the 3D sequence in reality, which has not only 3D structure, but also need to have the 'genetic sequence' as its primary structure'. From this aspect we make a distinction between a modelled sequence and a real sequence object as realm.",
+    "description": "This ontology is deprecated!\"\n\n\"Using realistic ontology BFO as its top ontology's framwork, OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) that have a liner primary sequence sturcture. It is either a proper part of an chromosome or a RNA molecule or an artificial genetic interval.\"\n\nThe 'genetic sequence' is also formalized in OGI, the differences between 'genetic sequence' and 'genetic interval' is that, 'genetic squence' refers to a liner sequence with only primary structure, whereas 'genetic interval' refers to the 3D sequence in reality, which has not only 3D structure, but also need to have the 'genetic sequence' as its primary structure'. From this aspect we make a distinction between a modelled sequence and a real sequence object as realm.",
     "homepage": "https://code.google.com/p/ontology-for-genetic-interval/",
     "name": "Ontology for Genetic Interval",
     "prefix": "556"
@@ -21440,7 +21439,7 @@
   "559": {
     "description": "The Dengue ontology (IDODEN) is an extension of the Infectious Disease Ontology (IDO) for dengue fever.",
     "homepage": "http://code.google.com/p/dengue-fever-ontology/",
-    "name": "Dengue Ontology",
+    "name": "Dengue Fever Ontology",
     "prefix": "559"
   },
   "56": {

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/external/bioportal/agroportal.json

@@ -2362,7 +2362,7 @@
     },
     "description": "This RDF file contains an extension of the SKOS model to model the development stages (or phenological stages) of cultivated plants. This model defines classes representing the main stages and the secondary stages (2 and 3 digits). The general BBCH scale is represented as an instance of skos:ConceptScheme. A new scale was created, intitled, BBCH global scale, that gather all the stages existing in all BBCH scales. It was built during the ANR D2KAB project., that gather all the stages existing in all BBCh cales. It was built during the ANR D2KAB project. Contact Catherine Roussey (catherine.roussey@inrae.fr) for any modification in this file. This extension of SKOS model was build using 4 versions of BBCH monograph: * Growth stages of mono- and dicotyledonous plants BBCH Monograph edited by Uwe Meier Julius Kühn-Institut (JKI) Quedlinburg 2018 DOI: 10.5073/20180906-074619 ISBN: 978-3-95547-071-5 * Stades phénologiques des mono-et dicotylédones cultivées BBCH Monographie rédigé par Uwe Meier Instituto Julius Kühn (JKI, siglas en alomán) Quedlinburg, 2018 DOI: 10.5073/20180906-075455 ISBN: 978-3-95547-072-2 * Estadios de las plantas mono-y dicotyledóneas BBCH Monografia Elaborado por Uwe Meier Instituto Julius Kühn (JKI, 2018 DOI: 10.5073/20180906-075743 ISBN: 978-3-95547-069-2 * Entwicklungsstadien mono- und dikotyler Pflanzen BBCH Monografie bearbeitet von Uwe Meier Julius Kühn-Institut (JKI) Quedlinburg 2018 DOI: 10.5073/20180906-075119 ISBN: 978-3-95547-070-8 All versions are licensed under a Creative Commons Attribution 4.0 International License., Ce fichier RDF contient une extension du modèle SKOS pour modeliser les stades de développement (ou stades phénologiques) des plantes cultivées. Ce modèle défini des classes représentant les stades principaux et les stades secondaires (à 2 et 3 chiffres). l'échelle BBCH générale est représentée sous forme d'une instance de skos:ConceptScheme. Une nouvelle échelle a été créée, appelée échelle BBCH globale, regroupant tous les stades existant dans toutes les échelles BBCH. L'ontologie a été construite pendant le projet ANR D2KAB. Contacter Catherine Roussey (catherine.roussey@inrae.fr) pour toute modification dans ce fichier. Ce modele skos a été construit en utilisant 4 versions de la monographie BBCH toutes sous licence Creative Commons Attribution 4.0 International: * Growth stages of mono- and dicotyledonous plants BBCH Monograph edited by Uwe Meier Julius Kühn-Institut (JKI) Quedlinburg 2018 DOI: 10.5073/20180906-074619 ISBN: 978-3-95547-071-5 * Stades phénologiques des mono-et dicotylédones cultivées BBCH Monographie rédigé par Uwe Meier Instituto Julius Kühn (JKI, 2018 DOI: 10.5073/20180906-075743 ISBN: 978-3-95547-069-2 * Entwicklungsstadien mono- und dikotyler Pflanzen BBCH Monografie bearbeitet von Uwe Meier Julius Kühn-Institut (JKI) Quedlinburg 2018 DOI: 10.5073/20180906-075119 ISBN: 978-3-95547-070-8, that gather all the stages existing in all BBCh cales. It was built during the ANR D2KAB project. Contact Catherine Roussey (catherine.roussey@inrae.fr) for any modification in this file. This extension of SKOS model was build using 4 versions of BBCH monograph. All versions are licensed under a Creative Commons Attribution 4.0 International License., regroupant tous les stades existant dans toutes les échelles BBCH. L'ontologie a été construite pendant le projet ANR D2KAB. Contacter Catherine Roussey (catherine.roussey@inrae.fr) pour toute modification dans ce fichier. Ce modele skos a été construit en utilisant 4 versions de la monographie BBCH toutes sous licence Creative Commons Attribution 4.0 International., regroupant tous les stades existant dans toutes les échelles BBCH. L'ontologie a été construite pendant le projet ANR D2KAB. Contacter Catherine Roussey (catherine.roussey@inrae.fr) pour toute modification dans ce fichier. Ce modele skos a été construit en utilisant 4 versions de la monographie BBCH toutes sous licence Creative Commons Attribution 4.0 International., that gather all the stages existing in all BBCh cales. It was built during the ANR D2KAB project. Contact Catherine Roussey (catherine.roussey@inrae.fr) for any modification in this file. This extension of SKOS model was build using 4 versions of BBCH monograph. All versions are licensed under a Creative Commons Attribution 4.0 International License.",
     "example_uri": "http://ontology.inrae.fr/ppdo/ontology/SecondaryStage03",
-    "homepage": "http://ontology.irstea.fr/pmwiki.php/Site/Ppdo",
+    "homepage": "https://forge.inrae.fr/bsv/phenologicalstages",
     "license": "CC-BY-4.0",
     "name": "BBCH-based Plant Phenological Description Ontology",
     "prefix": "PPDO",
@@ -2904,7 +2904,7 @@
       "https://planteome.org/references"
     ],
     "repository": "https://github.com/Planteome/plant-trait-ontology",
-    "version": "May 2025"
+    "version": "November 2025"
   },
   "TOP": {
     "contact": {

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/external/fairsharing/processed.json

@@ -527,7 +527,7 @@
     "domains": [
       "centrally registered identifier"
     ],
-    "homepage": "https://www.linked.data.gov.au/guidelines",
+    "homepage": "https://github.com/AGLDWG/guidelines/blob/master/PID-IRI-Guidelines-v2.2.md",
     "license": "CC-BY-4.0",
     "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbjRCIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--fd84076f93aaaa03e5a3c40990a62269ee0dfb3f/agldwg-logo-ochre-150.png?disposition=inline",
     "name": "Australian Government Link Data Working Group Persistent Identification Namespace",
@@ -1198,7 +1198,7 @@
   },
   "FAIRsharing.2d1735": {
     "abbreviation": "GRID Identifier",
-    "description": "Identifier schema for GRID",
+    "description": "Identifier schema for GRID. GRID published its final public released on 16 Sep 2021: https://doi.org/10.6084/m9.figshare.16685428. The final GRID release contains ROR IDs for every GRID record in that release, so that users can easily map from GRID to ROR. A corresponding ROR dataset was released on 23 Sep 2021: https://doi.org/10.5281/zenodo.5534443. This ROR release contains all new/updated records from the final GRID release. Additionally, a simplified CSV file with the ROR ID, name, country and GRID ID from each record is available at https://doi.org/10.5281/zenodo.5534785.",
     "domains": [
       "centrally registered identifier"
     ],
@@ -3259,12 +3259,12 @@
   },
   "FAIRsharing.58b6f9": {
     "abbreviation": "RInChI",
-    "description": "The aim of the RInChI project, in the same vein as InChI, is to create a unique data string to describe a reaction. Reaction InChIs, or RInChIs, are such data strings.",
+    "description": "The aim of the RInChI project, in the same vein as InChI, is to create a unique data string to describe a reaction. Reaction InChIs, or RInChIs, are such data strings. The RInChI format is a hierarchical, layered description of a reaction with different levels based on the Standard InChI representation of each structural component participating in the reaction.",
     "domains": [
       "Reaction data",
       "centrally registered identifier"
     ],
-    "homepage": "http://www-rinchi.ch.cam.ac.uk/",
+    "homepage": "https://github.com/IUPAC-InChI/RInChI",
     "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBcUlFIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--e03d046e3a37448b0cd9e13b86fa57a003ff3190/inchi-wheel.png?disposition=inline",
     "name": "Reaction InChI",
     "publications": [
@@ -7258,7 +7258,7 @@
   "FAIRsharing.a3d34f": {
     "abbreviation": "CETAF Stable Identifier",
     "description": "The Stable Identifiers of the Consortium of European Taxonomic Facilities (CETAF) are globally unique, consistent and reliable identifiers for specimens in natural and botanical collections. These identifiers are used in the world wide web to redirect users and systems to images, websites and metadata of the physical objects and to integrate them with the semantic web. The CETAF identifier system is based on HTTP-URIs and Linked Data principles. It is simple and future-proof. Each collection object as well as its associated information resources (e.g. multimedia, RDF, webpages) are identified by stable HTTP-URIs that will never change. The URI Syntax for the objects is chosen and maintained by the institution owning them. This flexibility is one of the main advantages of the CETAF Stable Identifier system as it allows e.g. to include branding and local scope identifiers into the CETAF Stable Identifier URI.",
-    "homepage": "https://cetafidentifiers.biowikifarm.net/wiki/Main_Page",
+    "homepage": "https://istc.cetaf.org/CETAF_Stable_Identifier_Guide",
     "license": "CC BY-SA 4.0",
     "name": "Consortium of European Taxonomic Facilities Stable Identifier",
     "publications": [
@@ -11392,7 +11392,7 @@
       "Data retrieval",
       "centrally registered identifier"
     ],
-    "homepage": "https://ror.readme.io/docs/ror-identifier-pattern",
+    "homepage": "https://ror.readme.io/docs/identifier",
     "license": "CC0-1.0",
     "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBZ3NDIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--5c0df1fa712279f60346a8a58f10ba3f5b33674c/download.png?disposition=inline",
     "name": "Research Organization Registry ID Schema",
@@ -11644,12 +11644,15 @@
     ]
   },
   "FAIRsharing.fd6003": {
-    "description": "UniProt protein identifiers are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'. UniProtKB accession numbers consist of 6 or 10 alphanumeric characters in the format.",
+    "abbreviation": "UniProt AC",
+    "description": "UniProt Accession numbers are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'. UniProtKB accession numbers consist of 6 or 10 alphanumeric characters in the format listed in this record's regex field.",
     "domains": [
-      "proteome"
+      "Sequence annotation",
+      "proteome",
+      "protein"
     ],
     "homepage": "https://www.uniprot.org/help/accession_numbers",
-    "name": "UniProt Protein Identifier",
+    "name": "UniProt Accession Number",
     "subjects": [
       "Proteogenomics",
       "Proteomics",

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/external/lov/processed.json

@@ -9266,6 +9266,18 @@
     ],
     "homepage": "https://w3id.org/rains"
   },
+  "rdfc": {
+    "name": "RDF Connect Ontology",
+    "prefix": "rdfc",
+    "uri_prefix": "https://w3id.org/rdf-connect#$1",
+    "description": "An ontology for describing programming language-specific runners, processors and pipelines in RDF-based data processing frameworks.",
+    "modified": "2025-09-02",
+    "keywords": [
+      "Catalogs",
+      "Services"
+    ],
+    "homepage": "https://w3id.org/rdf-connect/ontology"
+  },
   "rdfp": {
     "name": "The RDF Presentation ontology",
     "prefix": "rdfp",

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/external/ols/processed.json

