bioregistry 0.13.15__tar.gz → 0.13.17__tar.gz

{bioregistry-0.13.15 → bioregistry-0.13.17}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.15
+Version: 0.13.17
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt

{bioregistry-0.13.15 → bioregistry-0.13.17}/pyproject.toml

@@ -10,7 +10,7 @@ markers = [
 
 [project]
 name = "bioregistry"
-version = "0.13.15"
+version = "0.13.17"
 description = "Integrated registry of biological databases and nomenclatures"
 readme = "README.md"
 authors = [
@@ -254,7 +254,7 @@ known-first-party = [
 docstring-code-format = true
 
 [tool.bumpversion]
-current_version = "0.13.15"
+current_version = "0.13.17"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
 serialize = [
     "{major}.{minor}.{patch}-{release}+{build}",

{bioregistry-0.13.15 → bioregistry-0.13.17}/src/bioregistry/app/impl.py

@@ -68,7 +68,7 @@ BIOREGISTRY_FOOTER_DEFAULT = dedent(f"""\
 
     <p class="small text-center text-muted">
     Developed with ❤️ by the
-    <a href="https://www.iac.rwth-aachen.de">Institute for Inorganic Chemistry</a> at RWTH Aachen University
+    <a href="https://www.iac.rwth-aachen.de">Institute of Inorganic Chemistry</a> at RWTH Aachen University
     </br> and the
     <a href="https://gyorilab.github.io">Gyori Lab for Computational Biomedicine</a>
     at Northeastern University.<br/>

{bioregistry-0.13.15 → bioregistry-0.13.17}/src/bioregistry/curation/bulk_import.py

@@ -19,7 +19,6 @@ from __future__ import annotations
 
 import sys
 from collections import defaultdict
-from collections.abc import Mapping
 from typing import Any
 
 import click
@@ -32,7 +31,7 @@ from bioregistry.utils import norm
 NESTED = {"contact", "contributor"}
 
 
-def _resource_from_row(row: Mapping[str, Any]) -> Resource:
+def _resource_from_row(row: dict[str, Any]) -> Resource:
     kwargs = {}
     nested: defaultdict[str, dict[str, str]] = defaultdict(dict)
     for key, value in row.items():
@@ -60,7 +59,7 @@ def _resource_from_row(row: Mapping[str, Any]) -> Resource:
 
 def _bulk_import_df(df: pd.DataFrame) -> None:
     for _, row in df.iterrows():
-        resource = _resource_from_row(row.to_dict())
+        resource = _resource_from_row(row.to_dict())  # type:ignore[arg-type]
         try:
             add_resource(resource)
         except KeyError as e: