bioregistry 0.13.13__tar.gz → 0.13.15__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (229) hide show
  1. {bioregistry-0.13.13 → bioregistry-0.13.15}/PKG-INFO +1 -1
  2. {bioregistry-0.13.13 → bioregistry-0.13.15}/pyproject.toml +2 -2
  3. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/bioregistry.json +68 -65
  4. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/collections.json +26 -5
  5. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/aberowl/processed.json +81 -67
  6. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bartoc/processed.json +90 -47
  7. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bioportal/agroportal.json +22 -16
  8. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bioportal/ecoportal.json +2 -1
  9. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/fairsharing/processed.json +17 -20
  10. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/lov/processed.json +12 -0
  11. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/ols/processed.json +29 -29
  12. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/re3data/processed.json +68 -3
  13. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/version.py +1 -1
  14. {bioregistry-0.13.13 → bioregistry-0.13.15}/LICENSE +0 -0
  15. {bioregistry-0.13.13 → bioregistry-0.13.15}/README.md +0 -0
  16. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/__init__.py +0 -0
  17. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/__main__.py +0 -0
  18. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/analysis/__init__.py +0 -0
  19. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/analysis/bioregistry_diff.py +0 -0
  20. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/analysis/mapping_checking.py +0 -0
  21. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/analysis/paper_ranking.py +0 -0
  22. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/__init__.py +0 -0
  23. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/api.py +0 -0
  24. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/cli.py +0 -0
  25. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/constants.py +0 -0
  26. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/impl.py +0 -0
  27. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/proxies.py +0 -0
  28. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/czi.svg +0 -0
  29. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/dalia.png +0 -0
  30. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/dfg.svg +0 -0
  31. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/funding-manifest-urls.txt +0 -0
  32. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/logo.svg +0 -0
  33. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/nfdi4chem.svg +0 -0
  34. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/northeastern.svg +0 -0
  35. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/static/rwth-iac.svg +0 -0
  36. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/base.html +0 -0
  37. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/collection.html +0 -0
  38. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/collections.html +0 -0
  39. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/context.html +0 -0
  40. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/contexts.html +0 -0
  41. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/contributor.html +0 -0
  42. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/contributors.html +0 -0
  43. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/highlights/owners.html +0 -0
  44. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/highlights/relations.html +0 -0
  45. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/highlights/twitter.html +0 -0
  46. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/home.html +0 -0
  47. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/keyword.html +0 -0
  48. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/keywords.html +0 -0
  49. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/macros.html +0 -0
  50. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/meta/access.html +0 -0
  51. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/meta/acknowledgements.html +0 -0
  52. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/meta/download.html +0 -0
  53. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/meta/related.html +0 -0
  54. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/meta/schema.html +0 -0
  55. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/meta/summary.html +0 -0
  56. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/meta/sustainability.html +0 -0
  57. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/metaresource.html +0 -0
  58. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/metaresources.html +0 -0
  59. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/prose.html +0 -0
  60. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/reference.html +0 -0
  61. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html +0 -0
  62. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resolve_errors/invalid_identifier.html +0 -0
  63. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resolve_errors/missing_prefix.html +0 -0
  64. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resolve_errors/missing_providers.html +0 -0
  65. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resource-bibliometrics.html +0 -0
  66. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resource-standards.html +0 -0
  67. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resource.html +0 -0
  68. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/templates/resources.html +0 -0
  69. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/test.py +0 -0
  70. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/ui.py +0 -0
  71. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/utils.py +0 -0
  72. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/app/wsgi.py +0 -0
  73. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/benchmarks/__init__.py +0 -0
  74. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/benchmarks/__main__.py +0 -0
  75. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/benchmarks/cli.py +0 -0
  76. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/benchmarks/curie_parsing.py +0 -0
  77. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/benchmarks/curie_validation.py +0 -0
  78. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/benchmarks/uri_parsing.py +0 -0
  79. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/bibliometrics.py +0 -0
  80. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/cli.py +0 -0
  81. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/collection_api.py +0 -0
  82. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/compare.py +0 -0
  83. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/constants.py +0 -0
  84. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/__init__.py +0 -0
  85. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_cessda.py +0 -0
  86. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_co_providers.py +0 -0
  87. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_descriptions_from_gs.py +0 -0
  88. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_examples.py +0 -0
  89. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_examples_from_ols.py +0 -0
  90. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_linkml.py +0 -0
  91. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_nfdi_section_collections.py +0 -0
  92. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_ontology_regexes.py +0 -0
  93. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_provider_status_curations.py +0 -0
  94. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_sweet.py +0 -0
  95. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/add_wikidata_database.py +0 -0
  96. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/bulk_import.py +0 -0
  97. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/clean_licenses.py +0 -0
  98. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/clean_name_suffixes.py +0 -0
  99. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/clean_publications.py +0 -0
  100. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/cleanup_authors.py +0 -0
  101. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/deprecation_diff.py +0 -0
  102. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/enrich_publications.py +0 -0
  103. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/find_contact_groups.py +0 -0
  104. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/fix_obo_purls.py +0 -0
  105. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/import_pc_semiautomatic.py +0 -0
  106. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/ingest_prefixmaps_bioportal.py +0 -0
  107. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/literature.py +0 -0
  108. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/make_description_curation_sheet.py +0 -0
  109. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/make_health_report_curation_sheet.py +0 -0
  110. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/map_bartoc_via_wikidata.py +0 -0
  111. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/map_re3data_via_fairsharing.py +0 -0
  112. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/nfdi_collections.py +0 -0
  113. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/odk_usage.py +0 -0
  114. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/rename_metaprefix.py +0 -0
  115. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/review_pc.py +0 -0
  116. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/seed_collection.py +0 -0
  117. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/suggest_author_curation.py +0 -0
  118. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/curation/suggest_uniprot_providers.py +0 -0
  119. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/README.md +0 -0
  120. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/__init__.py +0 -0
  121. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/contexts.json +0 -0
  122. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/curated_mappings.sssom.tsv +0 -0
  123. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/curated_papers.tsv +0 -0
  124. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/data/metaregistry.json +0 -0
  125. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/__init__.py +0 -0
  126. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/__main__.py +0 -0
  127. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/cli.py +0 -0
  128. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/prefix_maps.py +0 -0
  129. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/prefixcc.py +0 -0
  130. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/rdf_export.py +0 -0
  131. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/schema_export.py +0 -0
  132. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/sssom_export.py +0 -0
  133. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/tables_export.py +0 -0
  134. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/tsv_export.py +0 -0
  135. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/warnings_export.py +0 -0
  136. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/export/yaml_export.py +0 -0
  137. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/__init__.py +0 -0
  138. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/aberowl/__init__.py +0 -0
  139. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/align.py +0 -0
  140. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/alignment_utils.py +0 -0
  141. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bartoc/__init__.py +0 -0
  142. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/biocontext/__init__.py +0 -0
  143. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/biocontext/processed.json +0 -0
  144. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/biolink/__init__.py +0 -0
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  147. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bioportal/__init__.py +0 -0
  148. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bioportal/agroportal.py +0 -0
  149. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bioportal/bioportal.json +0 -0
  150. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bioportal/bioportal.py +0 -0
  151. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/bioportal/ecoportal.py +0 -0
  152. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/cellosaurus/__init__.py +0 -0
  153. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/cellosaurus/processed.json +0 -0
  154. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/cheminf/__init__.py +0 -0
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  156. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/cropoct/__init__.py +0 -0
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  158. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/edam/__init__.py +0 -0
  159. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/edam/processed.json +0 -0
  160. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/fairsharing/__init__.py +0 -0
  161. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/go/__init__.py +0 -0
  162. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/go/processed.json +0 -0
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  164. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/hl7/OID_Report.csv +0 -0
  165. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/hl7/__init__.py +0 -0
  166. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/integbio/__init__.py +0 -0
  167. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/integbio/processed.json +0 -0
  168. {bioregistry-0.13.13 → bioregistry-0.13.15}/src/bioregistry/external/lov/__init__.py +0 -0
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@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: bioregistry
3
- Version: 0.13.13
3
+ Version: 0.13.15
4
4
  Summary: Integrated registry of biological databases and nomenclatures
5
5
  Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
6
6
  Author: Charles Tapley Hoyt
@@ -10,7 +10,7 @@ markers = [
10
10
 
11
11
  [project]
12
12
  name = "bioregistry"
13
- version = "0.13.13"
13
+ version = "0.13.15"
14
14
  description = "Integrated registry of biological databases and nomenclatures"
15
15
  readme = "README.md"
16
16
  authors = [
@@ -254,7 +254,7 @@ known-first-party = [
254
254
  docstring-code-format = true
255
255
 
256
256
  [tool.bumpversion]
257
- current_version = "0.13.13"
257
+ current_version = "0.13.15"
258
258
  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
259
259
  serialize = [
260
260
  "{major}.{minor}.{patch}-{release}+{build}",
@@ -1797,10 +1797,11 @@
1797
1797
  "afo": {
1798
1798
  "aberowl": {
1799
1799
  "description": "<p><strong>Allotrope Merged Ontology Suite</strong></p> <p>The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.</p> <p>license: http://purl.allotrope.org/voc/creative-commons-attribution-license<br/> rights: http://purl.allotrope.org/voc/copyright<br/></p>",
1800
- "download_owl": "http://aber-owl.net/media/ontologies/AFO/42/afo.owl",
1800
+ "download_owl": "http://aber-owl.net/media/ontologies/AFO/43/afo.owl",
1801
+ "homepage": "http://purl.allotrope.org",
1801
1802
  "name": "Allotrope Merged Ontology Suite",
1802
1803
  "prefix": "AFO",
1803
- "version": "REC/2025/06"
1804
+ "version": "REC/2025/12"
1804
1805
  },
1805
1806
  "bioportal": {
1806
1807
  "contact": {
@@ -1851,8 +1852,8 @@
1851
1852
  "name": "Allotrope Merged Ontology Suite",
1852
1853
  "prefix": "afo",
1853
1854
  "uri_format": "http://purl.allotrope.org/ontologies$1",
1854
- "version": "2025-06-01",
1855
- "version.iri": "http://purl.allotrope.org/voc/afo/merged/REC/2025/06/merged-without-qudt-and-inferred"
1855
+ "version": "2025-12-01",
1856
+ "version.iri": "http://purl.allotrope.org/voc/afo/merged/REC/2025/12/merged-without-qudt-and-inferred"
1856
1857
  },
1857
1858
  "ontobee": {
1858
1859
  "library": "Not Specified/No",
@@ -4122,7 +4123,7 @@
4122
4123
  "apo": {
4123
4124
  "aberowl": {
4124
4125
  "description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi",
4125
- "download_owl": "http://aber-owl.net/media/ontologies/APO/64/apo.owl",
4126
+ "download_owl": "http://aber-owl.net/media/ontologies/APO/65/apo.owl",
4126
4127
  "homepage": "http://www.yeastgenome.org/",
4127
4128
  "name": "Ascomycete phenotype ontology",
4128
4129
  "prefix": "APO"
@@ -4228,8 +4229,8 @@
4228
4229
  "name": "Ascomycete Phenotype Ontology (APO)",
4229
4230
  "prefix": "apo",
4230
4231
  "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues",
4231
- "version": "2025-11-10",
4232
- "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-11-10/apo.owl"
4232
+ "version": "2025-12-19",
4233
+ "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-12-19/apo.owl"
4233
4234
  },
4234
4235
  "ontobee": {
4235
4236
  "library": "Library",
@@ -7989,11 +7990,11 @@
7989
7990
  },
7990
7991
  "bervo": {
7991
7992
  "aberowl": {
7992
- "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None",
7993
- "download_owl": "http://aber-owl.net/media/ontologies/BERVO/4/bervo.owl",
7993
+ "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None, \"An ontology of variables for earth system simulation, partially derived from the EcoSIM framework.\"",
7994
+ "download_owl": "http://aber-owl.net/media/ontologies/BERVO/5/bervo.owl",
7994
7995
  "name": "The Biological and Environmental Research Variable Ontology",
7995
7996
  "prefix": "BERVO",
7996
- "version": "2025-11-07"
7997
+ "version": "2025-12-22"
7997
7998
  },
7998
7999
  "bioportal": {
7999
8000
  "contact": {
@@ -19758,7 +19759,7 @@
19758
19759
  "cl": {
19759
19760
  "aberowl": {
19760
19761
  "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
19761
- "download_owl": "http://aber-owl.net/media/ontologies/CL/117/cl.owl",
19762
+ "download_owl": "http://aber-owl.net/media/ontologies/CL/118/cl.owl",
19762
19763
  "homepage": "https://obophenotype.github.io/cell-ontology/",
19763
19764
  "name": "Cell Ontology",
19764
19765
  "prefix": "CL"
@@ -19775,7 +19776,7 @@
19775
19776
  "name": "Cell Ontology",
19776
19777
  "prefix": "CL",
19777
19778
  "repository": "https://github.com/obophenotype/cell-ontology",
19778
- "version": "2025-11-25"
19779
+ "version": "2025-12-17"
19779
19780
  },
19780
19781
  "biocontext": {
19781
19782
  "prefix": "CL"
@@ -19817,14 +19818,15 @@
19817
19818
  "name": "Alexander Diehl",
19818
19819
  "orcid": "0000-0001-9990-8331"
19819
19820
  },
19820
- "description": "The Cell Ontology (CL) is a candidate OBO Foundry ontology for the representation of cell types. First described in 2005, the CL integrates cell types from the prokaryotic, fungal, and eukaryotic organisms. As a core component of the OBO Foundry, the CL merges information contained in species-specific anatomical ontologies as well as referencing other OBO Foundry ontologies such as the Protein Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for the biological processes a cell type participates in. The CL is under continuous revision to expand representation of cell types and to better integrate with other biomedical ontologies.",
19821
+ "description": "Cell Ontology (CL) is an ontology designed to classify and describe cell types across different organisms. It serves as a resource for model organism and bioinformatics databases. The ontology covers a broad range of cell types in animal cells, with over 2700 cell type classes, and provides high-level cell type classes as mapping points for cell type classes in ontologies representing other species, such as the Plant Ontology or Drosophila Anatomy Ontology. Integration with other ontologies such as Uberon, GO, CHEBI, PR, and PATO enables linking cell types to anatomical structures, biological processes, and other relevant concepts.\n\nThe Cell Ontology was created in 2004 and has been a core OBO Foundry ontology since the start of the Foundry.",
19821
19822
  "domains": [
19822
19823
  "Annotation",
19823
19824
  "cell",
19824
19825
  "morphology"
19825
19826
  ],
19826
19827
  "homepage": "https://github.com/obophenotype/cell-ontology",
19827
- "license": "CC-BY-3.0",
19828
+ "license": "CC-BY-4.0",
19829
+ "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbm9IIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--d544c9b28a1342673bbc8f0346aeee1c9220104e/107354015-9375bb00-6ac5-11eb-9394-7318df343ec2.png?disposition=inline",
19828
19830
  "name": "Cell Ontology",
19829
19831
  "prefix": "FAIRsharing.j9y503",
19830
19832
  "publications": [
@@ -19948,8 +19950,8 @@
19948
19950
  "name": "Cell Ontology",
19949
19951
  "prefix": "cl",
19950
19952
  "tracker": "https://github.com/obophenotype/cell-ontology/issues",
19951
- "version": "2025-11-25",
19952
- "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-11-25/cl.owl"
19953
+ "version": "2025-12-17",
19954
+ "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-12-17/cl.owl"
19953
19955
  },
19954
19956
  "ontobee": {
19955
19957
  "library": "Library",
@@ -21022,7 +21024,7 @@
21022
21024
  "cmo": {
21023
21025
  "aberowl": {
21024
21026
  "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
21025
- "download_owl": "http://aber-owl.net/media/ontologies/CMO/166/cmo.owl",
21027
+ "download_owl": "http://aber-owl.net/media/ontologies/CMO/167/cmo.owl",
21026
21028
  "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
21027
21029
  "name": "Clinical measurement ontology",
21028
21030
  "prefix": "CMO"
@@ -23572,7 +23574,7 @@
23572
23574
  "cob": {
23573
23575
  "aberowl": {
23574
23576
  "description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.",
23575
- "download_owl": "http://aber-owl.net/media/ontologies/COB/15/cob.owl",
23577
+ "download_owl": "http://aber-owl.net/media/ontologies/COB/16/cob.owl",
23576
23578
  "homepage": "https://obofoundry.org/COB/",
23577
23579
  "name": "Core Ontology for Biology and Biomedicine",
23578
23580
  "prefix": "COB"
@@ -23624,8 +23626,8 @@
23624
23626
  "name": "Core Ontology for Biology and Biomedicine",
23625
23627
  "prefix": "cob",
23626
23628
  "tracker": "https://github.com/OBOFoundry/COB/issues",
23627
- "version": "2025-06-30",
23628
- "version.iri": "http://purl.obolibrary.org/obo/cob/releases/2025-06-30/cob.owl"
23629
+ "version": "2025-12-12",
23630
+ "version.iri": "http://purl.obolibrary.org/obo/cob/releases/2025-12-12/cob.owl"
23629
23631
  },
23630
23632
  "ontobee": {
23631
23633
  "library": "Library",
@@ -34675,7 +34677,7 @@
34675
34677
  "dron": {
34676
34678
  "aberowl": {
34677
34679
  "description": "An ontology to support comparative effectiveness researchers studying claims data.",
34678
- "download_owl": "http://aber-owl.net/media/ontologies/DRON/33/dron.owl",
34680
+ "download_owl": "http://aber-owl.net/media/ontologies/DRON/34/dron.owl",
34679
34681
  "homepage": "https://github.com/ufbmi/dron",
34680
34682
  "name": "The Drug Ontology",
34681
34683
  "prefix": "DRON"
@@ -34782,8 +34784,8 @@
34782
34784
  "name": "The Drug Ontology",
34783
34785
  "prefix": "dron",
34784
34786
  "tracker": "https://github.com/ufbmi/dron/issues",
34785
- "version": "2025-11-20",
34786
- "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-11-20/dron.owl"
34787
+ "version": "2025-12-19",
34788
+ "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-12-19/dron.owl"
34787
34789
  },
34788
34790
  "ontobee": {
34789
34791
  "library": "Library",
@@ -38505,14 +38507,14 @@
38505
38507
  "email": "efo-users@lists.sourceforge.net",
38506
38508
  "name": "EFO User List"
38507
38509
  },
38508
- "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested.",
38510
+ "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested., and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
38509
38511
  "example_uri": "http://www.orpha.net/ORDO/Orphanet_1390",
38510
38512
  "homepage": "http://www.ebi.ac.uk/efo/",
38511
38513
  "license": "Apache 2.0 License",
38512
38514
  "name": "Experimental Factor Ontology",
38513
38515
  "prefix": "EFO",
38514
38516
  "repository": "https://github.com/EBISPOT/efo",
38515
- "version": "3.84.0"
38517
+ "version": "3.85.0"
38516
38518
  },
38517
38519
  "biocontext": {
38518
38520
  "prefix": "EFO"
@@ -38637,14 +38639,14 @@
38637
38639
  },
38638
38640
  "ols": {
38639
38641
  "contact": "efo-users@lists.sourceforge.net",
38640
- "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for OpenTargets.org",
38642
+ "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
38641
38643
  "download_owl": "http://www.ebi.ac.uk/efo/efo.owl",
38642
38644
  "homepage": "http://www.ebi.ac.uk/efo",
38643
38645
  "name": "Experimental Factor Ontology",
38644
38646
  "prefix": "efo",
38645
38647
  "uri_format": "http://www.ebi.ac.uk/efo/EFO_$1",
38646
- "version": "3.84.0",
38647
- "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.84.0/efo.owl"
38648
+ "version": "3.85.0",
38649
+ "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.85.0/efo.owl"
38648
38650
  },
38649
38651
  "ontobee": {
38650
38652
  "library": "Not Specified/No",
@@ -44562,12 +44564,11 @@
44562
44564
  },
44563
44565
  "exmo": {
44564
44566
  "aberowl": {
44565
- "description": "A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
44566
- "download_owl": "http://aber-owl.net/media/ontologies/EXMO/6/exmo.owl",
44567
+ "description": "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
44568
+ "download_owl": "http://aber-owl.net/media/ontologies/EXMO/7/exmo.owl",
44567
44569
  "homepage": "https://github.com/Exercise-Medicine-Ontology/EXMO",
44568
44570
  "name": "Exercise Medicine Ontology",
44569
- "prefix": "EXMO",
44570
- "version": "2025-06-05"
44571
+ "prefix": "EXMO"
44571
44572
  },
44572
44573
  "bioportal": {
44573
44574
  "contact": {
@@ -49348,12 +49349,12 @@
49348
49349
  "name": "Valerie Wood",
49349
49350
  "orcid": "0000-0001-6330-7526"
49350
49351
  },
49351
- "description": "FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource (www.pombase.org). Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.",
49352
+ "description": "The Fission Yeast Phenotype Ontology (FYPO) is a formal ontology of phenotypes observed in fission yeast. FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource.",
49352
49353
  "domains": [
49353
49354
  "GO-term enrichment data",
49354
49355
  "phenotype"
49355
49356
  ],
49356
- "homepage": "http://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology",
49357
+ "homepage": "https://github.com/pombase/fypo",
49357
49358
  "license": "CC-BY-4.0",
49358
49359
  "name": "Fission Yeast Phenotype Ontology",
49359
49360
  "prefix": "FAIRsharing.4vr0ys",
@@ -58721,7 +58722,7 @@
58721
58722
  "hgnc": {
58722
58723
  "aberowl": {
58723
58724
  "description": "Human Genome Organisation (HUGO) Gene Nomenclature Committee at the European Bioinformatics Institute approves a gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database.",
58724
- "download_owl": "http://aber-owl.net/media/ontologies/HGNC/6/hgnc.owl",
58725
+ "download_owl": "http://aber-owl.net/media/ontologies/HGNC/7/hgnc.owl",
58725
58726
  "homepage": "http://www.genenames.org/",
58726
58727
  "name": "HUGO Gene Nomenclature",
58727
58728
  "prefix": "HGNC",
@@ -82547,7 +82548,7 @@
82547
82548
  "mmo": {
82548
82549
  "aberowl": {
82549
82550
  "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
82550
- "download_owl": "http://aber-owl.net/media/ontologies/MMO/117/mmo.owl",
82551
+ "download_owl": "http://aber-owl.net/media/ontologies/MMO/119/mmo.owl",
82551
82552
  "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
82552
82553
  "name": "Measurement method ontology",
82553
82554
  "prefix": "MMO"
@@ -82652,8 +82653,8 @@
82652
82653
  "name": "Measurement method ontology",
82653
82654
  "prefix": "mmo",
82654
82655
  "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues",
82655
- "version": "2.167",
82656
- "version.iri": "http://purl.obolibrary.org/obo/mmo/2.167/mmo.owl"
82656
+ "version": "2.168",
82657
+ "version.iri": "http://purl.obolibrary.org/obo/mmo/2.168/mmo.owl"
82657
82658
  },
82658
82659
  "ontobee": {
82659
82660
  "library": "Library",
@@ -84504,7 +84505,7 @@
84504
84505
  "mp": {
84505
84506
  "aberowl": {
84506
84507
  "description": "Standard terms for annotating mammalian phenotypic data.",
84507
- "download_owl": "http://aber-owl.net/media/ontologies/MP/134/mp.owl",
84508
+ "download_owl": "http://aber-owl.net/media/ontologies/MP/135/mp.owl",
84508
84509
  "homepage": "https://www.informatics.jax.org/vocab/mp_ontology/",
84509
84510
  "name": "Mammalian Phenotype Ontology",
84510
84511
  "prefix": "MP"
@@ -84671,8 +84672,8 @@
84671
84672
  "name": "The Mammalian Phenotype Ontology",
84672
84673
  "prefix": "mp",
84673
84674
  "tracker": "https://github.com/mgijax/mammalian-phenotype-ontology/issues",
84674
- "version": "2025-11-19",
84675
- "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-11-19/mp-international.owl"
84675
+ "version": "2025-12-18",
84676
+ "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-12-18/mp-international.owl"
84676
84677
  },
84677
84678
  "ontobee": {
84678
84679
  "library": "Library",
@@ -85164,7 +85165,7 @@
85164
85165
  "ms": {
85165
85166
  "aberowl": {
85166
85167
  "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
85167
- "download_owl": "http://aber-owl.net/media/ontologies/MS/227/ms.owl",
85168
+ "download_owl": "http://aber-owl.net/media/ontologies/MS/228/ms.owl",
85168
85169
  "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
85169
85170
  "name": "Mass spectrometry ontology",
85170
85171
  "prefix": "MS"
@@ -85257,8 +85258,8 @@
85257
85258
  "name": "Mass spectrometry ontology",
85258
85259
  "prefix": "ms",
85259
85260
  "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
85260
- "version": "4.1.221",
85261
- "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.221/ms.owl"
85261
+ "version": "4.1.223",
85262
+ "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.223/ms.owl"
85262
85263
  },
85263
85264
  "ontobee": {
85264
85265
  "library": "Library",
@@ -88120,8 +88121,8 @@
88120
88121
  "prefix": "ncbitaxon",
88121
88122
  "tracker": "https://github.com/obophenotype/ncbitaxon/issues",
88122
88123
  "uri_format": "http://purl.obolibrary.org/obo/NCBITaxon_$1",
88123
- "version": "2025-09-11",
88124
- "version.iri": "http://purl.obolibrary.org/obo/ncbitaxon/2025-09-11/ncbitaxon.owl"
88124
+ "version": "2025-12-03",
88125
+ "version.iri": "http://purl.obolibrary.org/obo/ncbitaxon/2025-12-03/ncbitaxon.owl"
88125
88126
  },
88126
88127
  "ontobee": {
88127
88128
  "library": "Library",
@@ -102316,7 +102317,7 @@
102316
102317
  "peco": {
102317
102318
  "aberowl": {
102318
102319
  "description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.",
102319
- "download_owl": "http://aber-owl.net/media/ontologies/PECO/31/peco.owl",
102320
+ "download_owl": "http://aber-owl.net/media/ontologies/PECO/32/peco.owl",
102320
102321
  "homepage": "http://planteome.org/",
102321
102322
  "name": "Plant Experimental Conditions Ontology",
102322
102323
  "prefix": "PECO"
@@ -102337,7 +102338,7 @@
102337
102338
  "https://doi.org/10.3732/ajb.1200222"
102338
102339
  ],
102339
102340
  "repository": "https://github.com/Planteome/plant-experimental-conditions-ontology",
102340
- "version": "July 2023"
102341
+ "version": "December 2025"
102341
102342
  },
102342
102343
  "biocontext": {
102343
102344
  "prefix": "PECO"
@@ -110082,7 +110083,7 @@
110082
110083
  "pso": {
110083
110084
  "aberowl": {
110084
110085
  "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
110085
- "download_owl": "http://aber-owl.net/media/ontologies/PSO/5/pso.owl",
110086
+ "download_owl": "http://aber-owl.net/media/ontologies/PSO/6/pso.owl",
110086
110087
  "homepage": "https://github.com/Planteome/plant-stress-ontology",
110087
110088
  "name": "Plant Stress Ontology",
110088
110089
  "prefix": "PSO"
@@ -110092,7 +110093,7 @@
110092
110093
  "email": "cooperl@oregonstate.edu",
110093
110094
  "name": "Laurel Cooper"
110094
110095
  },
110095
- "description": "The Plant Stress Ontology (PSO) describes biotic and abiotic stresses that a plant may encounter. An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies.",
110096
+ "description": "The Plant Stress Ontology (PSO) describes biotic and abiotic stresses that a plant may encounter. An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies., An ontology describing biotic and abiotic plant stresses.",
110096
110097
  "example_uri": "http://purl.obolibrary.org/obo/PSO_0000013",
110097
110098
  "homepage": "https://planteome.org/",
110098
110099
  "license": "CC-BY-4.0",
@@ -110103,7 +110104,7 @@
110103
110104
  "https://planteome.org/references"
110104
110105
  ],
110105
110106
  "repository": "https://github.com/Planteome/plant-stress-ontology",
110106
- "version": "2023-11-14"
110107
+ "version": "2025-12-16"
110107
110108
  },
110108
110109
  "bioportal": {
110109
110110
  "contact": {
@@ -110176,8 +110177,8 @@
110176
110177
  "name": "Plant Stress Ontology",
110177
110178
  "prefix": "pso",
110178
110179
  "tracker": "https://github.com/Planteome/plant-stress-ontology/issues",
110179
- "version": "2023-11-14",
110180
- "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2023-11-14/pso.owl"
110180
+ "version": "2025-12-16",
110181
+ "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2025-12-16/pso.owl"
110181
110182
  },
110182
110183
  "ontobee": {
110183
110184
  "library": "Library",
@@ -111243,7 +111244,7 @@
111243
111244
  "pw": {
111244
111245
  "aberowl": {
111245
111246
  "description": "A controlled vocabulary for annotating gene products to pathways.",
111246
- "download_owl": "http://aber-owl.net/media/ontologies/PW/97/pw.owl",
111247
+ "download_owl": "http://aber-owl.net/media/ontologies/PW/98/pw.owl",
111247
111248
  "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
111248
111249
  "name": "Pathway ontology",
111249
111250
  "prefix": "PW"
@@ -111388,8 +111389,8 @@
111388
111389
  "name": "Pathway ontology",
111389
111390
  "prefix": "pw",
111390
111391
  "tracker": "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues",
111391
- "version": "7.95",
111392
- "version.iri": "http://purl.obolibrary.org/obo/pw/7.95/pw.owl"
111392
+ "version": "7.96",
111393
+ "version.iri": "http://purl.obolibrary.org/obo/pw/7.96/pw.owl"
111393
111394
  },
111394
111395
  "ontobee": {
111395
111396
  "library": "Library",
@@ -112111,7 +112112,7 @@
112111
112112
  "rbo": {
112112
112113
  "aberowl": {
112113
112114
  "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
112114
- "download_owl": "http://aber-owl.net/media/ontologies/RBO/38/rbo.owl",
112115
+ "download_owl": "http://aber-owl.net/media/ontologies/RBO/39/rbo.owl",
112115
112116
  "homepage": "https://github.com/Radiobiology-Informatics-Consortium/RBO",
112116
112117
  "name": "Radiation Biology Ontology",
112117
112118
  "prefix": "RBO"
@@ -112178,8 +112179,8 @@
112178
112179
  "name": "Radiation Biology Ontology",
112179
112180
  "prefix": "rbo",
112180
112181
  "tracker": "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues",
112181
- "version": "2025-11-26",
112182
- "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-11-26/rbo.owl"
112182
+ "version": "2025-12-11",
112183
+ "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-12-11/rbo.owl"
112183
112184
  },
112184
112185
  "ontobee": {
112185
112186
  "library": "Library",
@@ -116353,7 +116354,7 @@
116353
116354
  "rs": {
116354
116355
  "aberowl": {
116355
116356
  "description": "Ontology of rat strains",
116356
- "download_owl": "http://aber-owl.net/media/ontologies/RS/202/rs.owl",
116357
+ "download_owl": "http://aber-owl.net/media/ontologies/RS/203/rs.owl",
116357
116358
  "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
116358
116359
  "name": "Rat Strain Ontology",
116359
116360
  "prefix": "RS"
@@ -122701,7 +122702,7 @@
122701
122702
  "slso": {
122702
122703
  "aberowl": {
122703
122704
  "description": "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.",
122704
- "download_owl": "http://aber-owl.net/media/ontologies/SLSO/12/slso.owl",
122705
+ "download_owl": "http://aber-owl.net/media/ontologies/SLSO/13/slso.owl",
122705
122706
  "homepage": "https://github.com/nasa/LSDAO",
122706
122707
  "name": "Space Life Sciences Ontology",
122707
122708
  "prefix": "SLSO"
@@ -122753,8 +122754,8 @@
122753
122754
  "name": "Space Life Sciences Ontology",
122754
122755
  "prefix": "slso",
122755
122756
  "tracker": "https://github.com/nasa/LSDAO/issues",
122756
- "version": "2025-12-09",
122757
- "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-12-09/slso.owl"
122757
+ "version": "2025-12-11",
122758
+ "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-12-11/slso.owl"
122758
122759
  },
122759
122760
  "ontobee": {
122760
122761
  "library": "Library",
@@ -134940,7 +134941,8 @@
134940
134941
  "fairsharing": {
134941
134942
  "abbreviation": "TGMA",
134942
134943
  "description": "A structured controlled vocabulary of the anatomy of mosquitoes.",
134943
- "homepage": "https://www.vectorbase.org/ontology-browser",
134944
+ "homepage": "http://purl.obolibrary.org/obo/tgma.owl",
134945
+ "license": "CC0-1.0",
134944
134946
  "name": "Mosquito gross anatomy",
134945
134947
  "prefix": "FAIRsharing.dqnfkg",
134946
134948
  "publications": [
@@ -135699,7 +135701,8 @@
135699
135701
  "bartoc": {
135700
135702
  "abbreviation": "time",
135701
135703
  "description": "OWL-Time is an OWL-2 DL ontology of temporal concepts, for describing the temporal properties of resources in the world or described in Web pages. The ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. Time positions and durations may be expressed using either the conventional (Gregorian) calendar and clock, or using another temporal reference system such as Unix-time, geologic time, or different calendars.",
135702
- "homepage": "http://www.w3.org/2006/time",
135704
+ "homepage": "https://www.w3.org/TR/owl-time/",
135705
+ "license": "CC-BY-4.0",
135703
135706
  "name": "Time Ontology",
135704
135707
  "prefix": "18311"
135705
135708
  },
@@ -1483,10 +1483,10 @@
1483
1483
  {
1484
1484
  "authors": [
1485
1485
  {
1486
- "email": "cthoyt@gmail.com",
1487
- "github": "cthoyt",
1488
- "name": "Charles Tapley Hoyt",
1489
- "orcid": "0000-0003-4423-4370"
1486
+ "email": "damien@gerbi-gmb.de",
1487
+ "github": "gouttegd",
1488
+ "name": "Damien Goutte-Gattat",
1489
+ "orcid": "0000-0002-6095-8718"
1490
1490
  }
1491
1491
  ],
1492
1492
  "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4BIOIMAGE",
@@ -1505,7 +1505,28 @@
1505
1505
  }
1506
1506
  ],
1507
1507
  "resources": [
1508
- "bioregistry"
1508
+ "bioregistry",
1509
+ "chebi",
1510
+ "cl",
1511
+ "clo",
1512
+ "cmpo",
1513
+ "dicom",
1514
+ "doid",
1515
+ "edam",
1516
+ "efo",
1517
+ "fbbi",
1518
+ "go",
1519
+ "mesh",
1520
+ "mondo",
1521
+ "mp",
1522
+ "mpath",
1523
+ "ncbitaxon",
1524
+ "obi",
1525
+ "radlex",
1526
+ "snomedct",
1527
+ "swo",
1528
+ "uberon",
1529
+ "uo"
1509
1530
  ]
1510
1531
  },
1511
1532
  {