@@ -25,9 +25,7 @@
     "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
     "name": "Anatomical Entity Ontology",
     "prefix": "aeo",
-    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
-    "version": "2014-12-05",
-    "version.iri": "http://purl.obolibrary.org/obo/aeo/releases/2014-12-05/aeo.owl"
+    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
   },
   "afo": {
     "description": "Allotrope Merged Ontology Suite",
@@ -634,9 +632,7 @@
     "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology",
     "name": "Human developmental anatomy, abstract",
     "prefix": "ehdaa2",
-    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
-    "version": "2013-07-04",
-    "version.iri": "http://purl.obolibrary.org/obo/ehdaa2/releases/2013-07-04/ehdaa2.owl"
+    "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
   },
   "emap": {
     "description": "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).",
@@ -785,9 +781,7 @@
     "download_owl": "http://purl.obolibrary.org/obo/fix.owl",
     "homepage": "http://www.ebi.ac.uk/chebi",
     "name": "Physico-chemical methods and properties",
-    "prefix": "fix",
-    "version": "2020-04-13",
-    "version.iri": "http://purl.obolibrary.org/obo/fix/releases/2020-04-13/fix.owl"
+    "prefix": "fix"
   },
   "flopo": {
     "description": "Traits and phenotypes of flowering plants occurring in digitized Floras",
@@ -803,9 +797,7 @@
     "homepage": "http://si.washington.edu/projects/fma",
     "name": "Foundational Model of Anatomy Ontology (subset)",
     "prefix": "fma",
-    "tracker": "https://bitbucket.org/uwsig/fma/issues",
-    "version": "2020-04-13",
-    "version.iri": "http://purl.obolibrary.org/obo/fma/releases/2020-04-13/fma.owl"
+    "tracker": "https://bitbucket.org/uwsig/fma/issues"
   },
   "fobi": {
     "description": "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data",
@@ -1018,9 +1010,7 @@
     "homepage": "https://github.com/BgeeDB/homology-ontology",
     "name": "Homology Ontology",
     "prefix": "hom",
-    "tracker": "https://github.com/BgeeDB/homology-ontology/issues",
-    "version": "2015-01-07",
-    "version.iri": "http://purl.obolibrary.org/obo/hom/releases/2015-01-07/hom.owl"
+    "tracker": "https://github.com/BgeeDB/homology-ontology/issues"
   },
   "hp": {
     "description": "The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities and clinical features encountered in human disease.",
@@ -1179,9 +1169,7 @@
     "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
     "name": "Mouse adult gross anatomy",
     "prefix": "ma",
-    "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
-    "version": "2017-02-07",
-    "version.iri": "http://purl.obolibrary.org/obo/ma/releases/2017-02-07/ma.owl"
+    "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues"
   },
   "mamo": {
     "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
@@ -1414,8 +1402,8 @@
     "name": "Mass spectrometry ontology",
     "prefix": "ms",
     "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-    "version": "4.1.214",
-    "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.214/ms.owl"
+    "version": "4.1.215",
+    "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.215/ms.owl"
   },
   "msio": {
     "description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
@@ -2033,9 +2021,7 @@
     "description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.",
     "download_owl": "http://purl.obolibrary.org/obo/rex.owl",
     "name": "Physico-chemical process",
-    "prefix": "rex",
-    "version": "2017-11-19",
-    "version.iri": "http://purl.obolibrary.org/obo/rex/releases/2017-11-19/rex.owl"
+    "prefix": "rex"
   },
   "rexo": {
     "contact": "vladimir.n.mironov@gmail.com",
@@ -2425,8 +2411,8 @@
     "name": "The Vertebrate Trait Ontology",
     "prefix": "vt",
     "tracker": "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues",
-    "version": "2025-11-11",
-    "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-11-11/vt.owl"
+    "version": "2025-11-18",
+    "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-11-18/vt.owl"
   },
   "vto": {
     "description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.",
@@ -2545,9 +2531,7 @@
     "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
     "name": "Zebrafish developmental stages ontology",
     "prefix": "zfs",
-    "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues",
-    "version": "2020-03-10",
-    "version.iri": "http://purl.obolibrary.org/obo/zfs/releases/2020-03-10/zfs.owl"
+    "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues"
   },
   "zp": {
     "description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.",

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/external/re3data/processed.json

@@ -1839,7 +1839,7 @@
   "r3d100010189": {
     "description": "The BGS is a data-rich organisation with over 400 datasets in its care; including environmental monitoring data, digital databases, physical collections (borehole core, rocks, minerals and fossils), records and archives. Our data is managed by the National Geoscience Data Centre.",
     "doi": "10.17616/R36W2C",
-    "homepage": "https://www.bgs.ac.uk/geological-data/national-geoscience-data-centre/",
+    "homepage": "https://www.bgs.ac.uk/ngdc/",
     "name": "National Geoscience Data Centre",
     "prefix": "r3d100010189",
     "synonyms": [

{bioregistry-0.13.7 → bioregistry-0.13.8}/src/bioregistry/version.py

@@ -11,7 +11,7 @@ __all__ = [
     "get_version",
 ]
 
-VERSION = "0.13.7"
+VERSION = "0.13.8"
 
 
 def get_git_hash() -> str | None: